data_7DU3 # _model_server_result.job_id xtbVvcmMzXWxRGLJrY-W1Q _model_server_result.datetime_utc '2024-12-12 11:00:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7du3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 7DU3 # _exptl.entry_id 7DU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DU3 _cell.length_a 112.82 _cell.length_b 115.8 _cell.length_c 132.47 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1 B,I,J,K,L,N 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x+1/2,-y+1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 56.41 57.9 66.235 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 52 A ASP 52 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc2 A OD1 ASP 69 A ASP 69 1_555 H MG MG . A MG 406 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc3 A OD2 ASP 69 A ASP 69 1_555 H MG MG . A MG 406 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc4 A OD1 ASP 97 A ASP 97 1_555 F MG MG . A MG 404 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc5 A OD2 ASP 97 A ASP 97 1_555 H MG MG . A MG 406 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc6 A OD1 ASP 144 A ASP 144 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc7 A OD1 ASP 233 A ASP 233 1_555 F MG MG . A MG 404 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc8 C O2G ANP . A ANP 401 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc9 C O1B ANP . A ANP 401 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc10 C O2A ANP . A ANP 401 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc11 C O1G ANP . A ANP 401 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc12 F MG MG . A MG 404 1_555 M O HOH . A HOH 512 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc13 F MG MG . A MG 404 1_555 M O HOH . A HOH 519 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc14 F MG MG . A MG 404 1_555 M O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc15 G MG MG . A MG 405 1_555 M O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc16 G MG MG . A MG 405 1_555 M O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc17 H MG MG . A MG 406 1_555 M O HOH . A HOH 506 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc18 H MG MG . A MG 406 1_555 M O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc19 B OD1 ASP 52 B ASP 52 1_555 J MG MG . B MG 402 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc20 B OD1 ASP 69 B ASP 69 1_555 K MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc21 B OD2 ASP 69 B ASP 69 1_555 K MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc22 B OD1 ASP 97 B ASP 97 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc23 B OD2 ASP 97 B ASP 97 1_555 K MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc24 B OD1 ASP 144 B ASP 144 1_555 L MG MG . B MG 404 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc25 B OD1 ASP 233 B ASP 233 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc26 I O2G ANP . B ANP 401 1_555 K MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc27 I O1G ANP . B ANP 401 1_555 L MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc28 I O1B ANP . B ANP 401 1_555 L MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc29 I O2A ANP . B ANP 401 1_555 L MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc30 J MG MG . B MG 402 1_555 N O HOH . B HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc31 J MG MG . B MG 402 1_555 N O HOH . B HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc32 J MG MG . B MG 402 1_555 N O HOH . B HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc33 K MG MG . B MG 403 1_555 N O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc34 K MG MG . B MG 403 1_555 N O HOH . B HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc35 L MG MG . B MG 404 1_555 N O HOH . B HOH 530 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc36 L MG MG . B MG 404 1_555 N O HOH . B HOH 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DU3 _atom_sites.fract_transf_matrix[1][1] 0.008864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 401 ANP ANP . D 3 PG4 A 1 402 402 PG4 PG4 . E 4 EDO A 1 403 403 EDO EDO . F 5 MG A 1 404 3 MG MG . G 5 MG A 1 405 5 MG MG . H 5 MG A 1 406 9 MG MG . I 2 ANP B 1 401 401 ANP ANP . J 5 MG B 1 402 2 MG MG . K 5 MG B 1 403 4 MG MG . L 5 MG B 1 404 8 MG MG . M 6 HOH A 1 501 191 HOH HOH . M 6 HOH A 2 502 82 HOH HOH . M 6 HOH A 3 503 166 HOH HOH . M 6 HOH A 4 504 189 HOH HOH . M 6 HOH A 5 505 215 HOH HOH . M 6 HOH A 6 506 169 HOH HOH . M 6 HOH A 7 507 41 HOH HOH . M 6 HOH A 8 508 110 HOH HOH . M 6 HOH A 9 509 102 HOH HOH . M 6 HOH A 10 510 163 HOH HOH . M 6 HOH A 11 511 14 HOH HOH . M 6 HOH A 12 512 133 HOH HOH . M 6 HOH A 13 513 114 HOH HOH . M 6 HOH A 14 514 29 HOH HOH . M 6 HOH A 15 515 126 HOH HOH . M 6 HOH A 16 516 196 HOH HOH . M 6 HOH A 17 517 30 HOH HOH . M 6 HOH A 18 518 49 HOH HOH . M 6 HOH A 19 519 131 HOH HOH . M 6 HOH A 20 520 13 HOH HOH . M 6 HOH A 21 521 132 HOH HOH . M 6 HOH A 22 522 86 HOH HOH . M 6 HOH A 23 523 214 HOH HOH . M 6 HOH A 24 524 176 HOH HOH . M 6 HOH A 25 525 18 HOH HOH . M 6 HOH A 26 526 226 HOH HOH . M 6 HOH A 27 527 182 HOH HOH . M 6 HOH A 28 528 113 HOH HOH . M 6 HOH A 29 529 175 HOH HOH . M 6 HOH A 30 530 232 HOH HOH . M 6 HOH A 31 531 197 HOH HOH . M 6 HOH A 32 532 3 HOH HOH . M 6 HOH A 33 533 165 HOH HOH . M 6 HOH A 34 534 61 HOH HOH . M 6 HOH A 35 535 190 HOH HOH . M 6 HOH A 36 536 134 HOH HOH . M 6 HOH A 37 537 194 HOH HOH . M 6 HOH A 38 538 220 HOH HOH . M 6 HOH A 39 539 164 HOH HOH . M 6 HOH A 40 540 168 HOH HOH . M 6 HOH A 41 541 60 HOH HOH . M 6 HOH A 42 542 121 HOH HOH . M 6 HOH A 43 543 162 HOH HOH . M 6 HOH A 44 544 203 HOH HOH . M 6 HOH A 45 545 223 HOH HOH . M 6 HOH A 46 546 207 HOH HOH . M 6 HOH A 47 547 47 HOH HOH . M 6 HOH A 48 548 177 HOH HOH . M 6 HOH A 49 549 135 HOH HOH . M 6 HOH A 50 550 221 HOH HOH . M 6 HOH A 51 551 205 HOH HOH . M 6 HOH A 52 552 246 HOH HOH . M 6 HOH A 53 553 233 HOH HOH . M 6 HOH A 54 554 180 HOH HOH . M 6 HOH A 55 555 178 HOH HOH . M 6 HOH A 56 556 185 HOH HOH . M 6 HOH A 57 557 199 HOH HOH . M 6 HOH A 58 558 179 HOH HOH . M 6 HOH A 59 559 242 HOH HOH . M 6 HOH A 60 560 183 HOH HOH . M 6 HOH A 61 561 129 HOH HOH . M 6 HOH A 62 562 167 HOH HOH . M 6 HOH A 63 563 173 HOH HOH . M 6 HOH A 64 564 128 HOH HOH . M 6 HOH A 65 565 245 HOH HOH . M 6 HOH A 66 566 187 HOH HOH . M 6 HOH A 67 567 243 HOH HOH . M 6 HOH A 68 568 186 HOH HOH . M 6 HOH A 69 569 217 HOH HOH . M 6 HOH A 70 570 184 HOH HOH . M 6 HOH A 71 571 225 HOH HOH . M 6 HOH A 72 572 240 HOH HOH . M 6 HOH A 73 573 206 HOH HOH . N 6 HOH B 1 501 104 HOH HOH . N 6 HOH B 2 502 139 HOH HOH . N 6 HOH B 3 503 146 HOH HOH . N 6 HOH B 4 504 216 HOH HOH . N 6 HOH B 5 505 124 HOH HOH . N 6 HOH B 6 506 161 HOH HOH . N 6 HOH B 7 507 19 HOH HOH . N 6 HOH B 8 508 149 HOH HOH . N 6 HOH B 9 509 142 HOH HOH . N 6 HOH B 10 510 202 HOH HOH . N 6 HOH B 11 511 53 HOH HOH . N 6 HOH B 12 512 138 HOH HOH . N 6 HOH B 13 513 90 HOH HOH . N 6 HOH B 14 514 195 HOH HOH . N 6 HOH B 15 515 112 HOH HOH . N 6 HOH B 16 516 17 HOH HOH . N 6 HOH B 17 517 198 HOH HOH . N 6 HOH B 18 518 137 HOH HOH . N 6 HOH B 19 519 244 HOH HOH . N 6 HOH B 20 520 141 HOH HOH . N 6 HOH B 21 521 201 HOH HOH . N 6 HOH B 22 522 38 HOH HOH . N 6 HOH B 23 523 145 HOH HOH . N 6 HOH B 24 524 45 HOH HOH . N 6 HOH B 25 525 77 HOH HOH . N 6 HOH B 26 526 75 HOH HOH . N 6 HOH B 27 527 210 HOH HOH . N 6 HOH B 28 528 25 HOH HOH . N 6 HOH B 29 529 12 HOH HOH . N 6 HOH B 30 530 147 HOH HOH . N 6 HOH B 31 531 136 HOH HOH . N 6 HOH B 32 532 59 HOH HOH . N 6 HOH B 33 533 26 HOH HOH . N 6 HOH B 34 534 127 HOH HOH . N 6 HOH B 35 535 157 HOH HOH . N 6 HOH B 36 536 58 HOH HOH . N 6 HOH B 37 537 148 HOH HOH . N 6 HOH B 38 538 16 HOH HOH . N 6 HOH B 39 539 159 HOH HOH . N 6 HOH B 40 540 140 HOH HOH . N 6 HOH B 41 541 224 HOH HOH . N 6 HOH B 42 542 211 HOH HOH . N 6 HOH B 43 543 154 HOH HOH . N 6 HOH B 44 544 209 HOH HOH . N 6 HOH B 45 545 200 HOH HOH . N 6 HOH B 46 546 156 HOH HOH . N 6 HOH B 47 547 80 HOH HOH . N 6 HOH B 48 548 120 HOH HOH . N 6 HOH B 49 549 144 HOH HOH . N 6 HOH B 50 550 151 HOH HOH . N 6 HOH B 51 551 91 HOH HOH . N 6 HOH B 52 552 247 HOH HOH . N 6 HOH B 53 553 160 HOH HOH . N 6 HOH B 54 554 56 HOH HOH . N 6 HOH B 55 555 152 HOH HOH . N 6 HOH B 56 556 85 HOH HOH . N 6 HOH B 57 557 94 HOH HOH . N 6 HOH B 58 558 143 HOH HOH . N 6 HOH B 59 559 239 HOH HOH . N 6 HOH B 60 560 172 HOH HOH . N 6 HOH B 61 561 158 HOH HOH . N 6 HOH B 62 562 171 HOH HOH . N 6 HOH B 63 563 188 HOH HOH . N 6 HOH B 64 564 170 HOH HOH . N 6 HOH B 65 565 208 HOH HOH . N 6 HOH B 66 566 227 HOH HOH . N 6 HOH B 67 567 119 HOH HOH . N 6 HOH B 68 568 155 HOH HOH . N 6 HOH B 69 569 229 HOH HOH . N 6 HOH B 70 570 150 HOH HOH . N 6 HOH B 71 571 204 HOH HOH . N 6 HOH B 72 572 238 HOH HOH . N 6 HOH B 73 573 212 HOH HOH . N 6 HOH B 74 574 248 HOH HOH . N 6 HOH B 75 575 213 HOH HOH . N 6 HOH B 76 576 235 HOH HOH . N 6 HOH B 77 577 237 HOH HOH . N 6 HOH B 78 578 231 HOH HOH . N 6 HOH B 79 579 241 HOH HOH . N 6 HOH B 80 580 130 HOH HOH . N 6 HOH B 81 581 234 HOH HOH . N 6 HOH B 82 582 222 HOH HOH . N 6 HOH B 83 583 230 HOH HOH . N 6 HOH B 84 584 83 HOH HOH . N 6 HOH B 85 585 153 HOH HOH . N 6 HOH B 86 586 181 HOH HOH . N 6 HOH B 87 587 228 HOH HOH . N 6 HOH B 88 588 236 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 59.023 _atom_site.Cartn_y 31.863 _atom_site.Cartn_z 48.279 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #