data_7DUX # _model_server_result.job_id 0wh93zdM5lLd0jzNHGmGtA _model_server_result.datetime_utc '2025-01-11 04:57:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dux # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7DUX # _exptl.entry_id 7DUX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.177 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-but-3-enylimidazole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DUX _cell.length_a 46.134 _cell.length_b 64.865 _cell.length_c 91.476 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DUX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 83 A HIS 114 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 A ND1 HIS 85 A HIS 116 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc3 A OD2 ASP 87 A ASP 118 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc4 A NE2 HIS 148 A HIS 179 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc5 A SG CYS 167 A CYS 198 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc6 A NE2 HIS 209 A HIS 240 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 F O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc8 C ZN ZN . A ZN 302 1_555 D O07 HLF . A HLF 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc9 C ZN ZN . A ZN 302 1_555 D N05 HLF . A HLF 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc10 C ZN ZN . A ZN 302 1_555 F O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'C8 H10 N2 O2' _chem_comp.formula_weight 166.177 _chem_comp.id HLF _chem_comp.mon_nstd_flag . _chem_comp.name '1-but-3-enylimidazole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 HLF sing 163 n n C10 C09 HLF sing 164 n n C11 C12 HLF doub 165 n n C09 N03 HLF sing 166 n n N03 C02 HLF sing 167 n y N03 C04 HLF sing 168 n y C02 C01 HLF doub 169 n y O08 C06 HLF doub 170 n n C04 C06 HLF sing 171 n n C04 N05 HLF doub 172 n y C06 O07 HLF sing 173 n n C01 N05 HLF sing 174 n y C01 H1 HLF sing 175 n n C02 H2 HLF sing 176 n n O07 H3 HLF sing 177 n n C09 H4 HLF sing 178 n n C09 H5 HLF sing 179 n n C10 H6 HLF sing 180 n n C10 H7 HLF sing 181 n n C11 H8 HLF sing 182 n n C12 H9 HLF sing 183 n n C12 H10 HLF sing 184 n n # _atom_sites.entry_id 7DUX _atom_sites.fract_transf_matrix[1][1] 0.021676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010932 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 HLF A 1 303 401 HLF 141 . E 4 GOL A 1 304 501 GOL GOL . F 5 HOH A 1 401 109 HOH HOH . F 5 HOH A 2 402 66 HOH HOH . F 5 HOH A 3 403 86 HOH HOH . F 5 HOH A 4 404 98 HOH HOH . F 5 HOH A 5 405 12 HOH HOH . F 5 HOH A 6 406 17 HOH HOH . F 5 HOH A 7 407 22 HOH HOH . F 5 HOH A 8 408 83 HOH HOH . F 5 HOH A 9 409 137 HOH HOH . F 5 HOH A 10 410 23 HOH HOH . F 5 HOH A 11 411 103 HOH HOH . F 5 HOH A 12 412 142 HOH HOH . F 5 HOH A 13 413 84 HOH HOH . F 5 HOH A 14 414 123 HOH HOH . F 5 HOH A 15 415 72 HOH HOH . F 5 HOH A 16 416 18 HOH HOH . F 5 HOH A 17 417 87 HOH HOH . F 5 HOH A 18 418 1 HOH HOH . F 5 HOH A 19 419 4 HOH HOH . F 5 HOH A 20 420 116 HOH HOH . F 5 HOH A 21 421 111 HOH HOH . F 5 HOH A 22 422 26 HOH HOH . F 5 HOH A 23 423 73 HOH HOH . F 5 HOH A 24 424 126 HOH HOH . F 5 HOH A 25 425 41 HOH HOH . F 5 HOH A 26 426 81 HOH HOH . F 5 HOH A 27 427 11 HOH HOH . F 5 HOH A 28 428 60 HOH HOH . F 5 HOH A 29 429 9 HOH HOH . F 5 HOH A 30 430 3 HOH HOH . F 5 HOH A 31 431 59 HOH HOH . F 5 HOH A 32 432 47 HOH HOH . F 5 HOH A 33 433 43 HOH HOH . F 5 HOH A 34 434 48 HOH HOH . F 5 HOH A 35 435 112 HOH HOH . F 5 HOH A 36 436 53 HOH HOH . F 5 HOH A 37 437 21 HOH HOH . F 5 HOH A 38 438 7 HOH HOH . F 5 HOH A 39 439 82 HOH HOH . F 5 HOH A 40 440 50 HOH HOH . F 5 HOH A 41 441 45 HOH HOH . F 5 HOH A 42 442 94 HOH HOH . F 5 HOH A 43 443 14 HOH HOH . F 5 HOH A 44 444 125 HOH HOH . F 5 HOH A 45 445 38 HOH HOH . F 5 HOH A 46 446 152 HOH HOH . F 5 HOH A 47 447 54 HOH HOH . F 5 HOH A 48 448 127 HOH HOH . F 5 HOH A 49 449 44 HOH HOH . F 5 HOH A 50 450 6 HOH HOH . F 5 HOH A 51 451 162 HOH HOH . F 5 HOH A 52 452 76 HOH HOH . F 5 HOH A 53 453 75 HOH HOH . F 5 HOH A 54 454 100 HOH HOH . F 5 HOH A 55 455 70 HOH HOH . F 5 HOH A 56 456 36 HOH HOH . F 5 HOH A 57 457 2 HOH HOH . F 5 HOH A 58 458 144 HOH HOH . F 5 HOH A 59 459 138 HOH HOH . F 5 HOH A 60 460 133 HOH HOH . F 5 HOH A 61 461 13 HOH HOH . F 5 HOH A 62 462 5 HOH HOH . F 5 HOH A 63 463 28 HOH HOH . F 5 HOH A 64 464 153 HOH HOH . F 5 HOH A 65 465 97 HOH HOH . F 5 HOH A 66 466 8 HOH HOH . F 5 HOH A 67 467 32 HOH HOH . F 5 HOH A 68 468 29 HOH HOH . F 5 HOH A 69 469 140 HOH HOH . F 5 HOH A 70 470 147 HOH HOH . F 5 HOH A 71 471 27 HOH HOH . F 5 HOH A 72 472 77 HOH HOH . F 5 HOH A 73 473 24 HOH HOH . F 5 HOH A 74 474 58 HOH HOH . F 5 HOH A 75 475 46 HOH HOH . F 5 HOH A 76 476 33 HOH HOH . F 5 HOH A 77 477 102 HOH HOH . F 5 HOH A 78 478 159 HOH HOH . F 5 HOH A 79 479 74 HOH HOH . F 5 HOH A 80 480 35 HOH HOH . F 5 HOH A 81 481 99 HOH HOH . F 5 HOH A 82 482 106 HOH HOH . F 5 HOH A 83 483 108 HOH HOH . F 5 HOH A 84 484 131 HOH HOH . F 5 HOH A 85 485 15 HOH HOH . F 5 HOH A 86 486 156 HOH HOH . F 5 HOH A 87 487 31 HOH HOH . F 5 HOH A 88 488 25 HOH HOH . F 5 HOH A 89 489 62 HOH HOH . F 5 HOH A 90 490 34 HOH HOH . F 5 HOH A 91 491 63 HOH HOH . F 5 HOH A 92 492 42 HOH HOH . F 5 HOH A 93 493 132 HOH HOH . F 5 HOH A 94 494 49 HOH HOH . F 5 HOH A 95 495 68 HOH HOH . F 5 HOH A 96 496 101 HOH HOH . F 5 HOH A 97 497 37 HOH HOH . F 5 HOH A 98 498 65 HOH HOH . F 5 HOH A 99 499 10 HOH HOH . F 5 HOH A 100 500 20 HOH HOH . F 5 HOH A 101 501 88 HOH HOH . F 5 HOH A 102 502 122 HOH HOH . F 5 HOH A 103 503 154 HOH HOH . F 5 HOH A 104 504 92 HOH HOH . F 5 HOH A 105 505 91 HOH HOH . F 5 HOH A 106 506 85 HOH HOH . F 5 HOH A 107 507 52 HOH HOH . F 5 HOH A 108 508 51 HOH HOH . F 5 HOH A 109 509 113 HOH HOH . F 5 HOH A 110 510 160 HOH HOH . F 5 HOH A 111 511 155 HOH HOH . F 5 HOH A 112 512 145 HOH HOH . F 5 HOH A 113 513 161 HOH HOH . F 5 HOH A 114 514 30 HOH HOH . F 5 HOH A 115 515 57 HOH HOH . F 5 HOH A 116 516 67 HOH HOH . F 5 HOH A 117 517 114 HOH HOH . F 5 HOH A 118 518 157 HOH HOH . F 5 HOH A 119 519 79 HOH HOH . F 5 HOH A 120 520 104 HOH HOH . F 5 HOH A 121 521 40 HOH HOH . F 5 HOH A 122 522 69 HOH HOH . F 5 HOH A 123 523 110 HOH HOH . F 5 HOH A 124 524 95 HOH HOH . F 5 HOH A 125 525 117 HOH HOH . F 5 HOH A 126 526 107 HOH HOH . F 5 HOH A 127 527 56 HOH HOH . F 5 HOH A 128 528 124 HOH HOH . F 5 HOH A 129 529 80 HOH HOH . F 5 HOH A 130 530 121 HOH HOH . F 5 HOH A 131 531 61 HOH HOH . F 5 HOH A 132 532 128 HOH HOH . F 5 HOH A 133 533 130 HOH HOH . F 5 HOH A 134 534 164 HOH HOH . F 5 HOH A 135 535 89 HOH HOH . F 5 HOH A 136 536 119 HOH HOH . F 5 HOH A 137 537 148 HOH HOH . F 5 HOH A 138 538 118 HOH HOH . F 5 HOH A 139 539 141 HOH HOH . F 5 HOH A 140 540 163 HOH HOH . F 5 HOH A 141 541 149 HOH HOH . F 5 HOH A 142 542 143 HOH HOH . F 5 HOH A 143 543 136 HOH HOH . F 5 HOH A 144 544 150 HOH HOH . F 5 HOH A 145 545 71 HOH HOH . F 5 HOH A 146 546 19 HOH HOH . F 5 HOH A 147 547 78 HOH HOH . F 5 HOH A 148 548 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 HLF . . . D 3 21.875 13.57 9.912 1 28.85 ? C01 HLF 303 A 1 HETATM 2 C C02 HLF . . . D 3 22.333 12.95 8.754 1 31.02 ? C02 HLF 303 A 1 HETATM 3 N N03 HLF . . . D 3 21.55 11.909 8.522 1 29.7 ? N03 HLF 303 A 1 HETATM 4 C C04 HLF . . . D 3 20.628 11.872 9.474 1 26.75 ? C04 HLF 303 A 1 HETATM 5 N N05 HLF . . . D 3 20.827 12.876 10.317 1 29.51 ? N05 HLF 303 A 1 HETATM 6 C C06 HLF . . . D 3 19.518 10.835 9.593 1 26.8 ? C06 HLF 303 A 1 HETATM 7 O O07 HLF . . . D 3 18.598 11.006 10.444 1 25.23 ? O07 HLF 303 A 1 HETATM 8 O O08 HLF . . . D 3 19.515 9.814 8.833 1 28.71 -1 O08 HLF 303 A 1 HETATM 9 C C09 HLF . . . D 3 21.666 10.984 7.399 1 27.72 ? C09 HLF 303 A 1 HETATM 10 C C10 HLF . . . D 3 21.092 11.66 6.151 1 24.79 ? C10 HLF 303 A 1 HETATM 11 C C11 HLF . . . D 3 19.579 11.805 6.228 1 27.08 ? C11 HLF 303 A 1 HETATM 12 C C12 HLF . . . D 3 19.041 13.002 6.38 1 29.16 ? C12 HLF 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 12 #