data_7DV4
#
_model_server_result.job_id            7HNxJuMerHssV_okRkkNSw 
_model_server_result.datetime_utc      '2025-02-27 01:33:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dv4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":201}' 
#
_entry.id    7DV4 
#
_exptl.entry_id    7DV4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DV4 
_cell.length_a            75.591 
_cell.length_b            110.336 
_cell.length_c            134.185 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DV4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,K,L,Q,R 1 1 
C,D,E,F,J,M,N,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 50 A CYS 50 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf4 C SG CYS 23 C CYS 23 1_555 C SG CYS 94 C CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
disulf ? disulf5 C SG CYS 50 C CYS 50 1_555 C SG CYS 68 C CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf6 D SG CYS 23 D CYS 23 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
disulf ? disulf7 E SG CYS 23 E CYS 23 1_555 E SG CYS 94 E CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf8 E SG CYS 50 E CYS 50 1_555 E SG CYS 68 E CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf9 F SG CYS 23 F CYS 23 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
disulf ? disulf10 G SG CYS 23 G CYS 23 1_555 G SG CYS 94 G CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf11 G SG CYS 50 G CYS 50 1_555 G SG CYS 68 G CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
disulf ? disulf12 H SG CYS 23 H CYS 23 1_555 H SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7DV4 
_atom_sites.fract_transf_matrix[1][1]    0.013229 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007452 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 EDO B 1 201 1 EDO EDO . 
J 3 EDO F 1 201 2 EDO EDO . 
K 4 HOH A 1 201 35 HOH HOH . 
K 4 HOH A 2 202 30 HOH HOH . 
K 4 HOH A 3 203 36 HOH HOH . 
K 4 HOH A 4 204 8 HOH HOH . 
K 4 HOH A 5 205 31 HOH HOH . 
K 4 HOH A 6 206 6 HOH HOH . 
K 4 HOH A 7 207 13 HOH HOH . 
L 4 HOH B 1 301 7 HOH HOH . 
L 4 HOH B 2 302 26 HOH HOH . 
L 4 HOH B 3 303 3 HOH HOH . 
L 4 HOH B 4 304 25 HOH HOH . 
M 4 HOH C 1 201 11 HOH HOH . 
M 4 HOH C 2 202 20 HOH HOH . 
M 4 HOH C 3 203 24 HOH HOH . 
M 4 HOH C 4 204 18 HOH HOH . 
M 4 HOH C 5 205 29 HOH HOH . 
M 4 HOH C 6 206 16 HOH HOH . 
M 4 HOH C 7 207 37 HOH HOH . 
N 4 HOH D 1 201 21 HOH HOH . 
N 4 HOH D 2 202 15 HOH HOH . 
N 4 HOH D 3 203 17 HOH HOH . 
N 4 HOH D 4 204 1 HOH HOH . 
N 4 HOH D 5 205 27 HOH HOH . 
N 4 HOH D 6 206 34 HOH HOH . 
N 4 HOH D 7 207 38 HOH HOH . 
N 4 HOH D 8 208 39 HOH HOH . 
O 4 HOH E 1 201 22 HOH HOH . 
O 4 HOH E 2 202 19 HOH HOH . 
O 4 HOH E 3 203 12 HOH HOH . 
P 4 HOH F 1 301 23 HOH HOH . 
P 4 HOH F 2 302 14 HOH HOH . 
P 4 HOH F 3 303 5 HOH HOH . 
P 4 HOH F 4 304 9 HOH HOH . 
Q 4 HOH G 1 201 33 HOH HOH . 
Q 4 HOH G 2 202 10 HOH HOH . 
Q 4 HOH G 3 203 4 HOH HOH . 
Q 4 HOH G 4 204 32 HOH HOH . 
R 4 HOH H 1 201 40 HOH HOH . 
R 4 HOH H 2 202 2 HOH HOH . 
R 4 HOH H 3 203 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 3 -1.537 59.357 -8.281 1 99.28 ? C1 EDO 201 F 1 
HETATM 2 O O1 EDO . . . J 3 -2.762 58.871 -8.822 1 95.71 ? O1 EDO 201 F 1 
HETATM 3 C C2 EDO . . . J 3 -0.922 60.41 -9.136 1 85.27 ? C2 EDO 201 F 1 
HETATM 4 O O2 EDO . . . J 3 0.121 61.089 -8.476 1 86.97 ? O2 EDO 201 F 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#