data_7DTV # _model_server_result.job_id yA8qCUtKBpP0tYRV5AqPPQ _model_server_result.datetime_utc '2025-02-28 20:54:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dtv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1101}' # _entry.id 7DTV # _exptl.entry_id 7DTV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 204.225 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DTV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 908 NAG 2 n C NAG 2 C 2 NAG A 909 NAG 3 n D NAG 1 D 1 NAG A 910 NAG 3 n D NAG 2 D 2 NAG A 911 NAG 3 n D NAG 3 D 3 NAG A 912 NAG 2 n E NAG 1 E 1 NAG B 908 NAG 2 n E NAG 2 E 2 NAG B 909 NAG 3 n F NAG 1 F 1 NAG B 910 NAG 3 n F NAG 2 F 2 NAG B 911 NAG 3 n F NAG 3 F 3 NAG B 912 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 71 A CYS 60 1_555 A SG CYS 112 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 247 A CYS 236 1_555 A SG CYS 572 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf3 A SG CYS 369 A CYS 358 1_555 A SG CYS 406 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? disulf ? disulf4 A SG CYS 448 A CYS 437 1_555 A SG CYS 460 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 553 A CYS 542 1_555 A SG CYS 573 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 A SG CYS 557 A CYS 546 1_555 A SG CYS 576 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 A SG CYS 579 A CYS 568 1_555 A SG CYS 593 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 A SG CYS 596 A CYS 585 1_555 A SG CYS 609 A CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 688 A CYS 677 1_555 A SG CYS 776 A CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 71 B CYS 60 1_555 B SG CYS 112 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 247 B CYS 236 1_555 B SG CYS 572 B CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf12 B SG CYS 369 B CYS 358 1_555 B SG CYS 406 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? disulf ? disulf13 B SG CYS 448 B CYS 437 1_555 B SG CYS 460 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 B SG CYS 553 B CYS 542 1_555 B SG CYS 573 B CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf15 B SG CYS 557 B CYS 546 1_555 B SG CYS 576 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf16 B SG CYS 579 B CYS 568 1_555 B SG CYS 593 B CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 B SG CYS 596 B CYS 585 1_555 B SG CYS 609 B CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 B SG CYS 688 B CYS 677 1_555 B SG CYS 776 B CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 272 A ASN 261 1_555 J C1 NAG . A NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 298 A ASN 287 1_555 K C1 NAG . A NAG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 457 A ASN 446 1_555 L C1 NAG . A NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale4 A ND2 ASN 479 A ASN 468 1_555 M C1 NAG . A NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 A ND2 ASN 499 A ASN 488 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 A ND2 ASN 552 A ASN 541 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B ND2 ASN 272 B ASN 261 1_555 Q C1 NAG . B NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale8 B ND2 ASN 298 B ASN 287 1_555 R C1 NAG . B NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 B ND2 ASN 457 B ASN 446 1_555 S C1 NAG . B NAG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale10 B ND2 ASN 479 B ASN 468 1_555 T C1 NAG . B NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale11 B ND2 ASN 499 B ASN 488 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale12 B ND2 ASN 552 B ASN 541 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale14 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale15 D O4 NAG . D NAG 2 1_555 D C1 NAG . D NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale16 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale17 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale18 F O4 NAG . F NAG 2 1_555 F C1 NAG . F NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? metalc ? metalc1 A OG SER 313 A SER 302 1_555 H CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc2 A O GLY 568 A GLY 557 1_555 N CA CA . A CA 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc3 I CA CA . A CA 1103 1_555 B O GLY 568 B GLY 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc4 B OG SER 313 B SER 302 1_555 P CA CA . B CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 334 n n N H TRP sing 335 n n N H2 TRP sing 336 n n CA C TRP sing 337 n n CA CB TRP sing 338 n n CA HA TRP sing 339 n n C O TRP doub 340 n n C OXT TRP sing 341 n n CB CG TRP sing 342 n n CB HB2 TRP sing 343 n n CB HB3 TRP sing 344 n n CG CD1 TRP doub 345 n y CG CD2 TRP sing 346 n y CD1 NE1 TRP sing 347 n y CD1 HD1 TRP sing 348 n n CD2 CE2 TRP doub 349 n y CD2 CE3 TRP sing 350 n y NE1 CE2 TRP sing 351 n y NE1 HE1 TRP sing 352 n n CE2 CZ2 TRP sing 353 n y CE3 CZ3 TRP doub 354 n y CE3 HE3 TRP sing 355 n n CZ2 CH2 TRP doub 356 n y CZ2 HZ2 TRP sing 357 n n CZ3 CH2 TRP sing 358 n y CZ3 HZ3 TRP sing 359 n n CH2 HH2 TRP sing 360 n n OXT HXT TRP sing 361 n n # _atom_sites.entry_id 7DTV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 TRP A 1 1101 901 TRP TRP . H 5 CA A 1 1102 902 CA CA . I 5 CA A 1 1103 903 CA CA . J 6 NAG A 1 1104 904 NAG NAG . K 6 NAG A 1 1105 905 NAG NAG . L 6 NAG A 1 1106 906 NAG NAG . M 6 NAG A 1 1107 907 NAG NAG . N 5 CA A 1 1108 903 CA CA . O 4 TRP B 1 1101 901 TRP TRP . P 5 CA B 1 1102 902 CA CA . Q 6 NAG B 1 1103 904 NAG NAG . R 6 NAG B 1 1104 905 NAG NAG . S 6 NAG B 1 1105 906 NAG NAG . T 6 NAG B 1 1106 907 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . G 4 174.74 155.601 222.199 1 17.74 ? N TRP 1101 A 1 HETATM 2 C CA TRP . . . G 4 174.064 154.386 222.616 1 17.74 ? CA TRP 1101 A 1 HETATM 3 C C TRP . . . G 4 172.613 154.649 222.902 1 17.74 ? C TRP 1101 A 1 HETATM 4 O O TRP . . . G 4 172.156 155.773 222.774 1 17.74 ? O TRP 1101 A 1 HETATM 5 C CB TRP . . . G 4 174.715 153.805 223.85 1 17.74 ? CB TRP 1101 A 1 HETATM 6 C CG TRP . . . G 4 175.734 152.809 223.548 1 17.74 ? CG TRP 1101 A 1 HETATM 7 C CD1 TRP . . . G 4 176.93 153.02 222.948 1 17.74 ? CD1 TRP 1101 A 1 HETATM 8 C CD2 TRP . . . G 4 175.659 151.419 223.825 1 17.74 ? CD2 TRP 1101 A 1 HETATM 9 N NE1 TRP . . . G 4 177.614 151.842 222.837 1 17.74 ? NE1 TRP 1101 A 1 HETATM 10 C CE2 TRP . . . G 4 176.85 150.841 223.37 1 17.74 ? CE2 TRP 1101 A 1 HETATM 11 C CE3 TRP . . . G 4 174.695 150.604 224.417 1 17.74 ? CE3 TRP 1101 A 1 HETATM 12 C CZ2 TRP . . . G 4 177.104 149.489 223.481 1 17.74 ? CZ2 TRP 1101 A 1 HETATM 13 C CZ3 TRP . . . G 4 174.947 149.266 224.529 1 17.74 ? CZ3 TRP 1101 A 1 HETATM 14 C CH2 TRP . . . G 4 176.141 148.717 224.063 1 17.74 ? CH2 TRP 1101 A 1 HETATM 15 O OXT TRP . . . G 4 171.878 153.746 223.284 1 17.74 ? OXT TRP 1101 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 1319 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #