data_7DTS # _model_server_result.job_id LMx2KbnHJCxrvN5IyomoTw _model_server_result.datetime_utc '2024-10-12 04:29:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dts # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 7DTS # _exptl.entry_id 7DTS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 1005.633 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DTS _cell.length_a 59.01 _cell.length_b 111.28 _cell.length_c 264.09 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DTS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C30 H38 N15 O19 P3' _chem_comp.formula_weight 1005.633 _chem_comp.id 25A _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1P P 25A sing 1 n n O1P H1P 25A sing 2 n n P O2P 25A sing 3 n n P O3P 25A doub 4 n n P O5' 25A sing 5 n n O2P H2P 25A sing 6 n n O5' C5' 25A sing 7 n n C5' C4' 25A sing 8 n n C5' "H5'1" 25A sing 9 n n C5' "H5'2" 25A sing 10 n n C4' O4' 25A sing 11 n n C4' C3' 25A sing 12 n n C4' H4' 25A sing 13 n n O4' C1' 25A sing 14 n n C1' C2' 25A sing 15 n n C1' N9 25A sing 16 n n C1' H1' 25A sing 17 n n C2' O2' 25A sing 18 n n C2' C3' 25A sing 19 n n C2' H2' 25A sing 20 n n O2' P1 25A sing 21 n n C3' O3' 25A sing 22 n n C3' H3' 25A sing 23 n n O3' H2 25A sing 24 n n N9 C8 25A sing 25 n y N9 C4 25A sing 26 n y C8 N7 25A doub 27 n y C8 H8 25A sing 28 n n N7 C5 25A sing 29 n y C5 C6 25A sing 30 n y C5 C4 25A doub 31 n y C6 N6 25A sing 32 n n C6 N1 25A doub 33 n y N6 HN61 25A sing 34 n n N6 HN62 25A sing 35 n n C4 N3 25A sing 36 n y N3 C2 25A doub 37 n y C2 N1 25A sing 38 n y C2 H3 25A sing 39 n n P1 OBP 25A sing 40 n n P1 OCP 25A doub 41 n n P1 OF' 25A sing 42 n n OBP H11P 25A sing 43 n n OF' CF' 25A sing 44 n n CF' CE' 25A sing 45 n n CF' H151 25A sing 46 n n CF' H152 25A sing 47 n n CE' OE' 25A sing 48 n n CE' CD' 25A sing 49 n n CE' H14' 25A sing 50 n n OE' CB' 25A sing 51 n n CB' N19 25A sing 52 n n CB' CC' 25A sing 53 n n CB' H11' 25A sing 54 n n N19 C18 25A sing 55 n y N19 C14 25A sing 56 n y C18 N17 25A doub 57 n y C18 H18 25A sing 58 n n N17 C15 25A sing 59 n y C15 C14 25A doub 60 n y C15 C16 25A sing 61 n y C14 N13 25A sing 62 n y N13 C12 25A doub 63 n y C12 N11 25A sing 64 n y C12 H12 25A sing 65 n n N11 C16 25A doub 66 n y C16 N16 25A sing 67 n n N16 H161 25A sing 68 n n N16 H162 25A sing 69 n n CC' OC' 25A sing 70 n n CC' CD' 25A sing 71 n n CC' H12' 25A sing 72 n n OC' P2 25A sing 73 n n CD' OD' 25A sing 74 n n CD' H13' 25A sing 75 n n OD' H1 25A sing 76 n n P2 OLP 25A sing 77 n n P2 OMP 25A doub 78 n n P2 OP' 25A sing 79 n n OLP H21P 25A sing 80 n n OP' CP' 25A sing 81 n n CP' CO' 25A sing 82 n n CP' H251 25A sing 83 n n CP' H252 25A sing 84 n n CO' OO' 25A sing 85 n n CO' CN' 25A sing 86 n n CO' H24' 25A sing 87 n n OO' CL' 25A sing 88 n n CL' N29 25A sing 89 n n CL' CM' 25A sing 90 n n CL' H21' 25A sing 91 n n N29 C28 25A sing 92 n y N29 C24 25A sing 93 n y C28 N27 25A doub 94 n y C28 H28 25A sing 95 n n N27 C25 25A sing 96 n y C25 C24 25A doub 97 n y C25 C26 25A sing 98 n y C24 N23 25A sing 99 n y N23 C22 25A doub 100 n y C22 N21 25A sing 101 n y C22 H22 25A sing 102 n n N21 C26 25A doub 103 n y C26 N26 25A sing 104 n n N26 H261 25A sing 105 n n N26 H262 25A sing 106 n n CM' OM' 25A sing 107 n n CM' CN' 25A sing 108 n n CM' H22' 25A sing 109 n n OM' H5 25A sing 110 n n CN' ON' 25A sing 111 n n CN' H23' 25A sing 112 n n ON' H4 25A sing 113 n n # _atom_sites.entry_id 7DTS _atom_sites.fract_transf_matrix[1][1] 0.016946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 25A a 1 801 801 25A 25L . D 3 27K a 1 802 901 27K LIG . E 4 PO4 a 1 803 1 PO4 PO4 . F 2 25A b 1 801 801 25A 25L . G 3 27K b 1 802 901 27K LIG . H 5 HOH a 1 901 97 HOH HOH . H 5 HOH a 2 902 39 HOH HOH . H 5 HOH a 3 903 45 HOH HOH . H 5 HOH a 4 904 67 HOH HOH . H 5 HOH a 5 905 43 HOH HOH . H 5 HOH a 6 906 57 HOH HOH . H 5 HOH a 7 907 25 HOH HOH . H 5 HOH a 8 908 58 HOH HOH . H 5 HOH a 9 909 29 HOH HOH . H 5 HOH a 10 910 69 HOH HOH . H 5 HOH a 11 911 47 HOH HOH . H 5 HOH a 12 912 42 HOH HOH . H 5 HOH a 13 913 24 HOH HOH . H 5 HOH a 14 914 28 HOH HOH . H 5 HOH a 15 915 41 HOH HOH . H 5 HOH a 16 916 20 HOH HOH . H 5 HOH a 17 917 78 HOH HOH . H 5 HOH a 18 918 79 HOH HOH . H 5 HOH a 19 919 31 HOH HOH . H 5 HOH a 20 920 95 HOH HOH . H 5 HOH a 21 921 38 HOH HOH . H 5 HOH a 22 922 2 HOH HOH . H 5 HOH a 23 923 49 HOH HOH . H 5 HOH a 24 924 48 HOH HOH . H 5 HOH a 25 925 89 HOH HOH . H 5 HOH a 26 926 83 HOH HOH . H 5 HOH a 27 927 86 HOH HOH . H 5 HOH a 28 928 17 HOH HOH . H 5 HOH a 29 929 3 HOH HOH . H 5 HOH a 30 930 96 HOH HOH . H 5 HOH a 31 931 27 HOH HOH . H 5 HOH a 32 932 52 HOH HOH . H 5 HOH a 33 933 84 HOH HOH . H 5 HOH a 34 934 56 HOH HOH . H 5 HOH a 35 935 37 HOH HOH . H 5 HOH a 36 936 88 HOH HOH . H 5 HOH a 37 937 64 HOH HOH . H 5 HOH a 38 938 77 HOH HOH . H 5 HOH a 39 939 26 HOH HOH . H 5 HOH a 40 940 82 HOH HOH . H 5 HOH a 41 941 81 HOH HOH . H 5 HOH a 42 942 1 HOH HOH . H 5 HOH a 43 943 98 HOH HOH . H 5 HOH a 44 944 76 HOH HOH . H 5 HOH a 45 945 30 HOH HOH . H 5 HOH a 46 946 23 HOH HOH . H 5 HOH a 47 947 80 HOH HOH . H 5 HOH a 48 948 85 HOH HOH . H 5 HOH a 49 949 63 HOH HOH . I 5 HOH b 1 901 18 HOH HOH . I 5 HOH b 2 902 11 HOH HOH . I 5 HOH b 3 903 34 HOH HOH . I 5 HOH b 4 904 61 HOH HOH . I 5 HOH b 5 905 60 HOH HOH . I 5 HOH b 6 906 13 HOH HOH . I 5 HOH b 7 907 91 HOH HOH . I 5 HOH b 8 908 22 HOH HOH . I 5 HOH b 9 909 59 HOH HOH . I 5 HOH b 10 910 51 HOH HOH . I 5 HOH b 11 911 70 HOH HOH . I 5 HOH b 12 912 35 HOH HOH . I 5 HOH b 13 913 93 HOH HOH . I 5 HOH b 14 914 15 HOH HOH . I 5 HOH b 15 915 10 HOH HOH . I 5 HOH b 16 916 32 HOH HOH . I 5 HOH b 17 917 74 HOH HOH . I 5 HOH b 18 918 9 HOH HOH . I 5 HOH b 19 919 53 HOH HOH . I 5 HOH b 20 920 14 HOH HOH . I 5 HOH b 21 921 7 HOH HOH . I 5 HOH b 22 922 71 HOH HOH . I 5 HOH b 23 923 40 HOH HOH . I 5 HOH b 24 924 92 HOH HOH . I 5 HOH b 25 925 19 HOH HOH . I 5 HOH b 26 926 21 HOH HOH . I 5 HOH b 27 927 16 HOH HOH . I 5 HOH b 28 928 87 HOH HOH . I 5 HOH b 29 929 94 HOH HOH . I 5 HOH b 30 930 5 HOH HOH . I 5 HOH b 31 931 50 HOH HOH . I 5 HOH b 32 932 36 HOH HOH . I 5 HOH b 33 933 72 HOH HOH . I 5 HOH b 34 934 90 HOH HOH . I 5 HOH b 35 935 8 HOH HOH . I 5 HOH b 36 936 62 HOH HOH . I 5 HOH b 37 937 4 HOH HOH . I 5 HOH b 38 938 73 HOH HOH . I 5 HOH b 39 939 44 HOH HOH . I 5 HOH b 40 940 12 HOH HOH . I 5 HOH b 41 941 68 HOH HOH . I 5 HOH b 42 942 65 HOH HOH . I 5 HOH b 43 943 66 HOH HOH . I 5 HOH b 44 944 54 HOH HOH . I 5 HOH b 45 945 6 HOH HOH . I 5 HOH b 46 946 75 HOH HOH . I 5 HOH b 47 947 46 HOH HOH . I 5 HOH b 48 948 33 HOH HOH . I 5 HOH b 49 949 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1P 25A . . . F 2 24.34 -43.463 -26.669 1 143.76 ? O1P 25A 801 b 1 HETATM 2 P P 25A . . . F 2 24.359 -44.629 -27.575 1 147.37 ? P 25A 801 b 1 HETATM 3 O O2P 25A . . . F 2 25.726 -45.281 -27.607 1 139.41 ? O2P 25A 801 b 1 HETATM 4 O O3P 25A . . . F 2 24.076 -44.141 -29.153 1 167.41 ? O3P 25A 801 b 1 HETATM 5 O O5' 25A . . . F 2 23.451 -45.769 -26.839 1 113.64 ? O5' 25A 801 b 1 HETATM 6 C C5' 25A . . . F 2 22.054 -45.488 -26.577 1 110.52 ? C5' 25A 801 b 1 HETATM 7 C C4' 25A . . . F 2 20.993 -46.097 -27.497 1 101.42 ? C4' 25A 801 b 1 HETATM 8 O O4' 25A . . . F 2 20.872 -47.329 -27.112 1 96.87 ? O4' 25A 801 b 1 HETATM 9 C C1' 25A . . . F 2 19.53 -47.404 -26.207 1 95.57 ? C1' 25A 801 b 1 HETATM 10 C C2' 25A . . . F 2 18.725 -46.4 -26.601 1 91.4 ? C2' 25A 801 b 1 HETATM 11 O O2' 25A . . . F 2 17.82 -46.776 -27.707 1 78.36 ? O2' 25A 801 b 1 HETATM 12 C C3' 25A . . . F 2 19.645 -45.338 -27.163 1 93.3 ? C3' 25A 801 b 1 HETATM 13 O O3' 25A . . . F 2 19.08 -44.803 -28.254 1 96.24 ? O3' 25A 801 b 1 HETATM 14 N N9 25A . . . F 2 19.898 -47.263 -24.818 1 104.88 ? N9 25A 801 b 1 HETATM 15 C C8 25A . . . F 2 20.338 -46.158 -24.205 1 107.59 ? C8 25A 801 b 1 HETATM 16 N N7 25A . . . F 2 20.587 -46.414 -22.927 1 105.84 ? N7 25A 801 b 1 HETATM 17 C C5 25A . . . F 2 20.273 -47.696 -22.745 1 104.7 ? C5 25A 801 b 1 HETATM 18 C C6 25A . . . F 2 20.334 -48.462 -21.624 1 102.86 ? C6 25A 801 b 1 HETATM 19 N N6 25A . . . F 2 20.74 -48.159 -20.28 1 102.15 ? N6 25A 801 b 1 HETATM 20 C C4 25A . . . F 2 19.852 -48.225 -23.886 1 108.75 ? C4 25A 801 b 1 HETATM 21 N N3 25A . . . F 2 19.474 -49.527 -23.986 1 102.49 ? N3 25A 801 b 1 HETATM 22 C C2 25A . . . F 2 19.531 -50.279 -22.866 1 102.24 ? C2 25A 801 b 1 HETATM 23 N N1 25A . . . F 2 19.945 -49.742 -21.713 1 103.97 ? N1 25A 801 b 1 HETATM 24 P P1 25A . . . F 2 16.19 -46.579 -27.358 1 85.58 ? P1 25A 801 b 1 HETATM 25 O OBP 25A . . . F 2 15.347 -46.563 -28.579 1 99.03 ? OBP 25A 801 b 1 HETATM 26 O OCP 25A . . . F 2 15.979 -45.274 -26.601 1 105.37 ? OCP 25A 801 b 1 HETATM 27 O OF' 25A . . . F 2 15.722 -47.816 -26.403 1 93.39 ? OF' 25A 801 b 1 HETATM 28 C CF' 25A . . . F 2 15.913 -49.15 -26.885 1 81.82 ? CF' 25A 801 b 1 HETATM 29 C CE' 25A . . . F 2 15.422 -50.095 -25.807 1 91.52 ? CE' 25A 801 b 1 HETATM 30 O OE' 25A . . . F 2 16.345 -50.235 -24.868 1 103.59 ? OE' 25A 801 b 1 HETATM 31 C CB' 25A . . . F 2 15.646 -49.956 -23.425 1 91.77 ? CB' 25A 801 b 1 HETATM 32 N N19 25A . . . F 2 16.199 -48.753 -22.862 1 89.62 ? N19 25A 801 b 1 HETATM 33 C C18 25A . . . F 2 16.231 -47.535 -23.429 1 81.95 ? C18 25A 801 b 1 HETATM 34 N N17 25A . . . F 2 16.858 -46.695 -22.574 1 84.02 ? N17 25A 801 b 1 HETATM 35 C C15 25A . . . F 2 17.213 -47.411 -21.474 1 84.2 ? C15 25A 801 b 1 HETATM 36 C C14 25A . . . F 2 16.816 -48.685 -21.651 1 89.54 ? C14 25A 801 b 1 HETATM 37 N N13 25A . . . F 2 17.047 -49.61 -20.718 1 82.04 ? N13 25A 801 b 1 HETATM 38 C C12 25A . . . F 2 17.699 -49.24 -19.565 1 98.95 ? C12 25A 801 b 1 HETATM 39 N N11 25A . . . F 2 18.095 -47.943 -19.389 1 98.84 ? N11 25A 801 b 1 HETATM 40 C C16 25A . . . F 2 17.859 -47.029 -20.317 1 87.94 ? C16 25A 801 b 1 HETATM 41 N N16 25A . . . F 2 18.422 -45.732 -19.848 1 90.18 ? N16 25A 801 b 1 HETATM 42 C CC' 25A . . . F 2 14.33 -49.896 -23.651 1 90.9 ? CC' 25A 801 b 1 HETATM 43 O OC' 25A . . . F 2 13.95 -51.299 -23.644 1 85.4 ? OC' 25A 801 b 1 HETATM 44 C CD' 25A . . . F 2 14.154 -49.485 -25.125 1 92.69 ? CD' 25A 801 b 1 HETATM 45 O OD' 25A . . . F 2 13.088 -50.037 -25.684 1 84.35 ? OD' 25A 801 b 1 HETATM 46 P P2 25A . . . F 2 13.034 -51.966 -22.484 1 98.41 ? P2 25A 801 b 1 HETATM 47 O OLP 25A . . . F 2 13.352 -51.265 -21.201 1 108.41 ? OLP 25A 801 b 1 HETATM 48 O OMP 25A . . . F 2 13.423 -53.445 -22.385 1 99.27 ? OMP 25A 801 b 1 HETATM 49 O OP' 25A . . . F 2 11.413 -51.922 -22.872 1 98.57 ? OP' 25A 801 b 1 HETATM 50 C CP' 25A . . . F 2 10.773 -50.776 -23.484 1 87.88 ? CP' 25A 801 b 1 HETATM 51 C CO' 25A . . . F 2 9.26 -50.884 -23.146 1 100.12 ? CO' 25A 801 b 1 HETATM 52 O OO' 25A . . . F 2 9.028 -52.065 -22.637 1 116.38 ? OO' 25A 801 b 1 HETATM 53 C CL' 25A . . . F 2 7.796 -51.937 -21.538 1 111.11 ? CL' 25A 801 b 1 HETATM 54 N N29 25A . . . F 2 8.066 -52.818 -20.431 1 112.68 ? N29 25A 801 b 1 HETATM 55 C C28 25A . . . F 2 9.016 -52.743 -19.488 1 117.97 ? C28 25A 801 b 1 HETATM 56 N N27 25A . . . F 2 8.901 -53.81 -18.671 1 118.59 ? N27 25A 801 b 1 HETATM 57 C C25 25A . . . F 2 7.878 -54.561 -19.117 1 118.9 ? C25 25A 801 b 1 HETATM 58 C C24 25A . . . F 2 7.361 -53.947 -20.197 1 116.71 ? C24 25A 801 b 1 HETATM 59 N N23 25A . . . F 2 6.301 -54.493 -20.848 1 118.08 ? N23 25A 801 b 1 HETATM 60 C C22 25A . . . F 2 5.764 -55.665 -20.393 1 128.71 ? C22 25A 801 b 1 HETATM 61 N N21 25A . . . F 2 6.279 -56.288 -19.306 1 123.75 ? N21 25A 801 b 1 HETATM 62 C C26 25A . . . F 2 7.332 -55.757 -18.67 1 125 ? C26 25A 801 b 1 HETATM 63 N N26 25A . . . F 2 7.73 -56.589 -17.497 1 135.63 ? N26 25A 801 b 1 HETATM 64 C CM' 25A . . . F 2 7.682 -50.661 -21.232 1 111.28 ? CM' 25A 801 b 1 HETATM 65 O OM' 25A . . . F 2 6.373 -50.157 -21.745 1 113.04 ? OM' 25A 801 b 1 HETATM 66 C CN' 25A . . . F 2 8.881 -49.954 -21.942 1 102.42 ? CN' 25A 801 b 1 HETATM 67 O ON' 25A . . . F 2 8.571 -48.729 -22.351 1 92.66 ? ON' 25A 801 b 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 67 #