data_7DXA # _model_server_result.job_id yhj8-jLTPCf7wz5GfFSKyQ _model_server_result.datetime_utc '2024-11-21 14:20:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GB","auth_seq_id":101}' # _entry.id 7DXA # _exptl.entry_id 7DXA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 27 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DXA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 27 _struct_asym.id GB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C NE2 HIS 215 a HIS 215 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 E NE2 HIS 204 d HIS 214 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? metalc ? metalc3 E OE1 GLU 231 d GLU 241 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? metalc ? metalc4 E NE2 HIS 258 d HIS 268 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 534 n n CHA C4D HEM doub 535 n n CHA HHA HEM sing 536 n n CHB C4A HEM sing 537 n n CHB C1B HEM doub 538 n n CHB HHB HEM sing 539 n n CHC C4B HEM sing 540 n n CHC C1C HEM doub 541 n n CHC HHC HEM sing 542 n n CHD C4C HEM doub 543 n n CHD C1D HEM sing 544 n n CHD HHD HEM sing 545 n n C1A C2A HEM doub 546 n y C1A NA HEM sing 547 n y C2A C3A HEM sing 548 n y C2A CAA HEM sing 549 n n C3A C4A HEM doub 550 n y C3A CMA HEM sing 551 n n C4A NA HEM sing 552 n y CMA HMA HEM sing 553 n n CMA HMAA HEM sing 554 n n CMA HMAB HEM sing 555 n n CAA CBA HEM sing 556 n n CAA HAA HEM sing 557 n n CAA HAAA HEM sing 558 n n CBA CGA HEM sing 559 n n CBA HBA HEM sing 560 n n CBA HBAA HEM sing 561 n n CGA O1A HEM doub 562 n n CGA O2A HEM sing 563 n n C1B C2B HEM sing 564 n n C1B NB HEM sing 565 n n C2B C3B HEM doub 566 n n C2B CMB HEM sing 567 n n C3B C4B HEM sing 568 n n C3B CAB HEM sing 569 n n C4B NB HEM doub 570 n n CMB HMB HEM sing 571 n n CMB HMBA HEM sing 572 n n CMB HMBB HEM sing 573 n n CAB CBB HEM doub 574 n n CAB HAB HEM sing 575 n n CBB HBB HEM sing 576 n n CBB HBBA HEM sing 577 n n C1C C2C HEM sing 578 n y C1C NC HEM sing 579 n y C2C C3C HEM doub 580 n y C2C CMC HEM sing 581 n n C3C C4C HEM sing 582 n y C3C CAC HEM sing 583 n n C4C NC HEM sing 584 n y CMC HMC HEM sing 585 n n CMC HMCA HEM sing 586 n n CMC HMCB HEM sing 587 n n CAC CBC HEM doub 588 n n CAC HAC HEM sing 589 n n CBC HBC HEM sing 590 n n CBC HBCA HEM sing 591 n n C1D C2D HEM sing 592 n n C1D ND HEM doub 593 n n C2D C3D HEM doub 594 n n C2D CMD HEM sing 595 n n C3D C4D HEM sing 596 n n C3D CAD HEM sing 597 n n C4D ND HEM sing 598 n n CMD HMD HEM sing 599 n n CMD HMDA HEM sing 600 n n CMD HMDB HEM sing 601 n n CAD CBD HEM sing 602 n n CAD HAD HEM sing 603 n n CAD HADA HEM sing 604 n n CBD CGD HEM sing 605 n n CBD HBD HEM sing 606 n n CBD HBDA HEM sing 607 n n CGD O1D HEM doub 608 n n CGD O2D HEM sing 609 n n O2A H2A HEM sing 610 n n O2D H2D HEM sing 611 n n FE NA HEM sing 612 n n FE NB HEM sing 613 n n FE NC HEM sing 614 n n FE ND HEM sing 615 n n # _atom_sites.entry_id 7DXA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 15 SQD a 1 401 401 SQD SQD . P 16 CLA a 1 402 402 CLA CLA . Q 16 CLA a 1 403 403 CLA CLA . R 17 PHO a 1 404 404 PHO PHO . S 17 PHO a 1 405 405 PHO PHO . T 16 CLA a 1 406 406 CLA CLA . U 18 BCR a 1 407 407 BCR BCR . V 19 CL a 1 408 408 CL CL . W 20 MGE a 1 409 409 MGE MGE . X 16 CLA b 1 601 601 CLA CLA . Y 16 CLA b 1 602 602 CLA CLA . Z 16 CLA b 1 603 603 CLA CLA . AA 16 CLA b 1 604 604 CLA CLA . BA 16 CLA b 1 605 605 CLA CLA . CA 16 CLA b 1 606 606 CLA CLA . DA 16 CLA b 1 607 607 CLA CLA . EA 16 CLA b 1 608 608 CLA CLA . FA 16 CLA b 1 609 609 CLA CLA . GA 16 CLA b 1 610 610 CLA CLA . HA 16 CLA b 1 611 611 CLA CLA . IA 16 CLA b 1 612 612 CLA CLA . JA 16 CLA b 1 613 613 CLA CLA . KA 16 CLA b 1 614 614 CLA CLA . LA 16 CLA b 1 615 615 CLA CLA . MA 16 CLA b 1 616 616 CLA CLA . NA 18 BCR b 1 617 617 BCR BCR . OA 18 BCR b 1 618 618 BCR BCR . PA 18 BCR b 1 619 619 BCR BCR . QA 20 MGE b 1 620 620 MGE MGE . RA 21 UNL b 1 621 621 UNL UNL . SA 20 MGE b 1 622 622 MGE MGE . TA 22 LMT b 1 623 623 LMT LMT . UA 16 CLA d 1 401 401 CLA CLA . VA 22 LMT d 1 402 402 LMT LMT . WA 23 FE2 d 1 403 403 FE2 FE2 . XA 16 CLA d 1 404 404 CLA CLA . YA 16 CLA d 1 405 405 CLA CLA . ZA 24 PQ9 d 1 406 406 PQ9 PQ9 . AB 18 BCR d 1 407 407 BCR BCR . BB 20 MGE d 1 408 408 MGE MGE . CB 20 MGE d 1 409 409 MGE MGE . DB 20 MGE d 1 410 410 MGE MGE . EB 25 HTG d 1 411 411 HTG HTG . FB 26 DGD d 1 412 412 DGD DGD . GB 27 HEM e 1 101 101 HEM HEM . HB 18 BCR h 1 101 101 BCR BCR . IB 15 SQD l 1 101 101 SQD SQD . JB 20 MGE m 1 101 101 MGE MGE . KB 22 LMT t 1 101 101 LMT LMT . LB 21 UNL x 1 101 101 UNL UNL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . GB 27 148.603 139.04 91.691 1 93.69 ? CHA HEM 101 e 1 HETATM 2 C CHB HEM . . . GB 27 145.486 137.299 88.416 1 93.69 ? CHB HEM 101 e 1 HETATM 3 C CHC HEM . . . GB 27 142.212 140.654 89.726 1 93.69 ? CHC HEM 101 e 1 HETATM 4 C CHD HEM . . . GB 27 145.417 142.528 92.819 1 93.69 ? CHD HEM 101 e 1 HETATM 5 C C1A HEM . . . GB 27 147.992 138.245 90.741 1 93.69 ? C1A HEM 101 e 1 HETATM 6 C C2A HEM . . . GB 27 148.513 137.016 90.265 1 93.69 ? C2A HEM 101 e 1 HETATM 7 C C3A HEM . . . GB 27 147.631 136.528 89.35 1 93.69 ? C3A HEM 101 e 1 HETATM 8 C C4A HEM . . . GB 27 146.577 137.455 89.245 1 93.69 ? C4A HEM 101 e 1 HETATM 9 C CMA HEM . . . GB 27 147.734 135.241 88.569 1 93.69 ? CMA HEM 101 e 1 HETATM 10 C CAA HEM . . . GB 27 149.796 136.35 90.715 1 93.69 ? CAA HEM 101 e 1 HETATM 11 C CBA HEM . . . GB 27 150.993 136.64 89.797 1 93.69 ? CBA HEM 101 e 1 HETATM 12 C CGA HEM . . . GB 27 151.455 138.064 89.958 1 93.69 ? CGA HEM 101 e 1 HETATM 13 O O1A HEM . . . GB 27 151.487 138.821 88.965 1 93.69 ? O1A HEM 101 e 1 HETATM 14 O O2A HEM . . . GB 27 151.804 138.493 91.079 1 93.69 ? O2A HEM 101 e 1 HETATM 15 C C1B HEM . . . GB 27 144.332 138.079 88.536 1 93.69 ? C1B HEM 101 e 1 HETATM 16 C C2B HEM . . . GB 27 143.177 137.817 87.755 1 93.69 ? C2B HEM 101 e 1 HETATM 17 C C3B HEM . . . GB 27 142.237 138.742 88.1 1 93.69 ? C3B HEM 101 e 1 HETATM 18 C C4B HEM . . . GB 27 142.877 139.589 89.129 1 93.69 ? C4B HEM 101 e 1 HETATM 19 C CMB HEM . . . GB 27 143.034 136.714 86.739 1 93.69 ? CMB HEM 101 e 1 HETATM 20 C CAB HEM . . . GB 27 140.872 138.894 87.558 1 93.69 ? CAB HEM 101 e 1 HETATM 21 C CBB HEM . . . GB 27 139.881 138.089 87.927 1 93.69 ? CBB HEM 101 e 1 HETATM 22 C C1C HEM . . . GB 27 142.794 141.437 90.71 1 93.69 ? C1C HEM 101 e 1 HETATM 23 C C2C HEM . . . GB 27 142.153 142.466 91.414 1 93.69 ? C2C HEM 101 e 1 HETATM 24 C C3C HEM . . . GB 27 143.074 142.996 92.288 1 93.69 ? C3C HEM 101 e 1 HETATM 25 C C4C HEM . . . GB 27 144.279 142.277 92.113 1 93.69 ? C4C HEM 101 e 1 HETATM 26 C CMC HEM . . . GB 27 140.726 142.912 91.246 1 93.69 ? CMC HEM 101 e 1 HETATM 27 C CAC HEM . . . GB 27 142.871 144.095 93.237 1 93.69 ? CAC HEM 101 e 1 HETATM 28 C CBC HEM . . . GB 27 143.117 145.339 92.846 1 93.69 ? CBC HEM 101 e 1 HETATM 29 C C1D HEM . . . GB 27 146.516 141.685 92.739 1 93.69 ? C1D HEM 101 e 1 HETATM 30 C C2D HEM . . . GB 27 147.665 141.913 93.607 1 93.69 ? C2D HEM 101 e 1 HETATM 31 C C3D HEM . . . GB 27 148.554 140.956 93.305 1 93.69 ? C3D HEM 101 e 1 HETATM 32 C C4D HEM . . . GB 27 147.947 140.135 92.247 1 93.69 ? C4D HEM 101 e 1 HETATM 33 C CMD HEM . . . GB 27 147.795 143.01 94.633 1 93.69 ? CMD HEM 101 e 1 HETATM 34 C CAD HEM . . . GB 27 149.904 140.787 93.937 1 93.69 ? CAD HEM 101 e 1 HETATM 35 C CBD HEM . . . GB 27 149.855 139.736 95.04 1 93.69 ? CBD HEM 101 e 1 HETATM 36 C CGD HEM . . . GB 27 151.22 139.695 95.671 1 93.69 ? CGD HEM 101 e 1 HETATM 37 O O1D HEM . . . GB 27 151.895 140.746 95.744 1 93.69 ? O1D HEM 101 e 1 HETATM 38 O O2D HEM . . . GB 27 151.663 138.618 96.127 1 93.69 ? O2D HEM 101 e 1 HETATM 39 N NA HEM . . . GB 27 146.798 138.495 90.101 1 93.69 ? NA HEM 101 e 1 HETATM 40 N NB HEM . . . GB 27 144.124 139.128 89.337 1 93.69 ? NB HEM 101 e 1 HETATM 41 N NC HEM . . . GB 27 144.09 141.344 91.134 1 93.69 ? NC HEM 101 e 1 HETATM 42 N ND HEM . . . GB 27 146.727 140.62 91.95 1 93.69 ? ND HEM 101 e 1 HETATM 43 FE FE HEM . . . GB 27 145.542 139.915 90.687 1 93.69 ? FE HEM 101 e 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #