data_7DUW
#
_model_server_result.job_id            VwOoMnDZ5ZGdlCtMlf5LFQ 
_model_server_result.datetime_utc      '2025-02-01 18:50:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7duw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":904}' 
#
_entry.id    7DUW 
#
_exptl.entry_id    7DUW 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              851.142 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R})-3-[[(2~{S})-3-[(2~{S})-2,6-bis(azanyl)hexanoyl]oxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxy-2-hexadecanoyloxy-propyl] hexadecanoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DUW 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DUW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C44 H87 N2 O11 P' 
_chem_comp.formula_weight    851.142 
_chem_comp.id                EV9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R})-3-[[(2~{S})-3-[(2~{S})-2,6-bis(azanyl)hexanoyl]oxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxy-2-hexadecanoyloxy-propyl] hexadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O24 P23 EV9 doub 83 n n 
C19 O18 EV9 sing 84 n n 
C19 C20 EV9 sing 85 n n 
O18 C16 EV9 sing 86 n n 
P23 O22 EV9 sing 87 n n 
P23 O25 EV9 sing 88 n n 
P23 O26 EV9 sing 89 n n 
O43 C42 EV9 doub 90 n n 
O22 C21 EV9 sing 91 n n 
O41 C20 EV9 sing 92 n n 
O41 C42 EV9 sing 93 n n 
C15 C16 EV9 sing 94 n n 
C15 C14 EV9 sing 95 n n 
C21 C20 EV9 sing 96 n n 
C16 O17 EV9 doub 97 n n 
C42 C44 EV9 sing 98 n n 
O26 C27 EV9 sing 99 n n 
C13 C14 EV9 sing 100 n n 
C13 C12 EV9 sing 101 n n 
C12 C11 EV9 sing 102 n n 
C10 C11 EV9 sing 103 n n 
C10 C09 EV9 sing 104 n n 
C44 C45 EV9 sing 105 n n 
C27 C28 EV9 sing 106 n n 
C45 C46 EV9 sing 107 n n 
C09 C08 EV9 sing 108 n n 
O40 C28 EV9 sing 109 n n 
C28 C29 EV9 sing 110 n n 
C46 C47 EV9 sing 111 n n 
C08 C07 EV9 sing 112 n n 
C47 C48 EV9 sing 113 n n 
N38 C37 EV9 sing 114 n n 
C29 O30 EV9 sing 115 n n 
C07 C06 EV9 sing 116 n n 
O30 C31 EV9 sing 117 n n 
C37 C36 EV9 sing 118 n n 
C48 C49 EV9 sing 119 n n 
C49 C50 EV9 sing 120 n n 
C06 C05 EV9 sing 121 n n 
C36 C35 EV9 sing 122 n n 
C35 C34 EV9 sing 123 n n 
C31 O32 EV9 doub 124 n n 
C31 C33 EV9 sing 125 n n 
C05 C04 EV9 sing 126 n n 
C33 C34 EV9 sing 127 n n 
C33 N39 EV9 sing 128 n n 
C50 C51 EV9 sing 129 n n 
C51 C52 EV9 sing 130 n n 
C04 C03 EV9 sing 131 n n 
C53 C52 EV9 sing 132 n n 
C53 C54 EV9 sing 133 n n 
C03 C02 EV9 sing 134 n n 
C54 C55 EV9 sing 135 n n 
C02 C01 EV9 sing 136 n n 
C55 C56 EV9 sing 137 n n 
C56 C57 EV9 sing 138 n n 
C57 C58 EV9 sing 139 n n 
C10 H1 EV9 sing 140 n n 
C10 H2 EV9 sing 141 n n 
C13 H3 EV9 sing 142 n n 
C13 H4 EV9 sing 143 n n 
C15 H5 EV9 sing 144 n n 
C15 H6 EV9 sing 145 n n 
C20 H7 EV9 sing 146 n n 
C21 H8 EV9 sing 147 n n 
C21 H9 EV9 sing 148 n n 
C28 H10 EV9 sing 149 n n 
C01 H11 EV9 sing 150 n n 
C01 H12 EV9 sing 151 n n 
C01 H13 EV9 sing 152 n n 
C02 H14 EV9 sing 153 n n 
C02 H15 EV9 sing 154 n n 
C03 H16 EV9 sing 155 n n 
C03 H17 EV9 sing 156 n n 
C04 H18 EV9 sing 157 n n 
C04 H19 EV9 sing 158 n n 
C05 H20 EV9 sing 159 n n 
C05 H21 EV9 sing 160 n n 
C06 H22 EV9 sing 161 n n 
C06 H23 EV9 sing 162 n n 
C07 H24 EV9 sing 163 n n 
C07 H25 EV9 sing 164 n n 
C08 H26 EV9 sing 165 n n 
C08 H27 EV9 sing 166 n n 
C09 H28 EV9 sing 167 n n 
C09 H29 EV9 sing 168 n n 
C11 H30 EV9 sing 169 n n 
C11 H31 EV9 sing 170 n n 
C12 H32 EV9 sing 171 n n 
C12 H33 EV9 sing 172 n n 
C14 H34 EV9 sing 173 n n 
C14 H35 EV9 sing 174 n n 
C19 H36 EV9 sing 175 n n 
C19 H37 EV9 sing 176 n n 
C27 H38 EV9 sing 177 n n 
C27 H39 EV9 sing 178 n n 
C29 H40 EV9 sing 179 n n 
C29 H41 EV9 sing 180 n n 
C33 H42 EV9 sing 181 n n 
C34 H43 EV9 sing 182 n n 
C34 H44 EV9 sing 183 n n 
C35 H45 EV9 sing 184 n n 
C35 H46 EV9 sing 185 n n 
C36 H47 EV9 sing 186 n n 
C36 H48 EV9 sing 187 n n 
C37 H49 EV9 sing 188 n n 
C37 H50 EV9 sing 189 n n 
C44 H51 EV9 sing 190 n n 
C44 H52 EV9 sing 191 n n 
C45 H53 EV9 sing 192 n n 
C45 H54 EV9 sing 193 n n 
C46 H55 EV9 sing 194 n n 
C46 H56 EV9 sing 195 n n 
C47 H57 EV9 sing 196 n n 
C47 H58 EV9 sing 197 n n 
C48 H59 EV9 sing 198 n n 
C48 H60 EV9 sing 199 n n 
C49 H61 EV9 sing 200 n n 
C49 H62 EV9 sing 201 n n 
C50 H63 EV9 sing 202 n n 
C50 H64 EV9 sing 203 n n 
C51 H65 EV9 sing 204 n n 
C51 H66 EV9 sing 205 n n 
C52 H67 EV9 sing 206 n n 
C52 H68 EV9 sing 207 n n 
C53 H69 EV9 sing 208 n n 
C53 H70 EV9 sing 209 n n 
C54 H71 EV9 sing 210 n n 
C54 H72 EV9 sing 211 n n 
C55 H73 EV9 sing 212 n n 
C55 H74 EV9 sing 213 n n 
C56 H75 EV9 sing 214 n n 
C56 H76 EV9 sing 215 n n 
C57 H77 EV9 sing 216 n n 
C57 H78 EV9 sing 217 n n 
C58 H79 EV9 sing 218 n n 
C58 H80 EV9 sing 219 n n 
C58 H81 EV9 sing 220 n n 
N38 H82 EV9 sing 221 n n 
N38 H83 EV9 sing 222 n n 
N39 H85 EV9 sing 223 n n 
N39 H86 EV9 sing 224 n n 
O25 H88 EV9 sing 225 n n 
O40 H89 EV9 sing 226 n n 
#
_atom_sites.entry_id                     7DUW 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LMT A 1 901 901 LMT LMT . 
D 3 EV9 A 1 902 902 EV9 EV9 . 
E 3 EV9 A 1 903 905 EV9 EV9 . 
F 4 LHG A 1 904 1006 LHG LHG . 
G 5 PGT A 1 905 1008 PGT PGT . 
H 6 J4U A 1 906 1000 J4U UNL . 
I 6 J4U B 1 901 1000 J4U UNL . 
J 2 LMT B 1 902 901 LMT LMT . 
K 3 EV9 B 1 903 902 EV9 EV9 . 
L 3 EV9 B 1 904 905 EV9 EV9 . 
M 4 LHG B 1 905 1006 LHG LHG . 
N 5 PGT B 1 906 1008 PGT PGT . 
O 7 HOH A 1 1001 998 HOH HOH . 
P 7 HOH B 1 1001 998 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 EV9 . . . L 3 181.62 143.84 179.571 1 47.84 ? C10 EV9 904 B 1 
HETATM 2 C C13 EV9 . . . L 3 183.643 140.642 179.654 1 47.84 ? C13 EV9 904 B 1 
HETATM 3 C C15 EV9 . . . L 3 183.798 138.106 179.706 1 47.84 ? C15 EV9 904 B 1 
HETATM 4 C C20 EV9 . . . L 3 181.907 134.615 181.149 1 47.84 ? C20 EV9 904 B 1 
HETATM 5 C C21 EV9 . . . L 3 181.652 133.206 181.678 1 47.84 ? C21 EV9 904 B 1 
HETATM 6 C C28 EV9 . . . L 3 180.137 129.789 183.971 1 47.84 ? C28 EV9 904 B 1 
HETATM 7 C C01 EV9 . . . L 3 187.573 149.648 180.682 0 47.84 ? C01 EV9 904 B 1 
HETATM 8 C C02 EV9 . . . L 3 187.605 148.127 180.587 0 47.84 ? C02 EV9 904 B 1 
HETATM 9 C C03 EV9 . . . L 3 187.298 147.454 181.92 1 47.84 ? C03 EV9 904 B 1 
HETATM 10 C C04 EV9 . . . L 3 185.953 146.736 181.892 1 47.84 ? C04 EV9 904 B 1 
HETATM 11 C C05 EV9 . . . L 3 184.784 147.712 181.842 1 47.84 ? C05 EV9 904 B 1 
HETATM 12 C C06 EV9 . . . L 3 183.602 147.143 181.068 1 47.84 ? C06 EV9 904 B 1 
HETATM 13 C C07 EV9 . . . L 3 182.467 146.717 181.987 1 47.84 ? C07 EV9 904 B 1 
HETATM 14 C C08 EV9 . . . L 3 181.858 145.394 181.545 1 47.84 ? C08 EV9 904 B 1 
HETATM 15 C C09 EV9 . . . L 3 181.725 145.285 180.033 1 47.84 ? C09 EV9 904 B 1 
HETATM 16 C C11 EV9 . . . L 3 182.779 142.992 180.091 1 47.84 ? C11 EV9 904 B 1 
HETATM 17 C C12 EV9 . . . L 3 182.449 141.502 180.078 1 47.84 ? C12 EV9 904 B 1 
HETATM 18 C C14 EV9 . . . L 3 183.786 139.396 180.533 1 47.84 ? C14 EV9 904 B 1 
HETATM 19 C C16 EV9 . . . L 3 184.361 136.914 180.496 1 47.84 ? C16 EV9 904 B 1 
HETATM 20 C C19 EV9 . . . L 3 183.372 134.981 181.4 1 47.84 ? C19 EV9 904 B 1 
HETATM 21 C C27 EV9 . . . L 3 181.638 129.876 184.238 1 47.84 ? C27 EV9 904 B 1 
HETATM 22 C C29 EV9 . . . L 3 179.542 128.63 184.766 1 47.84 ? C29 EV9 904 B 1 
HETATM 23 C C31 EV9 . . . L 3 177.44 128.862 185.799 1 47.84 ? C31 EV9 904 B 1 
HETATM 24 C C33 EV9 . . . L 3 176.599 128.949 187.074 1 47.84 ? C33 EV9 904 B 1 
HETATM 25 C C34 EV9 . . . L 3 177.523 128.953 188.287 1 47.84 ? C34 EV9 904 B 1 
HETATM 26 C C35 EV9 . . . L 3 177.462 130.268 189.061 1 47.84 ? C35 EV9 904 B 1 
HETATM 27 C C36 EV9 . . . L 3 178.694 130.47 189.957 1 47.84 ? C36 EV9 904 B 1 
HETATM 28 C C37 EV9 . . . L 3 178.559 131.698 190.862 1 47.84 ? C37 EV9 904 B 1 
HETATM 29 C C42 EV9 . . . L 3 180.429 135.325 179.48 1 47.84 ? C42 EV9 904 B 1 
HETATM 30 C C44 EV9 . . . L 3 179.67 135.015 178.181 1 47.84 ? C44 EV9 904 B 1 
HETATM 31 C C45 EV9 . . . L 3 180.595 134.879 176.969 1 47.84 ? C45 EV9 904 B 1 
HETATM 32 C C46 EV9 . . . L 3 180.84 136.21 176.26 1 47.84 ? C46 EV9 904 B 1 
HETATM 33 C C47 EV9 . . . L 3 182.15 136.861 176.691 1 47.84 ? C47 EV9 904 B 1 
HETATM 34 C C48 EV9 . . . L 3 182.74 137.786 175.634 1 47.84 ? C48 EV9 904 B 1 
HETATM 35 C C49 EV9 . . . L 3 182.785 139.227 176.122 1 47.84 ? C49 EV9 904 B 1 
HETATM 36 C C50 EV9 . . . L 3 183.235 140.2 175.041 1 47.84 ? C50 EV9 904 B 1 
HETATM 37 C C51 EV9 . . . L 3 182.257 141.354 174.867 1 47.84 ? C51 EV9 904 B 1 
HETATM 38 C C52 EV9 . . . L 3 182.96 142.702 174.863 1 47.84 ? C52 EV9 904 B 1 
HETATM 39 C C53 EV9 . . . L 3 182.596 143.541 173.649 1 47.84 ? C53 EV9 904 B 1 
HETATM 40 C C54 EV9 . . . L 3 183.551 144.71 173.47 1 47.84 ? C54 EV9 904 B 1 
HETATM 41 C C55 EV9 . . . L 3 184.394 144.569 172.215 1 47.84 ? C55 EV9 904 B 1 
HETATM 42 C C56 EV9 . . . L 3 185.719 145.309 172.328 1 47.84 ? C56 EV9 904 B 1 
HETATM 43 C C57 EV9 . . . L 3 186.802 144.683 171.458 1 47.84 ? C57 EV9 904 B 1 
HETATM 44 C C58 EV9 . . . L 3 188.172 145.298 171.717 1 47.84 ? C58 EV9 904 B 1 
HETATM 45 N N38 EV9 . . . L 3 179.816 131.958 191.557 1 47.84 ? N38 EV9 904 B 1 
HETATM 46 N N39 EV9 . . . L 3 175.708 127.804 187.146 1 47.84 ? N39 EV9 904 B 1 
HETATM 47 O O17 EV9 . . . L 3 185.199 137.084 181.314 1 47.84 ? O17 EV9 904 B 1 
HETATM 48 O O18 EV9 . . . L 3 183.869 135.613 180.247 1 47.84 ? O18 EV9 904 B 1 
HETATM 49 O O22 EV9 . . . L 3 182.819 132.447 181.471 1 47.84 ? O22 EV9 904 B 1 
HETATM 50 O O24 EV9 . . . L 3 182.316 129.919 181.384 1 47.84 ? O24 EV9 904 B 1 
HETATM 51 O O25 EV9 . . . L 3 184.383 130.663 182.511 1 47.84 ? O25 EV9 904 B 1 
HETATM 52 O O26 EV9 . . . L 3 182.109 131.072 183.675 1 47.84 ? O26 EV9 904 B 1 
HETATM 53 O O30 EV9 . . . L 3 178.811 129.157 185.844 1 47.84 ? O30 EV9 904 B 1 
HETATM 54 O O32 EV9 . . . L 3 176.937 128.541 184.779 1 47.84 ? O32 EV9 904 B 1 
HETATM 55 O O40 EV9 . . . L 3 179.93 129.572 182.608 1 47.84 ? O40 EV9 904 B 1 
HETATM 56 O O41 EV9 . . . L 3 181.627 134.654 179.783 1 47.84 ? O41 EV9 904 B 1 
HETATM 57 O O43 EV9 . . . L 3 179.996 136.132 180.233 1 47.84 ? O43 EV9 904 B 1 
HETATM 58 P P23 EV9 . . . L 3 182.932 130.989 182.248 1 47.84 ? P23 EV9 904 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           58 
#