data_7DUW # _model_server_result.job_id blYW1V4BgZ0NkVJgh6MMQg _model_server_result.datetime_utc '2024-12-03 19:07:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7duw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 7DUW # _exptl.entry_id 7DUW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 851.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-3-[[(2~{S})-3-[(2~{S})-2,6-bis(azanyl)hexanoyl]oxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxy-2-hexadecanoyloxy-propyl] hexadecanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DUW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DUW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C44 H87 N2 O11 P' _chem_comp.formula_weight 851.142 _chem_comp.id EV9 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-3-[[(2~{S})-3-[(2~{S})-2,6-bis(azanyl)hexanoyl]oxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxy-2-hexadecanoyloxy-propyl] hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 P23 EV9 doub 83 n n C19 O18 EV9 sing 84 n n C19 C20 EV9 sing 85 n n O18 C16 EV9 sing 86 n n P23 O22 EV9 sing 87 n n P23 O25 EV9 sing 88 n n P23 O26 EV9 sing 89 n n O43 C42 EV9 doub 90 n n O22 C21 EV9 sing 91 n n O41 C20 EV9 sing 92 n n O41 C42 EV9 sing 93 n n C15 C16 EV9 sing 94 n n C15 C14 EV9 sing 95 n n C21 C20 EV9 sing 96 n n C16 O17 EV9 doub 97 n n C42 C44 EV9 sing 98 n n O26 C27 EV9 sing 99 n n C13 C14 EV9 sing 100 n n C13 C12 EV9 sing 101 n n C12 C11 EV9 sing 102 n n C10 C11 EV9 sing 103 n n C10 C09 EV9 sing 104 n n C44 C45 EV9 sing 105 n n C27 C28 EV9 sing 106 n n C45 C46 EV9 sing 107 n n C09 C08 EV9 sing 108 n n O40 C28 EV9 sing 109 n n C28 C29 EV9 sing 110 n n C46 C47 EV9 sing 111 n n C08 C07 EV9 sing 112 n n C47 C48 EV9 sing 113 n n N38 C37 EV9 sing 114 n n C29 O30 EV9 sing 115 n n C07 C06 EV9 sing 116 n n O30 C31 EV9 sing 117 n n C37 C36 EV9 sing 118 n n C48 C49 EV9 sing 119 n n C49 C50 EV9 sing 120 n n C06 C05 EV9 sing 121 n n C36 C35 EV9 sing 122 n n C35 C34 EV9 sing 123 n n C31 O32 EV9 doub 124 n n C31 C33 EV9 sing 125 n n C05 C04 EV9 sing 126 n n C33 C34 EV9 sing 127 n n C33 N39 EV9 sing 128 n n C50 C51 EV9 sing 129 n n C51 C52 EV9 sing 130 n n C04 C03 EV9 sing 131 n n C53 C52 EV9 sing 132 n n C53 C54 EV9 sing 133 n n C03 C02 EV9 sing 134 n n C54 C55 EV9 sing 135 n n C02 C01 EV9 sing 136 n n C55 C56 EV9 sing 137 n n C56 C57 EV9 sing 138 n n C57 C58 EV9 sing 139 n n C10 H1 EV9 sing 140 n n C10 H2 EV9 sing 141 n n C13 H3 EV9 sing 142 n n C13 H4 EV9 sing 143 n n C15 H5 EV9 sing 144 n n C15 H6 EV9 sing 145 n n C20 H7 EV9 sing 146 n n C21 H8 EV9 sing 147 n n C21 H9 EV9 sing 148 n n C28 H10 EV9 sing 149 n n C01 H11 EV9 sing 150 n n C01 H12 EV9 sing 151 n n C01 H13 EV9 sing 152 n n C02 H14 EV9 sing 153 n n C02 H15 EV9 sing 154 n n C03 H16 EV9 sing 155 n n C03 H17 EV9 sing 156 n n C04 H18 EV9 sing 157 n n C04 H19 EV9 sing 158 n n C05 H20 EV9 sing 159 n n C05 H21 EV9 sing 160 n n C06 H22 EV9 sing 161 n n C06 H23 EV9 sing 162 n n C07 H24 EV9 sing 163 n n C07 H25 EV9 sing 164 n n C08 H26 EV9 sing 165 n n C08 H27 EV9 sing 166 n n C09 H28 EV9 sing 167 n n C09 H29 EV9 sing 168 n n C11 H30 EV9 sing 169 n n C11 H31 EV9 sing 170 n n C12 H32 EV9 sing 171 n n C12 H33 EV9 sing 172 n n C14 H34 EV9 sing 173 n n C14 H35 EV9 sing 174 n n C19 H36 EV9 sing 175 n n C19 H37 EV9 sing 176 n n C27 H38 EV9 sing 177 n n C27 H39 EV9 sing 178 n n C29 H40 EV9 sing 179 n n C29 H41 EV9 sing 180 n n C33 H42 EV9 sing 181 n n C34 H43 EV9 sing 182 n n C34 H44 EV9 sing 183 n n C35 H45 EV9 sing 184 n n C35 H46 EV9 sing 185 n n C36 H47 EV9 sing 186 n n C36 H48 EV9 sing 187 n n C37 H49 EV9 sing 188 n n C37 H50 EV9 sing 189 n n C44 H51 EV9 sing 190 n n C44 H52 EV9 sing 191 n n C45 H53 EV9 sing 192 n n C45 H54 EV9 sing 193 n n C46 H55 EV9 sing 194 n n C46 H56 EV9 sing 195 n n C47 H57 EV9 sing 196 n n C47 H58 EV9 sing 197 n n C48 H59 EV9 sing 198 n n C48 H60 EV9 sing 199 n n C49 H61 EV9 sing 200 n n C49 H62 EV9 sing 201 n n C50 H63 EV9 sing 202 n n C50 H64 EV9 sing 203 n n C51 H65 EV9 sing 204 n n C51 H66 EV9 sing 205 n n C52 H67 EV9 sing 206 n n C52 H68 EV9 sing 207 n n C53 H69 EV9 sing 208 n n C53 H70 EV9 sing 209 n n C54 H71 EV9 sing 210 n n C54 H72 EV9 sing 211 n n C55 H73 EV9 sing 212 n n C55 H74 EV9 sing 213 n n C56 H75 EV9 sing 214 n n C56 H76 EV9 sing 215 n n C57 H77 EV9 sing 216 n n C57 H78 EV9 sing 217 n n C58 H79 EV9 sing 218 n n C58 H80 EV9 sing 219 n n C58 H81 EV9 sing 220 n n N38 H82 EV9 sing 221 n n N38 H83 EV9 sing 222 n n N39 H85 EV9 sing 223 n n N39 H86 EV9 sing 224 n n O25 H88 EV9 sing 225 n n O40 H89 EV9 sing 226 n n # _atom_sites.entry_id 7DUW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LMT A 1 901 901 LMT LMT . D 3 EV9 A 1 902 902 EV9 EV9 . E 3 EV9 A 1 903 905 EV9 EV9 . F 4 LHG A 1 904 1006 LHG LHG . G 5 PGT A 1 905 1008 PGT PGT . H 6 J4U A 1 906 1000 J4U UNL . I 6 J4U B 1 901 1000 J4U UNL . J 2 LMT B 1 902 901 LMT LMT . K 3 EV9 B 1 903 902 EV9 EV9 . L 3 EV9 B 1 904 905 EV9 EV9 . M 4 LHG B 1 905 1006 LHG LHG . N 5 PGT B 1 906 1008 PGT PGT . O 7 HOH A 1 1001 998 HOH HOH . P 7 HOH B 1 1001 998 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EV9 . . . E 3 138.362 176.157 179.566 1 47.72 ? C10 EV9 903 A 1 HETATM 2 C C13 EV9 . . . E 3 136.338 179.355 179.649 1 47.72 ? C13 EV9 903 A 1 HETATM 3 C C15 EV9 . . . E 3 136.183 181.891 179.701 1 47.72 ? C15 EV9 903 A 1 HETATM 4 C C20 EV9 . . . E 3 138.072 185.383 181.145 1 47.72 ? C20 EV9 903 A 1 HETATM 5 C C21 EV9 . . . E 3 138.327 186.792 181.675 1 47.72 ? C21 EV9 903 A 1 HETATM 6 C C28 EV9 . . . E 3 139.84 190.208 183.968 1 47.72 ? C28 EV9 903 A 1 HETATM 7 C C01 EV9 . . . E 3 132.41 170.348 180.675 0 47.72 ? C01 EV9 903 A 1 HETATM 8 C C02 EV9 . . . E 3 132.379 171.869 180.581 0 47.72 ? C02 EV9 903 A 1 HETATM 9 C C03 EV9 . . . E 3 132.685 172.541 181.913 1 47.72 ? C03 EV9 903 A 1 HETATM 10 C C04 EV9 . . . E 3 134.03 173.26 181.886 1 47.72 ? C04 EV9 903 A 1 HETATM 11 C C05 EV9 . . . E 3 135.199 172.284 181.835 1 47.72 ? C05 EV9 903 A 1 HETATM 12 C C06 EV9 . . . E 3 136.381 172.854 181.062 1 47.72 ? C06 EV9 903 A 1 HETATM 13 C C07 EV9 . . . E 3 137.516 173.28 181.981 1 47.72 ? C07 EV9 903 A 1 HETATM 14 C C08 EV9 . . . E 3 138.124 174.603 181.539 1 47.72 ? C08 EV9 903 A 1 HETATM 15 C C09 EV9 . . . E 3 138.258 174.713 180.027 1 47.72 ? C09 EV9 903 A 1 HETATM 16 C C11 EV9 . . . E 3 137.203 177.006 180.086 1 47.72 ? C11 EV9 903 A 1 HETATM 17 C C12 EV9 . . . E 3 137.532 178.495 180.073 1 47.72 ? C12 EV9 903 A 1 HETATM 18 C C14 EV9 . . . E 3 136.194 180.601 180.528 1 47.72 ? C14 EV9 903 A 1 HETATM 19 C C16 EV9 . . . E 3 135.619 183.082 180.492 1 47.72 ? C16 EV9 903 A 1 HETATM 20 C C19 EV9 . . . E 3 136.607 185.016 181.396 1 47.72 ? C19 EV9 903 A 1 HETATM 21 C C27 EV9 . . . E 3 138.339 190.121 184.235 1 47.72 ? C27 EV9 903 A 1 HETATM 22 C C29 EV9 . . . E 3 140.435 191.368 184.763 1 47.72 ? C29 EV9 903 A 1 HETATM 23 C C31 EV9 . . . E 3 142.537 191.136 185.797 1 47.72 ? C31 EV9 903 A 1 HETATM 24 C C33 EV9 . . . E 3 143.378 191.048 187.071 1 47.72 ? C33 EV9 903 A 1 HETATM 25 C C34 EV9 . . . E 3 142.454 191.044 188.285 1 47.72 ? C34 EV9 903 A 1 HETATM 26 C C35 EV9 . . . E 3 142.516 189.729 189.059 1 47.72 ? C35 EV9 903 A 1 HETATM 27 C C36 EV9 . . . E 3 141.283 189.527 189.954 1 47.72 ? C36 EV9 903 A 1 HETATM 28 C C37 EV9 . . . E 3 141.419 188.299 190.859 1 47.72 ? C37 EV9 903 A 1 HETATM 29 C C42 EV9 . . . E 3 139.551 184.673 179.476 1 47.72 ? C42 EV9 903 A 1 HETATM 30 C C44 EV9 . . . E 3 140.31 184.984 178.177 1 47.72 ? C44 EV9 903 A 1 HETATM 31 C C45 EV9 . . . E 3 139.385 185.12 176.965 1 47.72 ? C45 EV9 903 A 1 HETATM 32 C C46 EV9 . . . E 3 139.14 183.788 176.256 1 47.72 ? C46 EV9 903 A 1 HETATM 33 C C47 EV9 . . . E 3 137.83 183.137 176.687 1 47.72 ? C47 EV9 903 A 1 HETATM 34 C C48 EV9 . . . E 3 137.24 182.213 175.63 1 47.72 ? C48 EV9 903 A 1 HETATM 35 C C49 EV9 . . . E 3 137.196 180.771 176.117 1 47.72 ? C49 EV9 903 A 1 HETATM 36 C C50 EV9 . . . E 3 136.746 179.799 175.036 1 47.72 ? C50 EV9 903 A 1 HETATM 37 C C51 EV9 . . . E 3 137.725 178.645 174.862 1 47.72 ? C51 EV9 903 A 1 HETATM 38 C C52 EV9 . . . E 3 137.022 177.296 174.857 1 47.72 ? C52 EV9 903 A 1 HETATM 39 C C53 EV9 . . . E 3 137.386 176.457 173.644 1 47.72 ? C53 EV9 903 A 1 HETATM 40 C C54 EV9 . . . E 3 136.432 175.288 173.464 1 47.72 ? C54 EV9 903 A 1 HETATM 41 C C55 EV9 . . . E 3 135.589 175.429 172.209 1 47.72 ? C55 EV9 903 A 1 HETATM 42 C C56 EV9 . . . E 3 134.264 174.689 172.322 1 47.72 ? C56 EV9 903 A 1 HETATM 43 C C57 EV9 . . . E 3 133.181 175.315 171.452 1 47.72 ? C57 EV9 903 A 1 HETATM 44 C C58 EV9 . . . E 3 131.811 174.7 171.711 1 47.72 ? C58 EV9 903 A 1 HETATM 45 N N38 EV9 . . . E 3 140.161 188.038 191.554 1 47.72 ? N38 EV9 903 A 1 HETATM 46 N N39 EV9 . . . E 3 144.269 192.194 187.144 1 47.72 ? N39 EV9 903 A 1 HETATM 47 O O17 EV9 . . . E 3 134.781 182.912 181.309 1 47.72 ? O17 EV9 903 A 1 HETATM 48 O O18 EV9 . . . E 3 136.11 184.384 180.243 1 47.72 ? O18 EV9 903 A 1 HETATM 49 O O22 EV9 . . . E 3 137.16 187.55 181.468 1 47.72 ? O22 EV9 903 A 1 HETATM 50 O O24 EV9 . . . E 3 137.662 190.078 181.381 1 47.72 ? O24 EV9 903 A 1 HETATM 51 O O25 EV9 . . . E 3 135.595 189.333 182.508 1 47.72 ? O25 EV9 903 A 1 HETATM 52 O O26 EV9 . . . E 3 137.869 188.924 183.672 1 47.72 ? O26 EV9 903 A 1 HETATM 53 O O30 EV9 . . . E 3 141.166 190.841 185.842 1 47.72 ? O30 EV9 903 A 1 HETATM 54 O O32 EV9 . . . E 3 143.04 191.457 184.777 1 47.72 ? O32 EV9 903 A 1 HETATM 55 O O40 EV9 . . . E 3 140.048 190.426 182.605 1 47.72 ? O40 EV9 903 A 1 HETATM 56 O O41 EV9 . . . E 3 138.352 185.344 179.78 1 47.72 ? O41 EV9 903 A 1 HETATM 57 O O43 EV9 . . . E 3 139.984 183.866 180.229 1 47.72 ? O43 EV9 903 A 1 HETATM 58 P P23 EV9 . . . E 3 137.046 189.008 182.245 1 47.72 ? P23 EV9 903 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 58 #