data_7DTD # _model_server_result.job_id HELvyh0P7Z5tT4xa7sG0Pg _model_server_result.datetime_utc '2024-12-26 10:05:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dtd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2105}' # _entry.id 7DTD # _exptl.entry_id 7DTD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.805 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DTD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 B CYS 53 1_555 A SG CYS 131 B CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf2 A SG CYS 58 B CYS 58 1_555 B SG CYS 962 A CYS 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf3 B SG CYS 320 A CYS 277 1_555 B SG CYS 388 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf4 B SG CYS 379 A CYS 336 1_555 B SG CYS 394 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf5 B SG CYS 964 A CYS 921 1_555 B SG CYS 970 A CYS 927 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 1002 A CYS 959 1_555 B SG CYS 1011 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 B SG CYS 1419 A CYS 1376 1_555 B SG CYS 1439 A CYS 1396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 B SG CYS 1784 A CYS 1741 1_555 B SG CYS 1799 A CYS 1756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B ND2 ASN 381 A ASN 338 1_555 F C1 NAG . A NAG 2104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B ND2 ASN 1421 A ASN 1378 1_555 E C1 NAG . A NAG 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 B ND2 ASN 1435 A ASN 1392 1_555 D C1 NAG . A NAG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B ND2 ASN 1446 A ASN 1403 1_555 C C1 NAG . A NAG 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? # _chem_comp.formula 'C34 H56 O5' _chem_comp.formula_weight 544.805 _chem_comp.id 9Z9 _chem_comp.mon_nstd_flag . _chem_comp.name (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C26 9Z9 sing 1 n n O25 C24 9Z9 sing 2 n n C50 O49 9Z9 sing 3 n n O49 C48 9Z9 sing 4 n n C24 C23 9Z9 sing 5 n n C48 C23 9Z9 sing 6 n n C23 C22 9Z9 sing 7 n n C22 C21 9Z9 sing 8 n n C21 O20 9Z9 sing 9 n n O20 C17 9Z9 sing 10 n n C17 C18 9Z9 sing 11 n n C17 C16 9Z9 sing 12 n n C18 C19 9Z9 sing 13 n n C16 C13 9Z9 sing 14 n n C19 C11 9Z9 sing 15 n n C13 C11 9Z9 sing 16 n n C13 C14 9Z9 doub 17 n n C11 C12 9Z9 sing 18 n n C11 C08 9Z9 sing 19 n n C14 C15 9Z9 sing 20 n n C08 C09 9Z9 sing 21 n n C08 C07 9Z9 sing 22 n n C15 C07 9Z9 sing 23 n n C09 C10 9Z9 sing 24 n n C07 C06 9Z9 sing 25 n n C10 C02 9Z9 sing 26 n n C06 C02 9Z9 sing 27 n n C06 C05 9Z9 sing 28 n n C02 C01 9Z9 sing 29 n n C02 C03 9Z9 sing 30 n n C05 C04 9Z9 sing 31 n n C03 C04 9Z9 sing 32 n n C03 C74 9Z9 sing 33 n n C04 O72 9Z9 sing 34 n n C74 C75 9Z9 sing 35 n n C74 C73 9Z9 sing 36 n n O72 C73 9Z9 sing 37 n n C73 O80 9Z9 sing 38 n n C73 C76 9Z9 sing 39 n n O80 C79 9Z9 sing 40 n n C76 C77 9Z9 sing 41 n n C79 C78 9Z9 sing 42 n n C77 C78 9Z9 sing 43 n n C78 C81 9Z9 sing 44 n n C01 H1 9Z9 sing 45 n n C01 H2 9Z9 sing 46 n n C01 H3 9Z9 sing 47 n n C03 H4 9Z9 sing 48 n n C04 H5 9Z9 sing 49 n n C05 H6 9Z9 sing 50 n n C05 H7 9Z9 sing 51 n n C06 H8 9Z9 sing 52 n n C07 H9 9Z9 sing 53 n n C08 H10 9Z9 sing 54 n n C09 H11 9Z9 sing 55 n n C09 H12 9Z9 sing 56 n n C10 H13 9Z9 sing 57 n n C10 H14 9Z9 sing 58 n n C12 H15 9Z9 sing 59 n n C12 H16 9Z9 sing 60 n n C12 H17 9Z9 sing 61 n n C14 H18 9Z9 sing 62 n n C15 H19 9Z9 sing 63 n n C15 H20 9Z9 sing 64 n n C16 H21 9Z9 sing 65 n n C16 H22 9Z9 sing 66 n n C17 H23 9Z9 sing 67 n n C18 H24 9Z9 sing 68 n n C18 H25 9Z9 sing 69 n n C19 H26 9Z9 sing 70 n n C19 H27 9Z9 sing 71 n n C21 H28 9Z9 sing 72 n n C21 H29 9Z9 sing 73 n n C22 H30 9Z9 sing 74 n n C22 H31 9Z9 sing 75 n n C23 H32 9Z9 sing 76 n n C24 H33 9Z9 sing 77 n n C24 H34 9Z9 sing 78 n n C26 H35 9Z9 sing 79 n n C26 H36 9Z9 sing 80 n n C26 H37 9Z9 sing 81 n n C48 H38 9Z9 sing 82 n n C48 H39 9Z9 sing 83 n n C50 H40 9Z9 sing 84 n n C50 H41 9Z9 sing 85 n n C50 H42 9Z9 sing 86 n n C74 H43 9Z9 sing 87 n n C75 H44 9Z9 sing 88 n n C75 H45 9Z9 sing 89 n n C75 H46 9Z9 sing 90 n n C76 H47 9Z9 sing 91 n n C76 H48 9Z9 sing 92 n n C77 H49 9Z9 sing 93 n n C77 H50 9Z9 sing 94 n n C78 H51 9Z9 sing 95 n n C79 H52 9Z9 sing 96 n n C79 H53 9Z9 sing 97 n n C81 H54 9Z9 sing 98 n n C81 H55 9Z9 sing 99 n n C81 H56 9Z9 sing 100 n n # _atom_sites.entry_id 7DTD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 2101 2001 NAG NAG . D 3 NAG A 1 2102 2002 NAG NAG . E 3 NAG A 1 2103 2003 NAG NAG . F 3 NAG A 1 2104 2004 NAG NAG . G 4 9Z9 A 1 2105 1915 9Z9 9Z9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 9Z9 . . . G 4 105.985 110.796 102.093 1 20 ? C01 9Z9 2105 A 1 HETATM 2 C C02 9Z9 . . . G 4 107.128 109.968 101.477 1 20 ? C02 9Z9 2105 A 1 HETATM 3 C C03 9Z9 . . . G 4 107.894 109.138 102.528 1 20 ? C03 9Z9 2105 A 1 HETATM 4 C C04 9Z9 . . . G 4 107.119 107.816 102.597 1 20 ? C04 9Z9 2105 A 1 HETATM 5 C C05 9Z9 . . . G 4 106.035 107.829 101.523 1 20 ? C05 9Z9 2105 A 1 HETATM 6 C C06 9Z9 . . . G 4 106.654 108.83 100.551 1 20 ? C06 9Z9 2105 A 1 HETATM 7 C C07 9Z9 . . . G 4 105.837 109.275 99.337 1 20 ? C07 9Z9 2105 A 1 HETATM 8 C C08 9Z9 . . . G 4 106.646 110.306 98.533 1 20 ? C08 9Z9 2105 A 1 HETATM 9 C C09 9Z9 . . . G 4 107.203 111.421 99.438 1 20 ? C09 9Z9 2105 A 1 HETATM 10 C C10 9Z9 . . . G 4 108.012 110.885 100.628 1 20 ? C10 9Z9 2105 A 1 HETATM 11 C C11 9Z9 . . . G 4 105.85 110.83 97.312 1 20 ? C11 9Z9 2105 A 1 HETATM 12 C C12 9Z9 . . . G 4 104.761 111.824 97.755 1 20 ? C12 9Z9 2105 A 1 HETATM 13 C C13 9Z9 . . . G 4 105.19 109.687 96.558 1 20 ? C13 9Z9 2105 A 1 HETATM 14 C C14 9Z9 . . . G 4 104.958 108.49 97.119 1 20 ? C14 9Z9 2105 A 1 HETATM 15 C C15 9Z9 . . . G 4 105.508 108.07 98.448 1 20 ? C15 9Z9 2105 A 1 HETATM 16 C C16 9Z9 . . . G 4 104.642 110.001 95.181 1 20 ? C16 9Z9 2105 A 1 HETATM 17 C C17 9Z9 . . . G 4 105.72 110.623 94.301 1 20 ? C17 9Z9 2105 A 1 HETATM 18 C C18 9Z9 . . . G 4 106.24 111.882 94.984 1 20 ? C18 9Z9 2105 A 1 HETATM 19 C C19 9Z9 . . . G 4 106.834 111.524 96.351 1 20 ? C19 9Z9 2105 A 1 HETATM 20 O O20 9Z9 . . . G 4 105.162 110.901 93.049 1 20 ? O20 9Z9 2105 A 1 HETATM 21 C C21 9Z9 . . . G 4 105.184 109.805 92.177 1 20 ? C21 9Z9 2105 A 1 HETATM 22 C C22 9Z9 . . . G 4 103.755 109.466 91.759 1 20 ? C22 9Z9 2105 A 1 HETATM 23 C C23 9Z9 . . . G 4 103.627 109.11 90.263 1 20 ? C23 9Z9 2105 A 1 HETATM 24 C C24 9Z9 . . . G 4 104.869 108.4 89.711 1 20 ? C24 9Z9 2105 A 1 HETATM 25 O O25 9Z9 . . . G 4 105.357 109.117 88.601 1 20 ? O25 9Z9 2105 A 1 HETATM 26 C C26 9Z9 . . . G 4 106.74 109.377 88.659 1 20 ? C26 9Z9 2105 A 1 HETATM 27 C C48 9Z9 . . . G 4 102.378 108.251 90.031 1 20 ? C48 9Z9 2105 A 1 HETATM 28 O O49 9Z9 . . . G 4 101.479 108.99 89.248 1 20 ? O49 9Z9 2105 A 1 HETATM 29 C C50 9Z9 . . . G 4 100.217 108.395 89.08 1 20 ? C50 9Z9 2105 A 1 HETATM 30 O O72 9Z9 . . . G 4 106.599 107.737 103.883 1 20 ? O72 9Z9 2105 A 1 HETATM 31 C C73 9Z9 . . . G 4 107.541 108.323 104.745 1 20 ? C73 9Z9 2105 A 1 HETATM 32 C C74 9Z9 . . . G 4 107.95 109.588 103.993 1 20 ? C74 9Z9 2105 A 1 HETATM 33 C C75 9Z9 . . . G 4 109.281 110.228 104.4 1 20 ? C75 9Z9 2105 A 1 HETATM 34 C C76 9Z9 . . . G 4 106.846 108.625 106.068 1 20 ? C76 9Z9 2105 A 1 HETATM 35 C C77 9Z9 . . . G 4 107.083 107.481 107.063 1 20 ? C77 9Z9 2105 A 1 HETATM 36 C C78 9Z9 . . . G 4 108.58 107.167 107.25 1 20 ? C78 9Z9 2105 A 1 HETATM 37 C C79 9Z9 . . . G 4 109.388 107.351 105.97 1 20 ? C79 9Z9 2105 A 1 HETATM 38 O O80 9Z9 . . . G 4 108.583 107.367 104.82 1 20 ? O80 9Z9 2105 A 1 HETATM 39 C C81 9Z9 . . . G 4 108.794 105.758 107.819 1 20 ? C81 9Z9 2105 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 39 #