data_7DXA # _model_server_result.job_id wsrUMEtAnbfJKFT3TuUzBw _model_server_result.datetime_utc '2024-11-21 14:13:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IB","auth_seq_id":101}' # _entry.id 7DXA # _exptl.entry_id 7DXA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 795.116 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DXA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 O N N ? 15 IB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C NE2 HIS 215 a HIS 215 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 E NE2 HIS 204 d HIS 214 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? metalc ? metalc3 E OE1 GLU 231 d GLU 241 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? metalc ? metalc4 E NE2 HIS 258 d HIS 268 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? # _chem_comp.formula 'C41 H78 O12 S' _chem_comp.formula_weight 795.116 _chem_comp.id SQD _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SULFOQUINOVOSYLDIACYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C44 SQD sing 1274 n n O6 C1 SQD sing 1275 n n C44 C45 SQD sing 1276 n n C44 H441 SQD sing 1277 n n C44 H442 SQD sing 1278 n n C45 C46 SQD sing 1279 n n C45 O47 SQD sing 1280 n n C45 H45 SQD sing 1281 n n C46 O48 SQD sing 1282 n n C46 H461 SQD sing 1283 n n C46 H462 SQD sing 1284 n n O47 C7 SQD sing 1285 n n C7 O49 SQD doub 1286 n n C7 C8 SQD sing 1287 n n C8 C9 SQD sing 1288 n n C8 H81 SQD sing 1289 n n C8 H82 SQD sing 1290 n n C9 C10 SQD sing 1291 n n C9 H91 SQD sing 1292 n n C9 H92 SQD sing 1293 n n C10 C11 SQD sing 1294 n n C10 H101 SQD sing 1295 n n C10 H102 SQD sing 1296 n n C11 C12 SQD sing 1297 n n C11 H111 SQD sing 1298 n n C11 H112 SQD sing 1299 n n C12 C13 SQD sing 1300 n n C12 H121 SQD sing 1301 n n C12 H122 SQD sing 1302 n n C13 C14 SQD sing 1303 n n C13 H131 SQD sing 1304 n n C13 H132 SQD sing 1305 n n C14 C15 SQD sing 1306 n n C14 H141 SQD sing 1307 n n C14 H142 SQD sing 1308 n n C15 C16 SQD sing 1309 n n C15 H151 SQD sing 1310 n n C15 H152 SQD sing 1311 n n C16 C17 SQD sing 1312 n n C16 H161 SQD sing 1313 n n C16 H162 SQD sing 1314 n n C17 C18 SQD sing 1315 n n C17 H171 SQD sing 1316 n n C17 H172 SQD sing 1317 n n C18 C19 SQD sing 1318 n n C18 H181 SQD sing 1319 n n C18 H182 SQD sing 1320 n n C19 C20 SQD sing 1321 n n C19 H191 SQD sing 1322 n n C19 H192 SQD sing 1323 n n C20 C21 SQD sing 1324 n n C20 H201 SQD sing 1325 n n C20 H202 SQD sing 1326 n n C21 C22 SQD sing 1327 n n C21 H211 SQD sing 1328 n n C21 H212 SQD sing 1329 n n C22 H221 SQD sing 1330 n n C22 H222 SQD sing 1331 n n C22 H223 SQD sing 1332 n n O48 C23 SQD sing 1333 n n C23 O10 SQD doub 1334 n n C23 C24 SQD sing 1335 n n C24 C25 SQD sing 1336 n n C24 H241 SQD sing 1337 n n C24 H242 SQD sing 1338 n n C25 C26 SQD sing 1339 n n C25 H251 SQD sing 1340 n n C25 H252 SQD sing 1341 n n C26 C27 SQD sing 1342 n n C26 H261 SQD sing 1343 n n C26 H262 SQD sing 1344 n n C27 C28 SQD sing 1345 n n C27 H271 SQD sing 1346 n n C27 H272 SQD sing 1347 n n C28 C29 SQD sing 1348 n n C28 H281 SQD sing 1349 n n C28 H282 SQD sing 1350 n n C29 C30 SQD sing 1351 n n C29 H291 SQD sing 1352 n n C29 H292 SQD sing 1353 n n C30 C31 SQD sing 1354 n n C30 H301 SQD sing 1355 n n C30 H302 SQD sing 1356 n n C31 C32 SQD sing 1357 n n C31 H311 SQD sing 1358 n n C31 H312 SQD sing 1359 n n C32 C33 SQD sing 1360 n n C32 H321 SQD sing 1361 n n C32 H322 SQD sing 1362 n n C33 C34 SQD sing 1363 n n C33 H331 SQD sing 1364 n n C33 H332 SQD sing 1365 n n C34 C35 SQD sing 1366 n n C34 H341 SQD sing 1367 n n C34 H342 SQD sing 1368 n n C35 C36 SQD sing 1369 n n C35 H351 SQD sing 1370 n n C35 H352 SQD sing 1371 n n C36 C37 SQD sing 1372 n n C36 H361 SQD sing 1373 n n C36 H362 SQD sing 1374 n n C37 C38 SQD sing 1375 n n C37 H371 SQD sing 1376 n n C37 H372 SQD sing 1377 n n C38 H381 SQD sing 1378 n n C38 H382 SQD sing 1379 n n C38 H383 SQD sing 1380 n n C1 C2 SQD sing 1381 n n C1 O5 SQD sing 1382 n n C1 H1 SQD sing 1383 n n C2 O2 SQD sing 1384 n n C2 C3 SQD sing 1385 n n C2 H2 SQD sing 1386 n n O2 HO2 SQD sing 1387 n n C3 O3 SQD sing 1388 n n C3 C4 SQD sing 1389 n n C3 H3 SQD sing 1390 n n O3 HO3 SQD sing 1391 n n C4 O4 SQD sing 1392 n n C4 C5 SQD sing 1393 n n C4 H4 SQD sing 1394 n n O4 HO4 SQD sing 1395 n n C5 C6 SQD sing 1396 n n C5 O5 SQD sing 1397 n n C5 H5 SQD sing 1398 n n C6 S SQD sing 1399 n n C6 H61 SQD sing 1400 n n C6 H62 SQD sing 1401 n n S O7 SQD doub 1402 n n S O8 SQD sing 1403 n n S O9 SQD doub 1404 n n O8 HO8 SQD sing 1405 n n # _atom_sites.entry_id 7DXA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 15 SQD a 1 401 401 SQD SQD . P 16 CLA a 1 402 402 CLA CLA . Q 16 CLA a 1 403 403 CLA CLA . R 17 PHO a 1 404 404 PHO PHO . S 17 PHO a 1 405 405 PHO PHO . T 16 CLA a 1 406 406 CLA CLA . U 18 BCR a 1 407 407 BCR BCR . V 19 CL a 1 408 408 CL CL . W 20 MGE a 1 409 409 MGE MGE . X 16 CLA b 1 601 601 CLA CLA . Y 16 CLA b 1 602 602 CLA CLA . Z 16 CLA b 1 603 603 CLA CLA . AA 16 CLA b 1 604 604 CLA CLA . BA 16 CLA b 1 605 605 CLA CLA . CA 16 CLA b 1 606 606 CLA CLA . DA 16 CLA b 1 607 607 CLA CLA . EA 16 CLA b 1 608 608 CLA CLA . FA 16 CLA b 1 609 609 CLA CLA . GA 16 CLA b 1 610 610 CLA CLA . HA 16 CLA b 1 611 611 CLA CLA . IA 16 CLA b 1 612 612 CLA CLA . JA 16 CLA b 1 613 613 CLA CLA . KA 16 CLA b 1 614 614 CLA CLA . LA 16 CLA b 1 615 615 CLA CLA . MA 16 CLA b 1 616 616 CLA CLA . NA 18 BCR b 1 617 617 BCR BCR . OA 18 BCR b 1 618 618 BCR BCR . PA 18 BCR b 1 619 619 BCR BCR . QA 20 MGE b 1 620 620 MGE MGE . RA 21 UNL b 1 621 621 UNL UNL . SA 20 MGE b 1 622 622 MGE MGE . TA 22 LMT b 1 623 623 LMT LMT . UA 16 CLA d 1 401 401 CLA CLA . VA 22 LMT d 1 402 402 LMT LMT . WA 23 FE2 d 1 403 403 FE2 FE2 . XA 16 CLA d 1 404 404 CLA CLA . YA 16 CLA d 1 405 405 CLA CLA . ZA 24 PQ9 d 1 406 406 PQ9 PQ9 . AB 18 BCR d 1 407 407 BCR BCR . BB 20 MGE d 1 408 408 MGE MGE . CB 20 MGE d 1 409 409 MGE MGE . DB 20 MGE d 1 410 410 MGE MGE . EB 25 HTG d 1 411 411 HTG HTG . FB 26 DGD d 1 412 412 DGD DGD . GB 27 HEM e 1 101 101 HEM HEM . HB 18 BCR h 1 101 101 BCR BCR . IB 15 SQD l 1 101 101 SQD SQD . JB 20 MGE m 1 101 101 MGE MGE . KB 22 LMT t 1 101 101 LMT LMT . LB 21 UNL x 1 101 101 UNL UNL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 SQD . . . IB 15 152.125 144.159 165.772 1 68.03 ? O6 SQD 101 l 1 HETATM 2 C C44 SQD . . . IB 15 151.906 143.005 164.971 1 68.03 ? C44 SQD 101 l 1 HETATM 3 C C45 SQD . . . IB 15 150.44 142.583 165.06 1 68.03 ? C45 SQD 101 l 1 HETATM 4 C C46 SQD . . . IB 15 149.523 143.719 164.623 1 68.03 ? C46 SQD 101 l 1 HETATM 5 O O47 SQD . . . IB 15 150.164 141.435 164.248 1 68.03 ? O47 SQD 101 l 1 HETATM 6 C C7 SQD . . . IB 15 150.115 140.183 164.994 1 68.03 ? C7 SQD 101 l 1 HETATM 7 O O49 SQD . . . IB 15 150.875 140.004 165.932 1 68.03 ? O49 SQD 101 l 1 HETATM 8 C C8 SQD . . . IB 15 149.113 139.114 164.623 1 68.03 ? C8 SQD 101 l 1 HETATM 9 C C9 SQD . . . IB 15 148.467 138.535 165.877 1 68.03 ? C9 SQD 101 l 1 HETATM 10 C C10 SQD . . . IB 15 147.205 139.293 166.283 1 68.03 ? C10 SQD 101 l 1 HETATM 11 C C11 SQD . . . IB 15 146.08 139.082 165.277 1 68.03 ? C11 SQD 101 l 1 HETATM 12 C C12 SQD . . . IB 15 144.794 139.799 165.679 1 68.03 ? C12 SQD 101 l 1 HETATM 13 C C13 SQD . . . IB 15 143.811 139.8 164.514 1 68.03 ? C13 SQD 101 l 1 HETATM 14 C C14 SQD . . . IB 15 142.404 140.209 164.929 1 68.03 ? C14 SQD 101 l 1 HETATM 15 C C15 SQD . . . IB 15 142.232 141.722 164.969 1 68.03 ? C15 SQD 101 l 1 HETATM 16 C C16 SQD . . . IB 15 140.779 142.12 165.223 1 68.03 ? C16 SQD 101 l 1 HETATM 17 C C17 SQD . . . IB 15 140.202 142.928 164.064 1 68.03 ? C17 SQD 101 l 1 HETATM 18 C C18 SQD . . . IB 15 138.767 143.385 164.33 1 68.03 ? C18 SQD 101 l 1 HETATM 19 C C19 SQD . . . IB 15 138.166 144.064 163.101 1 68.03 ? C19 SQD 101 l 1 HETATM 20 C C20 SQD . . . IB 15 136.64 144.05 163.131 1 68.03 ? C20 SQD 101 l 1 HETATM 21 C C21 SQD . . . IB 15 136.028 143.714 161.769 1 68.03 ? C21 SQD 101 l 1 HETATM 22 C C22 SQD . . . IB 15 136.061 144.876 160.797 1 68.03 ? C22 SQD 101 l 1 HETATM 23 O O48 SQD . . . IB 15 148.422 143.143 163.926 1 68.03 ? O48 SQD 101 l 1 HETATM 24 C C23 SQD . . . IB 15 147.395 143.992 163.359 1 68.03 ? C23 SQD 101 l 1 HETATM 25 O O10 SQD . . . IB 15 147.256 145.115 163.799 1 68.03 ? O10 SQD 101 l 1 HETATM 26 C C24 SQD . . . IB 15 146.503 143.496 162.252 1 68.03 ? C24 SQD 101 l 1 HETATM 27 C C25 SQD . . . IB 15 145.266 142.838 162.841 1 68.03 ? C25 SQD 101 l 1 HETATM 28 C C26 SQD . . . IB 15 144.044 143.085 161.965 1 68.03 ? C26 SQD 101 l 1 HETATM 29 C C27 SQD . . . IB 15 143.612 144.544 162.01 1 68.03 ? C27 SQD 101 l 1 HETATM 30 C C28 SQD . . . IB 15 142.224 144.701 161.405 1 68.03 ? C28 SQD 101 l 1 HETATM 31 C C29 SQD . . . IB 15 141.754 146.15 161.36 1 68.03 ? C29 SQD 101 l 1 HETATM 32 C C30 SQD . . . IB 15 140.378 146.222 160.704 1 68.03 ? C30 SQD 101 l 1 HETATM 33 C C31 SQD . . . IB 15 139.799 147.63 160.702 1 68.03 ? C31 SQD 101 l 1 HETATM 34 C C1 SQD . . . IB 15 153.326 144.059 166.542 1 68.03 ? C1 SQD 101 l 1 HETATM 35 C C2 SQD . . . IB 15 153.916 145.46 166.771 1 68.03 ? C2 SQD 101 l 1 HETATM 36 O O2 SQD . . . IB 15 155.298 145.447 166.394 1 68.03 ? O2 SQD 101 l 1 HETATM 37 C C3 SQD . . . IB 15 153.805 145.881 168.242 1 68.03 ? C3 SQD 101 l 1 HETATM 38 O O3 SQD . . . IB 15 152.457 146.263 168.543 1 68.03 ? O3 SQD 101 l 1 HETATM 39 C C4 SQD . . . IB 15 154.278 144.822 169.253 1 68.03 ? C4 SQD 101 l 1 HETATM 40 O O4 SQD . . . IB 15 155.665 145.026 169.55 1 68.03 ? O4 SQD 101 l 1 HETATM 41 C C5 SQD . . . IB 15 154.067 143.378 168.782 1 68.03 ? C5 SQD 101 l 1 HETATM 42 C C6 SQD . . . IB 15 153.742 142.466 169.959 1 68.03 ? C6 SQD 101 l 1 HETATM 43 O O5 SQD . . . IB 15 153.045 143.35 167.769 1 68.03 ? O5 SQD 101 l 1 HETATM 44 S S SQD . . . IB 15 154.644 141.062 169.808 1 68.03 ? S SQD 101 l 1 HETATM 45 O O7 SQD . . . IB 15 155.208 140.467 171.005 1 68.03 ? O7 SQD 101 l 1 HETATM 46 O O8 SQD . . . IB 15 154.374 140.099 168.497 1 68.03 ? O8 SQD 101 l 1 HETATM 47 O O9 SQD . . . IB 15 153.441 140.443 170.278 1 68.03 ? O9 SQD 101 l 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 47 #