data_7DTD # _model_server_result.job_id 34spE51zNqfC8A1ep35E8g _model_server_result.datetime_utc '2024-12-26 10:30:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dtd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2103}' # _entry.id 7DTD # _exptl.entry_id 7DTD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DTD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 B CYS 53 1_555 A SG CYS 131 B CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf2 A SG CYS 58 B CYS 58 1_555 B SG CYS 962 A CYS 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf3 B SG CYS 320 A CYS 277 1_555 B SG CYS 388 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf4 B SG CYS 379 A CYS 336 1_555 B SG CYS 394 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf5 B SG CYS 964 A CYS 921 1_555 B SG CYS 970 A CYS 927 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 1002 A CYS 959 1_555 B SG CYS 1011 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 B SG CYS 1419 A CYS 1376 1_555 B SG CYS 1439 A CYS 1396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 B SG CYS 1784 A CYS 1741 1_555 B SG CYS 1799 A CYS 1756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B ND2 ASN 381 A ASN 338 1_555 F C1 NAG . A NAG 2104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B ND2 ASN 1421 A ASN 1378 1_555 E C1 NAG . A NAG 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 B ND2 ASN 1435 A ASN 1392 1_555 D C1 NAG . A NAG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B ND2 ASN 1446 A ASN 1403 1_555 C C1 NAG . A NAG 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 335 n n C1 O1 NAG sing 336 n n C1 O5 NAG sing 337 n n C1 H1 NAG sing 338 n n C2 C3 NAG sing 339 n n C2 N2 NAG sing 340 n n C2 H2 NAG sing 341 n n C3 C4 NAG sing 342 n n C3 O3 NAG sing 343 n n C3 H3 NAG sing 344 n n C4 C5 NAG sing 345 n n C4 O4 NAG sing 346 n n C4 H4 NAG sing 347 n n C5 C6 NAG sing 348 n n C5 O5 NAG sing 349 n n C5 H5 NAG sing 350 n n C6 O6 NAG sing 351 n n C6 H61 NAG sing 352 n n C6 H62 NAG sing 353 n n C7 C8 NAG sing 354 n n C7 N2 NAG sing 355 n n C7 O7 NAG doub 356 n n C8 H81 NAG sing 357 n n C8 H82 NAG sing 358 n n C8 H83 NAG sing 359 n n N2 HN2 NAG sing 360 n n O1 HO1 NAG sing 361 n n O3 HO3 NAG sing 362 n n O4 HO4 NAG sing 363 n n O6 HO6 NAG sing 364 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7DTD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 2101 2001 NAG NAG . D 3 NAG A 1 2102 2002 NAG NAG . E 3 NAG A 1 2103 2003 NAG NAG . F 3 NAG A 1 2104 2004 NAG NAG . G 4 9Z9 A 1 2105 1915 9Z9 9Z9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 128.739 108.689 144.87 1 66.24 ? C1 NAG 2103 A 1 HETATM 2 C C2 NAG . . . E 3 130.012 109.033 145.67 1 66.24 ? C2 NAG 2103 A 1 HETATM 3 C C3 NAG . . . E 3 129.721 109.002 147.171 1 66.24 ? C3 NAG 2103 A 1 HETATM 4 C C4 NAG . . . E 3 128.537 109.894 147.509 1 66.24 ? C4 NAG 2103 A 1 HETATM 5 C C5 NAG . . . E 3 127.329 109.472 146.688 1 66.24 ? C5 NAG 2103 A 1 HETATM 6 C C6 NAG . . . E 3 126.129 110.365 146.901 1 66.24 ? C6 NAG 2103 A 1 HETATM 7 C C7 NAG . . . E 3 132.372 108.349 145.688 1 66.24 ? C7 NAG 2103 A 1 HETATM 8 C C8 NAG . . . E 3 133.356 107.292 145.292 1 66.24 ? C8 NAG 2103 A 1 HETATM 9 N N2 NAG . . . E 3 131.098 108.121 145.348 1 66.24 ? N2 NAG 2103 A 1 HETATM 10 O O3 NAG . . . E 3 130.865 109.432 147.899 1 66.24 ? O3 NAG 2103 A 1 HETATM 11 O O4 NAG . . . E 3 128.225 109.789 148.894 1 66.24 ? O4 NAG 2103 A 1 HETATM 12 O O5 NAG . . . E 3 127.653 109.544 145.293 1 66.24 ? O5 NAG 2103 A 1 HETATM 13 O O6 NAG . . . E 3 125.642 110.884 145.671 1 66.24 ? O6 NAG 2103 A 1 HETATM 14 O O7 NAG . . . E 3 132.713 109.36 146.292 1 66.24 ? O7 NAG 2103 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #