data_7DU9 # _model_server_result.job_id QpVfBwImKWIQv_x7Xeweng _model_server_result.datetime_utc '2024-11-14 03:58:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7du9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1101}' # _entry.id 7DU9 # _exptl.entry_id 7DU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 533.6 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Pralsetinib _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.72 _cell.angle_gamma 90 _cell.entry_id 7DU9 _cell.length_a 50.887 _cell.length_b 80.577 _cell.length_c 79.866 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C27 H32 F N9 O2' _chem_comp.formula_weight 533.6 _chem_comp.id Q4J _chem_comp.mon_nstd_flag . _chem_comp.name Pralsetinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BLU-667;trans-N-{(1S)-1-[6-(4-fluoro-1H-pyrazol-1-yl)pyridin-3-yl]ethyl}-1-methoxy-4-{4-methyl-6-[(5-methyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl}cyclohexane-1-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBI CBJ Q4J sing 277 n y CBI NBH Q4J doub 278 n y FBL CBJ Q4J sing 279 n n CBJ CBK Q4J doub 280 n y NBH NBG Q4J sing 281 n y NBG CBK Q4J sing 282 n y NBG CBD Q4J sing 283 n n CBD CBC Q4J doub 284 n y CBD NBE Q4J sing 285 n y CBC CBB Q4J sing 286 n y NBE CBF Q4J doub 287 n y CBB CAZ Q4J doub 288 n y CBF CAZ Q4J sing 289 n y CAZ CAY Q4J sing 290 n n CAY CBA Q4J sing 291 n n CAY NAW Q4J sing 292 n n OAX CAT Q4J doub 293 n n NAW CAT Q4J sing 294 n n CAT CAQ Q4J sing 295 n n CAR CAQ Q4J sing 296 n n CAR CAS Q4J sing 297 n n CAQ CAP Q4J sing 298 n n CAQ OAU Q4J sing 299 n n CAS CAN Q4J sing 300 n n CAP CAO Q4J sing 301 n n CAO CAN Q4J sing 302 n n OAU CAV Q4J sing 303 n n CAN C2 Q4J sing 304 n n C2 N3 Q4J doub 305 n y C2 N1 Q4J sing 306 n y N3 C4 Q4J sing 307 n y CBM CAB Q4J sing 308 n n N1 C6 Q4J doub 309 n y CAA CAB Q4J doub 310 n y CAA CAE Q4J sing 311 n y C4 CAM Q4J sing 312 n n C4 C5 Q4J doub 313 n y CAB NAC Q4J sing 314 n y C6 C5 Q4J sing 315 n y C6 NAF Q4J sing 316 n n CAE NAF Q4J sing 317 n n CAE NAD Q4J doub 318 n y NAC NAD Q4J sing 319 n y CAA H1 Q4J sing 320 n n CBA H2 Q4J sing 321 n n CBA H3 Q4J sing 322 n n CBA H4 Q4J sing 323 n n CBB H5 Q4J sing 324 n n CBC H6 Q4J sing 325 n n CBM H7 Q4J sing 326 n n CBM H8 Q4J sing 327 n n CBM H9 Q4J sing 328 n n NAC H10 Q4J sing 329 n n NAF H11 Q4J sing 330 n n C5 H12 Q4J sing 331 n n CAM H13 Q4J sing 332 n n CAM H14 Q4J sing 333 n n CAM H15 Q4J sing 334 n n CAN H16 Q4J sing 335 n n CAS H17 Q4J sing 336 n n CAS H18 Q4J sing 337 n n CAR H19 Q4J sing 338 n n CAR H20 Q4J sing 339 n n CAO H21 Q4J sing 340 n n CAO H22 Q4J sing 341 n n CAP H23 Q4J sing 342 n n CAP H24 Q4J sing 343 n n CAV H25 Q4J sing 344 n n CAV H26 Q4J sing 345 n n CAV H27 Q4J sing 346 n n NAW H28 Q4J sing 347 n n CAY H29 Q4J sing 348 n n CBF H30 Q4J sing 349 n n CBI H31 Q4J sing 350 n n CBK H32 Q4J sing 351 n n # _atom_sites.entry_id 7DU9 _atom_sites.fract_transf_matrix[1][1] 0.019651 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003366 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012703 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Q4J A 1 1101 1 Q4J INX . D 2 Q4J B 1 1101 2 Q4J INX . E 3 HOH A 1 1201 32 HOH HOH . E 3 HOH A 2 1202 33 HOH HOH . E 3 HOH A 3 1203 116 HOH HOH . E 3 HOH A 4 1204 100 HOH HOH . E 3 HOH A 5 1205 197 HOH HOH . E 3 HOH A 6 1206 192 HOH HOH . E 3 HOH A 7 1207 225 HOH HOH . E 3 HOH A 8 1208 236 HOH HOH . E 3 HOH A 9 1209 75 HOH HOH . E 3 HOH A 10 1210 18 HOH HOH . E 3 HOH A 11 1211 81 HOH HOH . E 3 HOH A 12 1212 27 HOH HOH . E 3 HOH A 13 1213 51 HOH HOH . E 3 HOH A 14 1214 158 HOH HOH . E 3 HOH A 15 1215 72 HOH HOH . E 3 HOH A 16 1216 125 HOH HOH . E 3 HOH A 17 1217 87 HOH HOH . E 3 HOH A 18 1218 150 HOH HOH . E 3 HOH A 19 1219 26 HOH HOH . E 3 HOH A 20 1220 2 HOH HOH . E 3 HOH A 21 1221 106 HOH HOH . E 3 HOH A 22 1222 84 HOH HOH . E 3 HOH A 23 1223 122 HOH HOH . E 3 HOH A 24 1224 74 HOH HOH . E 3 HOH A 25 1225 174 HOH HOH . E 3 HOH A 26 1226 6 HOH HOH . E 3 HOH A 27 1227 64 HOH HOH . E 3 HOH A 28 1228 45 HOH HOH . E 3 HOH A 29 1229 60 HOH HOH . E 3 HOH A 30 1230 9 HOH HOH . E 3 HOH A 31 1231 34 HOH HOH . E 3 HOH A 32 1232 73 HOH HOH . E 3 HOH A 33 1233 187 HOH HOH . E 3 HOH A 34 1234 227 HOH HOH . E 3 HOH A 35 1235 114 HOH HOH . E 3 HOH A 36 1236 88 HOH HOH . E 3 HOH A 37 1237 195 HOH HOH . E 3 HOH A 38 1238 141 HOH HOH . E 3 HOH A 39 1239 171 HOH HOH . E 3 HOH A 40 1240 101 HOH HOH . E 3 HOH A 41 1241 140 HOH HOH . E 3 HOH A 42 1242 170 HOH HOH . E 3 HOH A 43 1243 38 HOH HOH . E 3 HOH A 44 1244 46 HOH HOH . E 3 HOH A 45 1245 196 HOH HOH . E 3 HOH A 46 1246 129 HOH HOH . E 3 HOH A 47 1247 137 HOH HOH . E 3 HOH A 48 1248 13 HOH HOH . E 3 HOH A 49 1249 36 HOH HOH . E 3 HOH A 50 1250 89 HOH HOH . E 3 HOH A 51 1251 118 HOH HOH . E 3 HOH A 52 1252 226 HOH HOH . E 3 HOH A 53 1253 78 HOH HOH . E 3 HOH A 54 1254 23 HOH HOH . E 3 HOH A 55 1255 183 HOH HOH . E 3 HOH A 56 1256 56 HOH HOH . E 3 HOH A 57 1257 173 HOH HOH . E 3 HOH A 58 1258 63 HOH HOH . E 3 HOH A 59 1259 80 HOH HOH . E 3 HOH A 60 1260 92 HOH HOH . E 3 HOH A 61 1261 180 HOH HOH . E 3 HOH A 62 1262 14 HOH HOH . E 3 HOH A 63 1263 107 HOH HOH . E 3 HOH A 64 1264 50 HOH HOH . E 3 HOH A 65 1265 230 HOH HOH . E 3 HOH A 66 1266 176 HOH HOH . E 3 HOH A 67 1267 199 HOH HOH . E 3 HOH A 68 1268 193 HOH HOH . E 3 HOH A 69 1269 175 HOH HOH . E 3 HOH A 70 1270 5 HOH HOH . E 3 HOH A 71 1271 179 HOH HOH . E 3 HOH A 72 1272 95 HOH HOH . E 3 HOH A 73 1273 178 HOH HOH . E 3 HOH A 74 1274 48 HOH HOH . E 3 HOH A 75 1275 85 HOH HOH . E 3 HOH A 76 1276 233 HOH HOH . E 3 HOH A 77 1277 70 HOH HOH . E 3 HOH A 78 1278 200 HOH HOH . E 3 HOH A 79 1279 234 HOH HOH . E 3 HOH A 80 1280 54 HOH HOH . E 3 HOH A 81 1281 109 HOH HOH . E 3 HOH A 82 1282 31 HOH HOH . E 3 HOH A 83 1283 11 HOH HOH . E 3 HOH A 84 1284 184 HOH HOH . E 3 HOH A 85 1285 154 HOH HOH . E 3 HOH A 86 1286 16 HOH HOH . E 3 HOH A 87 1287 232 HOH HOH . E 3 HOH A 88 1288 188 HOH HOH . E 3 HOH A 89 1289 189 HOH HOH . E 3 HOH A 90 1290 198 HOH HOH . E 3 HOH A 91 1291 228 HOH HOH . E 3 HOH A 92 1292 186 HOH HOH . E 3 HOH A 93 1293 185 HOH HOH . E 3 HOH A 94 1294 148 HOH HOH . E 3 HOH A 95 1295 201 HOH HOH . E 3 HOH A 96 1296 229 HOH HOH . E 3 HOH A 97 1297 76 HOH HOH . E 3 HOH A 98 1298 191 HOH HOH . E 3 HOH A 99 1299 194 HOH HOH . E 3 HOH A 100 1300 202 HOH HOH . E 3 HOH A 101 1301 214 HOH HOH . E 3 HOH A 102 1302 190 HOH HOH . F 3 HOH B 1 1201 203 HOH HOH . F 3 HOH B 2 1202 222 HOH HOH . F 3 HOH B 3 1203 25 HOH HOH . F 3 HOH B 4 1204 218 HOH HOH . F 3 HOH B 5 1205 47 HOH HOH . F 3 HOH B 6 1206 58 HOH HOH . F 3 HOH B 7 1207 86 HOH HOH . F 3 HOH B 8 1208 111 HOH HOH . F 3 HOH B 9 1209 102 HOH HOH . F 3 HOH B 10 1210 223 HOH HOH . F 3 HOH B 11 1211 68 HOH HOH . F 3 HOH B 12 1212 8 HOH HOH . F 3 HOH B 13 1213 224 HOH HOH . F 3 HOH B 14 1214 103 HOH HOH . F 3 HOH B 15 1215 167 HOH HOH . F 3 HOH B 16 1216 108 HOH HOH . F 3 HOH B 17 1217 215 HOH HOH . F 3 HOH B 18 1218 146 HOH HOH . F 3 HOH B 19 1219 177 HOH HOH . F 3 HOH B 20 1220 231 HOH HOH . F 3 HOH B 21 1221 49 HOH HOH . F 3 HOH B 22 1222 3 HOH HOH . F 3 HOH B 23 1223 59 HOH HOH . F 3 HOH B 24 1224 19 HOH HOH . F 3 HOH B 25 1225 79 HOH HOH . F 3 HOH B 26 1226 57 HOH HOH . F 3 HOH B 27 1227 22 HOH HOH . F 3 HOH B 28 1228 42 HOH HOH . F 3 HOH B 29 1229 204 HOH HOH . F 3 HOH B 30 1230 61 HOH HOH . F 3 HOH B 31 1231 55 HOH HOH . F 3 HOH B 32 1232 37 HOH HOH . F 3 HOH B 33 1233 28 HOH HOH . F 3 HOH B 34 1234 4 HOH HOH . F 3 HOH B 35 1235 142 HOH HOH . F 3 HOH B 36 1236 145 HOH HOH . F 3 HOH B 37 1237 20 HOH HOH . F 3 HOH B 38 1238 168 HOH HOH . F 3 HOH B 39 1239 24 HOH HOH . F 3 HOH B 40 1240 182 HOH HOH . F 3 HOH B 41 1241 39 HOH HOH . F 3 HOH B 42 1242 181 HOH HOH . F 3 HOH B 43 1243 12 HOH HOH . F 3 HOH B 44 1244 52 HOH HOH . F 3 HOH B 45 1245 211 HOH HOH . F 3 HOH B 46 1246 41 HOH HOH . F 3 HOH B 47 1247 219 HOH HOH . F 3 HOH B 48 1248 69 HOH HOH . F 3 HOH B 49 1249 44 HOH HOH . F 3 HOH B 50 1250 104 HOH HOH . F 3 HOH B 51 1251 126 HOH HOH . F 3 HOH B 52 1252 21 HOH HOH . F 3 HOH B 53 1253 120 HOH HOH . F 3 HOH B 54 1254 212 HOH HOH . F 3 HOH B 55 1255 237 HOH HOH . F 3 HOH B 56 1256 235 HOH HOH . F 3 HOH B 57 1257 210 HOH HOH . F 3 HOH B 58 1258 207 HOH HOH . F 3 HOH B 59 1259 121 HOH HOH . F 3 HOH B 60 1260 35 HOH HOH . F 3 HOH B 61 1261 216 HOH HOH . F 3 HOH B 62 1262 206 HOH HOH . F 3 HOH B 63 1263 213 HOH HOH . F 3 HOH B 64 1264 209 HOH HOH . F 3 HOH B 65 1265 15 HOH HOH . F 3 HOH B 66 1266 220 HOH HOH . F 3 HOH B 67 1267 131 HOH HOH . F 3 HOH B 68 1268 205 HOH HOH . F 3 HOH B 69 1269 217 HOH HOH . F 3 HOH B 70 1270 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Q4J . . . D 2 24.668 15.208 -26.561 1 24.03 ? CAA Q4J 1101 B 1 HETATM 2 C CBA Q4J . . . D 2 18.69 9.351 -20.516 1 31.25 ? CBA Q4J 1101 B 1 HETATM 3 C CAB Q4J . . . D 2 25.965 14.835 -26.481 1 22.58 ? CAB Q4J 1101 B 1 HETATM 4 C CBB Q4J . . . D 2 21.311 9.242 -18.784 1 33.72 ? CBB Q4J 1101 B 1 HETATM 5 C CBC Q4J . . . D 2 22.542 9.223 -18.119 1 31.7 ? CBC Q4J 1101 B 1 HETATM 6 C CBD Q4J . . . D 2 23.372 10.357 -18.148 1 32.32 ? CBD Q4J 1101 B 1 HETATM 7 C CBM Q4J . . . D 2 26.558 13.821 -25.539 1 22.29 ? CBM Q4J 1101 B 1 HETATM 8 N NAC Q4J . . . D 2 26.647 15.518 -27.413 1 23.98 ? NAC Q4J 1101 B 1 HETATM 9 N NAD Q4J . . . D 2 25.749 16.348 -28.079 1 22.4 ? NAD Q4J 1101 B 1 HETATM 10 C CAE Q4J . . . D 2 24.546 16.183 -27.581 1 24.88 ? CAE Q4J 1101 B 1 HETATM 11 N NAF Q4J . . . D 2 23.439 16.912 -28.094 1 26.4 ? NAF Q4J 1101 B 1 HETATM 12 C C6 Q4J . . . D 2 22.106 16.854 -27.677 1 24.23 ? C6 Q4J 1101 B 1 HETATM 13 N N1 Q4J . . . D 2 21.695 16.047 -26.695 1 23.83 ? N1 Q4J 1101 B 1 HETATM 14 C C5 Q4J . . . D 2 21.125 17.665 -28.303 1 23.55 ? C5 Q4J 1101 B 1 HETATM 15 C C4 Q4J . . . D 2 19.798 17.581 -27.86 1 27.13 ? C4 Q4J 1101 B 1 HETATM 16 C CAM Q4J . . . D 2 18.719 18.417 -28.502 1 27.39 ? CAM Q4J 1101 B 1 HETATM 17 N N3 Q4J . . . D 2 19.489 16.735 -26.866 1 27.55 ? N3 Q4J 1101 B 1 HETATM 18 C C2 Q4J . . . D 2 20.428 15.978 -26.302 1 25.57 ? C2 Q4J 1101 B 1 HETATM 19 C CAN Q4J . . . D 2 20.035 15.058 -25.176 1 26.81 ? CAN Q4J 1101 B 1 HETATM 20 C CAS Q4J . . . D 2 21.246 14.485 -24.408 1 27.48 ? CAS Q4J 1101 B 1 HETATM 21 C CAR Q4J . . . D 2 20.753 13.671 -23.207 1 26.67 ? CAR Q4J 1101 B 1 HETATM 22 C CAO Q4J . . . D 2 19.228 13.875 -25.719 1 28.89 ? CAO Q4J 1101 B 1 HETATM 23 C CAP Q4J . . . D 2 18.665 13.09 -24.525 1 31.46 ? CAP Q4J 1101 B 1 HETATM 24 C CAQ Q4J . . . D 2 19.795 12.54 -23.607 1 30.09 ? CAQ Q4J 1101 B 1 HETATM 25 O OAU Q4J . . . D 2 20.626 11.596 -24.302 1 31.02 ? OAU Q4J 1101 B 1 HETATM 26 C CAV Q4J . . . D 2 20.107 10.343 -24.778 1 31.18 ? CAV Q4J 1101 B 1 HETATM 27 C CAT Q4J . . . D 2 19.269 12.031 -22.275 1 31.57 ? CAT Q4J 1101 B 1 HETATM 28 O OAX Q4J . . . D 2 18.238 12.474 -21.806 1 30.75 ? OAX Q4J 1101 B 1 HETATM 29 N NAW Q4J . . . D 2 19.992 11.103 -21.6 1 35.37 ? NAW Q4J 1101 B 1 HETATM 30 C CAY Q4J . . . D 2 19.603 10.567 -20.275 1 31.13 ? CAY Q4J 1101 B 1 HETATM 31 C CAZ Q4J . . . D 2 20.91 10.4 -19.485 1 31.92 ? CAZ Q4J 1101 B 1 HETATM 32 C CBF Q4J . . . D 2 21.804 11.486 -19.462 1 29.75 ? CBF Q4J 1101 B 1 HETATM 33 N NBE Q4J . . . D 2 22.968 11.432 -18.826 1 31.06 ? NBE Q4J 1101 B 1 HETATM 34 N NBG Q4J . . . D 2 24.622 10.366 -17.498 1 33.75 ? NBG Q4J 1101 B 1 HETATM 35 N NBH Q4J . . . D 2 25.098 9.394 -16.603 1 38.2 ? NBH Q4J 1101 B 1 HETATM 36 C CBI Q4J . . . D 2 26.296 9.733 -16.22 1 33.81 ? CBI Q4J 1101 B 1 HETATM 37 C CBJ Q4J . . . D 2 26.644 10.927 -16.849 1 30.01 ? CBJ Q4J 1101 B 1 HETATM 38 F FBL Q4J . . . D 2 27.811 11.582 -16.689 1 30.09 ? FBL Q4J 1101 B 1 HETATM 39 C CBK Q4J . . . D 2 25.608 11.303 -17.632 1 30.46 ? CBK Q4J 1101 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #