data_7DUW
#
_model_server_result.job_id            lG5Ln79xLLFnjnmoPbmHtQ 
_model_server_result.datetime_utc      '2024-11-21 15:17:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7duw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":906}' 
#
_entry.id    7DUW 
#
_exptl.entry_id    7DUW 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              751.023 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DUW 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DUW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 N N N 
#
_chem_comp.formula           'C40 H79 O10 P' 
_chem_comp.formula_weight    751.023 
_chem_comp.id                PGT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C47 PGT sing 768 n n 
C48 H481 PGT sing 769 n n 
C48 H482 PGT sing 770 n n 
C48 H483 PGT sing 771 n n 
C47 C46 PGT sing 772 n n 
C47 H471 PGT sing 773 n n 
C47 H472 PGT sing 774 n n 
C46 C45 PGT sing 775 n n 
C46 H461 PGT sing 776 n n 
C46 H462 PGT sing 777 n n 
C45 C44 PGT sing 778 n n 
C45 H451 PGT sing 779 n n 
C45 H452 PGT sing 780 n n 
C44 C43 PGT sing 781 n n 
C44 H441 PGT sing 782 n n 
C44 H442 PGT sing 783 n n 
C43 C42 PGT sing 784 n n 
C43 H431 PGT sing 785 n n 
C43 H432 PGT sing 786 n n 
C42 C41 PGT sing 787 n n 
C42 H421 PGT sing 788 n n 
C42 H422 PGT sing 789 n n 
C41 C40 PGT sing 790 n n 
C41 H411 PGT sing 791 n n 
C41 H412 PGT sing 792 n n 
C40 C39 PGT sing 793 n n 
C40 H401 PGT sing 794 n n 
C40 H402 PGT sing 795 n n 
C39 C38 PGT sing 796 n n 
C39 H391 PGT sing 797 n n 
C39 H392 PGT sing 798 n n 
C38 C37 PGT sing 799 n n 
C38 H381 PGT sing 800 n n 
C38 H382 PGT sing 801 n n 
C37 C36 PGT sing 802 n n 
C37 H371 PGT sing 803 n n 
C37 H372 PGT sing 804 n n 
C36 C35 PGT sing 805 n n 
C36 H361 PGT sing 806 n n 
C36 H362 PGT sing 807 n n 
C35 C34 PGT sing 808 n n 
C35 H351 PGT sing 809 n n 
C35 H352 PGT sing 810 n n 
C34 C33 PGT sing 811 n n 
C34 H341 PGT sing 812 n n 
C34 H342 PGT sing 813 n n 
C33 C32 PGT sing 814 n n 
C33 H331 PGT sing 815 n n 
C33 H332 PGT sing 816 n n 
C32 C31 PGT sing 817 n n 
C32 H321 PGT sing 818 n n 
C32 H322 PGT sing 819 n n 
C31 O31 PGT doub 820 n n 
C31 O2 PGT sing 821 n n 
O2 C2 PGT sing 822 n n 
C2 C1 PGT sing 823 n n 
C2 C3 PGT sing 824 n n 
C2 H2 PGT sing 825 n n 
C1 O3P PGT sing 826 n n 
C1 H11 PGT sing 827 n n 
C1 H12 PGT sing 828 n n 
O3P P PGT sing 829 n n 
P O1P PGT doub 830 n n 
P O2P PGT sing 831 n n 
P O4P PGT sing 832 n n 
O2P HO2P PGT sing 833 n n 
O4P C4 PGT sing 834 n n 
C4 C5 PGT sing 835 n n 
C4 H41 PGT sing 836 n n 
C4 H42 PGT sing 837 n n 
C5 O5 PGT sing 838 n n 
C5 C6 PGT sing 839 n n 
C5 H5 PGT sing 840 n n 
O5 HO5 PGT sing 841 n n 
C6 O6 PGT sing 842 n n 
C6 H61 PGT sing 843 n n 
C6 H62 PGT sing 844 n n 
O6 HO6 PGT sing 845 n n 
C3 O3 PGT sing 846 n n 
C3 H31 PGT sing 847 n n 
C3 H32 PGT sing 848 n n 
O3 C11 PGT sing 849 n n 
C11 O11 PGT doub 850 n n 
C11 C12 PGT sing 851 n n 
C12 C13 PGT sing 852 n n 
C12 H121 PGT sing 853 n n 
C12 H122 PGT sing 854 n n 
C13 C14 PGT sing 855 n n 
C13 H131 PGT sing 856 n n 
C13 H132 PGT sing 857 n n 
C14 C15 PGT sing 858 n n 
C14 H141 PGT sing 859 n n 
C14 H142 PGT sing 860 n n 
C15 C16 PGT sing 861 n n 
C15 H151 PGT sing 862 n n 
C15 H152 PGT sing 863 n n 
C16 C17 PGT sing 864 n n 
C16 H161 PGT sing 865 n n 
C16 H162 PGT sing 866 n n 
C17 C18 PGT sing 867 n n 
C17 H171 PGT sing 868 n n 
C17 H172 PGT sing 869 n n 
C18 C19 PGT sing 870 n n 
C18 H181 PGT sing 871 n n 
C18 H182 PGT sing 872 n n 
C19 C20 PGT sing 873 n n 
C19 H191 PGT sing 874 n n 
C19 H192 PGT sing 875 n n 
C20 C21 PGT sing 876 n n 
C20 H201 PGT sing 877 n n 
C20 H202 PGT sing 878 n n 
C21 C22 PGT sing 879 n n 
C21 H211 PGT sing 880 n n 
C21 H212 PGT sing 881 n n 
C22 C23 PGT sing 882 n n 
C22 H221 PGT sing 883 n n 
C22 H222 PGT sing 884 n n 
C23 C24 PGT sing 885 n n 
C23 H231 PGT sing 886 n n 
C23 H232 PGT sing 887 n n 
C24 C25 PGT sing 888 n n 
C24 H241 PGT sing 889 n n 
C24 H242 PGT sing 890 n n 
C25 C26 PGT sing 891 n n 
C25 H251 PGT sing 892 n n 
C25 H252 PGT sing 893 n n 
C26 H261 PGT sing 894 n n 
C26 H262 PGT sing 895 n n 
C26 H263 PGT sing 896 n n 
#
_atom_sites.entry_id                     7DUW 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LMT A 1 901 901 LMT LMT . 
D 3 EV9 A 1 902 902 EV9 EV9 . 
E 3 EV9 A 1 903 905 EV9 EV9 . 
F 4 LHG A 1 904 1006 LHG LHG . 
G 5 PGT A 1 905 1008 PGT PGT . 
H 6 J4U A 1 906 1000 J4U UNL . 
I 6 J4U B 1 901 1000 J4U UNL . 
J 2 LMT B 1 902 901 LMT LMT . 
K 3 EV9 B 1 903 902 EV9 EV9 . 
L 3 EV9 B 1 904 905 EV9 EV9 . 
M 4 LHG B 1 905 1006 LHG LHG . 
N 5 PGT B 1 906 1008 PGT PGT . 
O 7 HOH A 1 1001 998 HOH HOH . 
P 7 HOH B 1 1001 998 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C48 PGT . . . N 5 170.715 160.998 155.939 1 33.56 ? C48 PGT 906 B 1 
HETATM 2 C C47 PGT . . . N 5 169.873 160.938 157.193 1 33.56 ? C47 PGT 906 B 1 
HETATM 3 C C46 PGT . . . N 5 169.844 162.287 157.9 1 33.56 ? C46 PGT 906 B 1 
HETATM 4 C C45 PGT . . . N 5 168.853 162.277 159.057 1 33.56 ? C45 PGT 906 B 1 
HETATM 5 C C44 PGT . . . N 5 168.705 163.667 159.66 1 33.56 ? C44 PGT 906 B 1 
HETATM 6 C C43 PGT . . . N 5 167.603 163.696 160.71 1 33.56 ? C43 PGT 906 B 1 
HETATM 7 C C42 PGT . . . N 5 167.446 165.088 161.307 1 33.56 ? C42 PGT 906 B 1 
HETATM 8 C C41 PGT . . . N 5 166.118 165.215 162.044 1 33.56 ? C41 PGT 906 B 1 
HETATM 9 C C40 PGT . . . N 5 166.131 166.389 163.015 1 33.56 ? C40 PGT 906 B 1 
HETATM 10 C C39 PGT . . . N 5 166.352 167.717 162.301 1 33.56 ? C39 PGT 906 B 1 
HETATM 11 C C38 PGT . . . N 5 165.155 168.092 161.436 1 33.56 ? C38 PGT 906 B 1 
HETATM 12 C C37 PGT . . . N 5 165.095 169.6 161.225 1 33.56 ? C37 PGT 906 B 1 
HETATM 13 C C36 PGT . . . N 5 163.909 170.003 160.357 1 33.56 ? C36 PGT 906 B 1 
HETATM 14 C C35 PGT . . . N 5 163.6 171.485 160.52 1 33.56 ? C35 PGT 906 B 1 
HETATM 15 C C34 PGT . . . N 5 162.881 172.038 159.296 1 33.56 ? C34 PGT 906 B 1 
HETATM 16 C C33 PGT . . . N 5 163.871 172.655 158.314 1 33.56 ? C33 PGT 906 B 1 
HETATM 17 C C32 PGT . . . N 5 163.175 173.109 157.036 1 33.56 ? C32 PGT 906 B 1 
HETATM 18 C C31 PGT . . . N 5 163.005 171.925 156.115 1 33.56 ? C31 PGT 906 B 1 
HETATM 19 O O31 PGT . . . N 5 163.631 170.896 156.307 1 33.56 ? O31 PGT 906 B 1 
HETATM 20 O O2 PGT . . . N 5 162.091 171.991 154.986 1 33.56 ? O2 PGT 906 B 1 
HETATM 21 C C2 PGT . . . N 5 161.997 170.72 154.347 1 33.56 ? C2 PGT 906 B 1 
HETATM 22 C C1 PGT . . . N 5 162.112 170.851 152.834 1 33.56 ? C1 PGT 906 B 1 
HETATM 23 O O3P PGT . . . N 5 162.003 169.541 152.284 1 33.56 ? O3P PGT 906 B 1 
HETATM 24 P P PGT . . . N 5 162.423 169.233 150.764 1 33.56 ? P PGT 906 B 1 
HETATM 25 O O1P PGT . . . N 5 161.721 170.221 149.865 1 33.56 ? O1P PGT 906 B 1 
HETATM 26 O O2P PGT . . . N 5 163.924 169.089 150.714 1 33.56 ? O2P PGT 906 B 1 
HETATM 27 O O4P PGT . . . N 5 161.769 167.784 150.516 1 33.56 ? O4P PGT 906 B 1 
HETATM 28 C C4 PGT . . . N 5 161.833 167.173 149.231 1 33.56 ? C4 PGT 906 B 1 
HETATM 29 C C5 PGT . . . N 5 160.913 165.959 149.193 1 33.56 ? C5 PGT 906 B 1 
HETATM 30 O O5 PGT . . . N 5 161.318 165.012 150.185 1 33.56 ? O5 PGT 906 B 1 
HETATM 31 C C6 PGT . . . N 5 160.988 165.314 147.814 1 33.56 ? C6 PGT 906 B 1 
HETATM 32 O O6 PGT . . . N 5 160.034 164.249 147.724 1 33.56 ? O6 PGT 906 B 1 
HETATM 33 C C3 PGT . . . N 5 160.665 170.072 154.703 1 33.56 ? C3 PGT 906 B 1 
HETATM 34 O O3 PGT . . . N 5 160.642 169.943 156.12 1 33.56 ? O3 PGT 906 B 1 
HETATM 35 C C11 PGT . . . N 5 159.91 168.875 156.776 1 33.56 ? C11 PGT 906 B 1 
HETATM 36 O O11 PGT . . . N 5 159.017 168.297 156.184 1 33.56 ? O11 PGT 906 B 1 
HETATM 37 C C12 PGT . . . N 5 160.293 168.496 158.183 1 33.56 ? C12 PGT 906 B 1 
HETATM 38 C C13 PGT . . . N 5 159.521 167.266 158.635 1 33.56 ? C13 PGT 906 B 1 
HETATM 39 C C14 PGT . . . N 5 159.91 166.919 160.064 1 33.56 ? C14 PGT 906 B 1 
HETATM 40 C C15 PGT . . . N 5 159.588 168.06 161.023 1 33.56 ? C15 PGT 906 B 1 
HETATM 41 C C16 PGT . . . N 5 160.521 168.024 162.226 1 33.56 ? C16 PGT 906 B 1 
HETATM 42 C C17 PGT . . . N 5 160.399 166.704 162.977 1 33.56 ? C17 PGT 906 B 1 
HETATM 43 C C18 PGT . . . N 5 161.559 166.509 163.946 1 33.56 ? C18 PGT 906 B 1 
HETATM 44 C C19 PGT . . . N 5 161.37 165.242 164.771 1 33.56 ? C19 PGT 906 B 1 
HETATM 45 C C20 PGT . . . N 5 160.206 165.395 165.741 1 33.56 ? C20 PGT 906 B 1 
HETATM 46 C C21 PGT . . . N 5 159.97 164.113 166.53 1 33.56 ? C21 PGT 906 B 1 
HETATM 47 C C22 PGT . . . N 5 159.013 164.367 167.687 1 33.56 ? C22 PGT 906 B 1 
HETATM 48 C C23 PGT . . . N 5 158.638 163.07 168.395 1 33.56 ? C23 PGT 906 B 1 
HETATM 49 C C24 PGT . . . N 5 157.98 163.356 169.74 1 33.56 ? C24 PGT 906 B 1 
HETATM 50 C C25 PGT . . . N 5 157.121 162.184 170.202 1 33.56 ? C25 PGT 906 B 1 
HETATM 51 C C26 PGT . . . N 5 157.928 160.911 170.322 1 33.56 ? C26 PGT 906 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           51 
#