data_7DU1
#
_model_server_result.job_id            j79i7Ob6Mj48EHvQLoWh4A 
_model_server_result.datetime_utc      '2025-01-11 04:53:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7du1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    7DU1 
#
_exptl.entry_id    7DU1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.166 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1-propylimidazole-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          130.91 
_cell.angle_gamma         90 
_cell.entry_id            7DU1 
_cell.length_a            103.302 
_cell.length_b            79.58 
_cell.length_c            67.842 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DU1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,O 1 1 
B,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 83 A HIS 114 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc2 A ND1 HIS 85 A HIS 116 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc3 A OD2 ASP 87 A ASP 118 1_555 H ZN ZN . A ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc4 A NE2 HIS 122 A HIS 153 1_555 C ZN ZN . A ZN 301 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc5 A NE2 HIS 148 A HIS 179 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc6 A NE2 HIS 209 A HIS 240 1_555 H ZN ZN . A ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc7 A ND1 HIS 220 A HIS 251 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc8 C ZN ZN . A ZN 301 1_555 E O2 FMT . A FMT 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc9 C ZN ZN . A ZN 301 1_555 E O1 FMT . A FMT 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc10 C ZN ZN . A ZN 301 1_555 F O1 FMT . A FMT 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc11 D N05 HKR . A HKR 302 1_555 H ZN ZN . A ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc12 D O08 HKR . A HKR 302 1_555 H ZN ZN . A ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc13 G ZN ZN . A ZN 305 1_555 O O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc14 H ZN ZN . A ZN 306 1_555 O O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc15 B NE2 HIS 83 B HIS 114 1_555 I ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc16 B ND1 HIS 85 B HIS 116 1_555 I ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc17 B OD2 ASP 87 B ASP 118 1_555 J ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc18 B NE2 HIS 148 B HIS 179 1_555 I ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc19 B SG CYS 167 B CYS 198 1_555 J ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc20 B NE2 HIS 209 B HIS 240 1_555 J ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc21 B ND1 HIS 220 B HIS 251 1_555 K ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc22 I ZN ZN . B ZN 301 1_555 P O HOH . B HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc23 J ZN ZN . B ZN 302 1_555 L O07 HKR . B HKR 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc24 J ZN ZN . B ZN 302 1_555 L N05 HKR . B HKR 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc25 J ZN ZN . B ZN 302 1_555 P O HOH . B HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc26 K ZN ZN . B ZN 303 1_555 M O1 FMT . B FMT 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc27 K ZN ZN . B ZN 303 1_555 N O2 FMT . B FMT 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc28 K ZN ZN . B ZN 303 1_555 N O1 FMT . B FMT 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
#
_chem_comp.formula           'C7 H10 N2 O2' 
_chem_comp.formula_weight    154.166 
_chem_comp.id                HKR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1-propylimidazole-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C09 N03 HKR sing 154 n n 
C09 C10 HKR sing 155 n n 
C02 N03 HKR sing 156 n y 
C02 C01 HKR doub 157 n y 
N03 C04 HKR sing 158 n y 
O07 C06 HKR doub 159 n n 
C04 C06 HKR sing 160 n n 
C04 N05 HKR doub 161 n y 
C01 N05 HKR sing 162 n y 
C10 C11 HKR sing 163 n n 
C06 O08 HKR sing 164 n n 
C10 H1 HKR sing 165 n n 
C10 H2 HKR sing 166 n n 
C11 H3 HKR sing 167 n n 
C11 H4 HKR sing 168 n n 
C11 H5 HKR sing 169 n n 
C01 H6 HKR sing 170 n n 
C02 H7 HKR sing 171 n n 
O08 H8 HKR sing 172 n n 
C09 H9 HKR sing 173 n n 
C09 H10 HKR sing 174 n n 
#
_atom_sites.entry_id                     7DU1 
_atom_sites.fract_transf_matrix[1][1]    0.00968 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008388 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012566 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 301 305 ZN ZN . 
D 3 HKR A 1 302 401 HKR 319 . 
E 4 FMT A 1 303 501 FMT FMT . 
F 4 FMT A 1 304 502 FMT FMT . 
G 2 ZN A 1 305 303 ZN ZN . 
H 2 ZN A 1 306 304 ZN ZN . 
I 2 ZN B 1 301 301 ZN ZN . 
J 2 ZN B 1 302 302 ZN ZN . 
K 2 ZN B 1 303 306 ZN ZN . 
L 3 HKR B 1 304 402 HKR 319 . 
M 4 FMT B 1 305 503 FMT FMT . 
N 4 FMT B 1 306 504 FMT FMT . 
O 5 HOH A 1 401 111 HOH HOH . 
O 5 HOH A 2 402 97 HOH HOH . 
O 5 HOH A 3 403 60 HOH HOH . 
O 5 HOH A 4 404 33 HOH HOH . 
O 5 HOH A 5 405 96 HOH HOH . 
O 5 HOH A 6 406 69 HOH HOH . 
O 5 HOH A 7 407 98 HOH HOH . 
O 5 HOH A 8 408 25 HOH HOH . 
O 5 HOH A 9 409 2 HOH HOH . 
O 5 HOH A 10 410 112 HOH HOH . 
O 5 HOH A 11 411 29 HOH HOH . 
O 5 HOH A 12 412 102 HOH HOH . 
O 5 HOH A 13 413 35 HOH HOH . 
O 5 HOH A 14 414 42 HOH HOH . 
O 5 HOH A 15 415 31 HOH HOH . 
O 5 HOH A 16 416 27 HOH HOH . 
O 5 HOH A 17 417 24 HOH HOH . 
O 5 HOH A 18 418 91 HOH HOH . 
O 5 HOH A 19 419 34 HOH HOH . 
O 5 HOH A 20 420 4 HOH HOH . 
O 5 HOH A 21 421 51 HOH HOH . 
O 5 HOH A 22 422 12 HOH HOH . 
O 5 HOH A 23 423 79 HOH HOH . 
O 5 HOH A 24 424 113 HOH HOH . 
O 5 HOH A 25 425 6 HOH HOH . 
O 5 HOH A 26 426 13 HOH HOH . 
O 5 HOH A 27 427 48 HOH HOH . 
O 5 HOH A 28 428 11 HOH HOH . 
O 5 HOH A 29 429 23 HOH HOH . 
O 5 HOH A 30 430 50 HOH HOH . 
O 5 HOH A 31 431 30 HOH HOH . 
O 5 HOH A 32 432 20 HOH HOH . 
O 5 HOH A 33 433 75 HOH HOH . 
O 5 HOH A 34 434 92 HOH HOH . 
O 5 HOH A 35 435 90 HOH HOH . 
O 5 HOH A 36 436 26 HOH HOH . 
O 5 HOH A 37 437 7 HOH HOH . 
O 5 HOH A 38 438 3 HOH HOH . 
O 5 HOH A 39 439 61 HOH HOH . 
O 5 HOH A 40 440 78 HOH HOH . 
O 5 HOH A 41 441 82 HOH HOH . 
O 5 HOH A 42 442 105 HOH HOH . 
O 5 HOH A 43 443 74 HOH HOH . 
O 5 HOH A 44 444 21 HOH HOH . 
O 5 HOH A 45 445 81 HOH HOH . 
O 5 HOH A 46 446 70 HOH HOH . 
O 5 HOH A 47 447 66 HOH HOH . 
O 5 HOH A 48 448 63 HOH HOH . 
O 5 HOH A 49 449 53 HOH HOH . 
O 5 HOH A 50 450 93 HOH HOH . 
O 5 HOH A 51 451 46 HOH HOH . 
O 5 HOH A 52 452 95 HOH HOH . 
O 5 HOH A 53 453 40 HOH HOH . 
O 5 HOH A 54 454 80 HOH HOH . 
O 5 HOH A 55 455 109 HOH HOH . 
O 5 HOH A 56 456 5 HOH HOH . 
O 5 HOH A 57 457 14 HOH HOH . 
P 5 HOH B 1 401 104 HOH HOH . 
P 5 HOH B 2 402 58 HOH HOH . 
P 5 HOH B 3 403 71 HOH HOH . 
P 5 HOH B 4 404 85 HOH HOH . 
P 5 HOH B 5 405 9 HOH HOH . 
P 5 HOH B 6 406 59 HOH HOH . 
P 5 HOH B 7 407 101 HOH HOH . 
P 5 HOH B 8 408 68 HOH HOH . 
P 5 HOH B 9 409 1 HOH HOH . 
P 5 HOH B 10 410 17 HOH HOH . 
P 5 HOH B 11 411 19 HOH HOH . 
P 5 HOH B 12 412 87 HOH HOH . 
P 5 HOH B 13 413 22 HOH HOH . 
P 5 HOH B 14 414 36 HOH HOH . 
P 5 HOH B 15 415 94 HOH HOH . 
P 5 HOH B 16 416 18 HOH HOH . 
P 5 HOH B 17 417 43 HOH HOH . 
P 5 HOH B 18 418 100 HOH HOH . 
P 5 HOH B 19 419 72 HOH HOH . 
P 5 HOH B 20 420 37 HOH HOH . 
P 5 HOH B 21 421 67 HOH HOH . 
P 5 HOH B 22 422 10 HOH HOH . 
P 5 HOH B 23 423 99 HOH HOH . 
P 5 HOH B 24 424 8 HOH HOH . 
P 5 HOH B 25 425 88 HOH HOH . 
P 5 HOH B 26 426 108 HOH HOH . 
P 5 HOH B 27 427 16 HOH HOH . 
P 5 HOH B 28 428 15 HOH HOH . 
P 5 HOH B 29 429 56 HOH HOH . 
P 5 HOH B 30 430 89 HOH HOH . 
P 5 HOH B 31 431 110 HOH HOH . 
P 5 HOH B 32 432 103 HOH HOH . 
P 5 HOH B 33 433 76 HOH HOH . 
P 5 HOH B 34 434 77 HOH HOH . 
P 5 HOH B 35 435 39 HOH HOH . 
P 5 HOH B 36 436 62 HOH HOH . 
P 5 HOH B 37 437 55 HOH HOH . 
P 5 HOH B 38 438 41 HOH HOH . 
P 5 HOH B 39 439 73 HOH HOH . 
P 5 HOH B 40 440 106 HOH HOH . 
P 5 HOH B 41 441 49 HOH HOH . 
P 5 HOH B 42 442 28 HOH HOH . 
P 5 HOH B 43 443 38 HOH HOH . 
P 5 HOH B 44 444 86 HOH HOH . 
P 5 HOH B 45 445 65 HOH HOH . 
P 5 HOH B 46 446 47 HOH HOH . 
P 5 HOH B 47 447 107 HOH HOH . 
P 5 HOH B 48 448 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 HKR . . . D 3 31.222 20.346 -9.176 1 33.51 ? C10 HKR 302 A 1 
HETATM 2 C C11 HKR . . . D 3 32.151 21.01 -8.151 1 26.56 ? C11 HKR 302 A 1 
HETATM 3 C C01 HKR . . . D 3 33.082 16.171 -9.347 1 24.52 ? C01 HKR 302 A 1 
HETATM 4 C C02 HKR . . . D 3 33.251 17.463 -9.82 1 23.99 ? C02 HKR 302 A 1 
HETATM 5 N N03 HKR . . . D 3 32.067 18.067 -9.82 1 27.72 ? N03 HKR 302 A 1 
HETATM 6 C C04 HKR . . . D 3 31.165 17.185 -9.362 1 25.06 ? C04 HKR 302 A 1 
HETATM 7 N N05 HKR . . . D 3 31.798 16.046 -9.075 1 21.24 ? N05 HKR 302 A 1 
HETATM 8 C C06 HKR . . . D 3 29.645 17.367 -9.164 1 23.21 ? C06 HKR 302 A 1 
HETATM 9 O O07 HKR . . . D 3 28.992 18.326 -9.663 1 27.51 ? O07 HKR 302 A 1 
HETATM 10 O O08 HKR . . . D 3 28.996 16.525 -8.486 1 21.94 -1 O08 HKR 302 A 1 
HETATM 11 C C09 HKR . . . D 3 31.873 19.454 -10.25 1 23.48 ? C09 HKR 302 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           11 
#