data_7DXA
#
_model_server_result.job_id            BkXEM-VLM10Ggx7fsxdnGQ 
_model_server_result.datetime_utc      '2024-11-21 14:05:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dxa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"ZA","auth_seq_id":406}' 
#
_entry.id    7DXA 
#
_exptl.entry_id    7DXA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              612.967 
_entity.id                          24 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DXA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DXA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      24 
_struct_asym.id                             ZA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NE2 HIS 215 a HIS 215 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc2 E NE2 HIS 204 d HIS 214 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? 
metalc ? metalc3 E OE1 GLU 231 d GLU 241 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? 
metalc ? metalc4 E NE2 HIS 258 d HIS 268 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
#
_chem_comp.formula           'C43 H64 O2' 
_chem_comp.formula_weight    612.967 
_chem_comp.id                PQ9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PQ9 doub 1135 n n 
C1 C2 PQ9 sing 1136 n n 
C1 C10 PQ9 sing 1137 n n 
C2 C3 PQ9 doub 1138 n n 
C2 C11 PQ9 sing 1139 n n 
C3 C4 PQ9 sing 1140 n n 
C3 H3 PQ9 sing 1141 n n 
C4 O4 PQ9 doub 1142 n n 
C4 C5 PQ9 sing 1143 n n 
C5 C6 PQ9 sing 1144 n n 
C5 C10 PQ9 doub 1145 n n 
C6 H61 PQ9 sing 1146 n n 
C6 H62 PQ9 sing 1147 n n 
C6 H63 PQ9 sing 1148 n n 
C9 C10 PQ9 sing 1149 n n 
C9 H91 PQ9 sing 1150 n n 
C9 H92 PQ9 sing 1151 n n 
C9 H93 PQ9 sing 1152 n n 
C11 C12 PQ9 sing 1153 n n 
C11 H111 PQ9 sing 1154 n n 
C11 H112 PQ9 sing 1155 n n 
C12 C13 PQ9 doub 1156 e n 
C12 H12 PQ9 sing 1157 n n 
C13 C14 PQ9 sing 1158 n n 
C13 C15 PQ9 sing 1159 n n 
C14 H141 PQ9 sing 1160 n n 
C14 H142 PQ9 sing 1161 n n 
C14 H143 PQ9 sing 1162 n n 
C15 C16 PQ9 sing 1163 n n 
C15 H151 PQ9 sing 1164 n n 
C15 H152 PQ9 sing 1165 n n 
C16 C17 PQ9 sing 1166 n n 
C16 H161 PQ9 sing 1167 n n 
C16 H162 PQ9 sing 1168 n n 
C17 C18 PQ9 doub 1169 e n 
C17 H17 PQ9 sing 1170 n n 
C18 C19 PQ9 sing 1171 n n 
C18 C20 PQ9 sing 1172 n n 
C19 H191 PQ9 sing 1173 n n 
C19 H192 PQ9 sing 1174 n n 
C19 H193 PQ9 sing 1175 n n 
C20 C21 PQ9 sing 1176 n n 
C20 H201 PQ9 sing 1177 n n 
C20 H202 PQ9 sing 1178 n n 
C21 C22 PQ9 sing 1179 n n 
C21 H211 PQ9 sing 1180 n n 
C21 H212 PQ9 sing 1181 n n 
C22 C23 PQ9 doub 1182 e n 
C22 H22 PQ9 sing 1183 n n 
C23 C24 PQ9 sing 1184 n n 
C23 C25 PQ9 sing 1185 n n 
C24 H241 PQ9 sing 1186 n n 
C24 H242 PQ9 sing 1187 n n 
C24 H243 PQ9 sing 1188 n n 
C25 C26 PQ9 sing 1189 n n 
C25 H251 PQ9 sing 1190 n n 
C25 H252 PQ9 sing 1191 n n 
C26 C27 PQ9 sing 1192 n n 
C26 H261 PQ9 sing 1193 n n 
C26 H262 PQ9 sing 1194 n n 
C27 C28 PQ9 doub 1195 e n 
C27 H27 PQ9 sing 1196 n n 
C28 C29 PQ9 sing 1197 n n 
C28 C30 PQ9 sing 1198 n n 
C29 H291 PQ9 sing 1199 n n 
C29 H292 PQ9 sing 1200 n n 
C29 H293 PQ9 sing 1201 n n 
C30 C31 PQ9 sing 1202 n n 
C30 H301 PQ9 sing 1203 n n 
C30 H302 PQ9 sing 1204 n n 
C31 C32 PQ9 sing 1205 n n 
C31 H311 PQ9 sing 1206 n n 
C31 H312 PQ9 sing 1207 n n 
C32 C33 PQ9 doub 1208 e n 
C32 H32 PQ9 sing 1209 n n 
C33 C34 PQ9 sing 1210 n n 
C33 C35 PQ9 sing 1211 n n 
C34 H341 PQ9 sing 1212 n n 
C34 H342 PQ9 sing 1213 n n 
C34 H343 PQ9 sing 1214 n n 
C35 C36 PQ9 sing 1215 n n 
C35 H351 PQ9 sing 1216 n n 
C35 H352 PQ9 sing 1217 n n 
C36 C37 PQ9 sing 1218 n n 
C36 H361 PQ9 sing 1219 n n 
C36 H362 PQ9 sing 1220 n n 
C37 C38 PQ9 doub 1221 e n 
C37 H37 PQ9 sing 1222 n n 
C38 C39 PQ9 sing 1223 n n 
C38 C40 PQ9 sing 1224 n n 
C39 H391 PQ9 sing 1225 n n 
C39 H392 PQ9 sing 1226 n n 
C39 H393 PQ9 sing 1227 n n 
C40 C41 PQ9 sing 1228 n n 
C40 H401 PQ9 sing 1229 n n 
C40 H402 PQ9 sing 1230 n n 
C41 C42 PQ9 sing 1231 n n 
C41 H411 PQ9 sing 1232 n n 
C41 H412 PQ9 sing 1233 n n 
C42 C43 PQ9 doub 1234 n n 
C42 H42 PQ9 sing 1235 n n 
C43 C44 PQ9 sing 1236 n n 
C43 C45 PQ9 sing 1237 n n 
C44 H441 PQ9 sing 1238 n n 
C44 H442 PQ9 sing 1239 n n 
C44 H443 PQ9 sing 1240 n n 
C45 H451 PQ9 sing 1241 n n 
C45 H452 PQ9 sing 1242 n n 
C45 H453 PQ9 sing 1243 n n 
#
_atom_sites.entry_id                     7DXA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 15 SQD a 1 401 401 SQD SQD . 
P 16 CLA a 1 402 402 CLA CLA . 
Q 16 CLA a 1 403 403 CLA CLA . 
R 17 PHO a 1 404 404 PHO PHO . 
S 17 PHO a 1 405 405 PHO PHO . 
T 16 CLA a 1 406 406 CLA CLA . 
U 18 BCR a 1 407 407 BCR BCR . 
V 19 CL a 1 408 408 CL CL . 
W 20 MGE a 1 409 409 MGE MGE . 
X 16 CLA b 1 601 601 CLA CLA . 
Y 16 CLA b 1 602 602 CLA CLA . 
Z 16 CLA b 1 603 603 CLA CLA . 
AA 16 CLA b 1 604 604 CLA CLA . 
BA 16 CLA b 1 605 605 CLA CLA . 
CA 16 CLA b 1 606 606 CLA CLA . 
DA 16 CLA b 1 607 607 CLA CLA . 
EA 16 CLA b 1 608 608 CLA CLA . 
FA 16 CLA b 1 609 609 CLA CLA . 
GA 16 CLA b 1 610 610 CLA CLA . 
HA 16 CLA b 1 611 611 CLA CLA . 
IA 16 CLA b 1 612 612 CLA CLA . 
JA 16 CLA b 1 613 613 CLA CLA . 
KA 16 CLA b 1 614 614 CLA CLA . 
LA 16 CLA b 1 615 615 CLA CLA . 
MA 16 CLA b 1 616 616 CLA CLA . 
NA 18 BCR b 1 617 617 BCR BCR . 
OA 18 BCR b 1 618 618 BCR BCR . 
PA 18 BCR b 1 619 619 BCR BCR . 
QA 20 MGE b 1 620 620 MGE MGE . 
RA 21 UNL b 1 621 621 UNL UNL . 
SA 20 MGE b 1 622 622 MGE MGE . 
TA 22 LMT b 1 623 623 LMT LMT . 
UA 16 CLA d 1 401 401 CLA CLA . 
VA 22 LMT d 1 402 402 LMT LMT . 
WA 23 FE2 d 1 403 403 FE2 FE2 . 
XA 16 CLA d 1 404 404 CLA CLA . 
YA 16 CLA d 1 405 405 CLA CLA . 
ZA 24 PQ9 d 1 406 406 PQ9 PQ9 . 
AB 18 BCR d 1 407 407 BCR BCR . 
BB 20 MGE d 1 408 408 MGE MGE . 
CB 20 MGE d 1 409 409 MGE MGE . 
DB 20 MGE d 1 410 410 MGE MGE . 
EB 25 HTG d 1 411 411 HTG HTG . 
FB 26 DGD d 1 412 412 DGD DGD . 
GB 27 HEM e 1 101 101 HEM HEM . 
HB 18 BCR h 1 101 101 BCR BCR . 
IB 15 SQD l 1 101 101 SQD SQD . 
JB 20 MGE m 1 101 101 MGE MGE . 
KB 22 LMT t 1 101 101 LMT LMT . 
LB 21 UNL x 1 101 101 UNL UNL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PQ9 . . . ZA 24 153.368 150.769 142.767 1 29.86 ? C1 PQ9 406 d 1 
HETATM 2 O O1 PQ9 . . . ZA 24 153.212 150.894 143.99 1 29.86 ? O1 PQ9 406 d 1 
HETATM 3 C C2 PQ9 . . . ZA 24 152.413 151.397 141.838 1 29.86 ? C2 PQ9 406 d 1 
HETATM 4 C C3 PQ9 . . . ZA 24 152.601 151.278 140.465 1 29.86 ? C3 PQ9 406 d 1 
HETATM 5 C C4 PQ9 . . . ZA 24 153.662 150.55 139.927 1 29.86 ? C4 PQ9 406 d 1 
HETATM 6 O O4 PQ9 . . . ZA 24 153.813 150.436 138.7 1 29.86 ? O4 PQ9 406 d 1 
HETATM 7 C C5 PQ9 . . . ZA 24 154.654 149.89 140.788 1 29.86 ? C5 PQ9 406 d 1 
HETATM 8 C C6 PQ9 . . . ZA 24 155.787 149.124 140.173 1 29.86 ? C6 PQ9 406 d 1 
HETATM 9 C C9 PQ9 . . . ZA 24 155.478 149.345 143.178 1 29.86 ? C9 PQ9 406 d 1 
HETATM 10 C C10 PQ9 . . . ZA 24 154.506 150 142.247 1 29.86 ? C10 PQ9 406 d 1 
HETATM 11 C C11 PQ9 . . . ZA 24 151.279 152.2 142.43 1 29.86 ? C11 PQ9 406 d 1 
HETATM 12 C C12 PQ9 . . . ZA 24 149.917 151.543 142.45 1 29.86 ? C12 PQ9 406 d 1 
HETATM 13 C C13 PQ9 . . . ZA 24 149.005 151.801 143.411 1 29.86 ? C13 PQ9 406 d 1 
HETATM 14 C C14 PQ9 . . . ZA 24 149.314 152.751 144.525 1 29.86 ? C14 PQ9 406 d 1 
HETATM 15 C C15 PQ9 . . . ZA 24 147.655 151.122 143.387 1 29.86 ? C15 PQ9 406 d 1 
HETATM 16 C C16 PQ9 . . . ZA 24 146.526 152.108 143.099 1 29.86 ? C16 PQ9 406 d 1 
HETATM 17 C C17 PQ9 . . . ZA 24 145.366 151.412 142.408 1 29.86 ? C17 PQ9 406 d 1 
HETATM 18 C C18 PQ9 . . . ZA 24 144.066 151.731 142.569 1 29.86 ? C18 PQ9 406 d 1 
HETATM 19 C C19 PQ9 . . . ZA 24 143.681 152.867 143.468 1 29.86 ? C19 PQ9 406 d 1 
HETATM 20 C C20 PQ9 . . . ZA 24 142.991 150.968 141.813 1 29.86 ? C20 PQ9 406 d 1 
HETATM 21 C C21 PQ9 . . . ZA 24 141.735 150.745 142.653 1 29.86 ? C21 PQ9 406 d 1 
HETATM 22 C C22 PQ9 . . . ZA 24 140.534 150.328 141.82 1 29.86 ? C22 PQ9 406 d 1 
HETATM 23 C C23 PQ9 . . . ZA 24 139.761 149.261 142.116 1 29.86 ? C23 PQ9 406 d 1 
HETATM 24 C C24 PQ9 . . . ZA 24 140.068 148.394 143.301 1 29.86 ? C24 PQ9 406 d 1 
HETATM 25 C C25 PQ9 . . . ZA 24 138.575 148.912 141.243 1 29.86 ? C25 PQ9 406 d 1 
HETATM 26 C C26 PQ9 . . . ZA 24 137.366 148.48 142.062 1 29.86 ? C26 PQ9 406 d 1 
HETATM 27 C C27 PQ9 . . . ZA 24 136.503 147.522 141.27 1 29.86 ? C27 PQ9 406 d 1 
HETATM 28 C C28 PQ9 . . . ZA 24 135.3 147.074 141.697 1 29.86 ? C28 PQ9 406 d 1 
HETATM 29 C C29 PQ9 . . . ZA 24 134.573 146.135 140.792 1 29.86 ? C29 PQ9 406 d 1 
HETATM 30 C C30 PQ9 . . . ZA 24 134.643 147.486 143.013 1 29.86 ? C30 PQ9 406 d 1 
HETATM 31 C C31 PQ9 . . . ZA 24 133.689 148.625 142.684 1 29.86 ? C31 PQ9 406 d 1 
HETATM 32 C C32 PQ9 . . . ZA 24 132.785 149.23 143.744 1 29.86 ? C32 PQ9 406 d 1 
HETATM 33 C C33 PQ9 . . . ZA 24 132.992 150.45 144.285 1 29.86 ? C33 PQ9 406 d 1 
HETATM 34 C C34 PQ9 . . . ZA 24 134.194 151.255 143.922 1 29.86 ? C34 PQ9 406 d 1 
HETATM 35 C C35 PQ9 . . . ZA 24 132.058 151.047 145.317 1 29.86 ? C35 PQ9 406 d 1 
HETATM 36 C C36 PQ9 . . . ZA 24 131.837 152.533 145.025 1 29.86 ? C36 PQ9 406 d 1 
HETATM 37 C C37 PQ9 . . . ZA 24 131.228 153.27 146.198 1 29.86 ? C37 PQ9 406 d 1 
HETATM 38 C C38 PQ9 . . . ZA 24 131.905 154.155 146.949 1 29.86 ? C38 PQ9 406 d 1 
HETATM 39 C C39 PQ9 . . . ZA 24 133.354 154.436 146.673 1 29.86 ? C39 PQ9 406 d 1 
HETATM 40 C C40 PQ9 . . . ZA 24 131.171 154.831 148.089 1 29.86 ? C40 PQ9 406 d 1 
HETATM 41 C C41 PQ9 . . . ZA 24 131.96 155.958 148.758 1 29.86 ? C41 PQ9 406 d 1 
HETATM 42 C C42 PQ9 . . . ZA 24 131.418 157.31 148.351 1 29.86 ? C42 PQ9 406 d 1 
HETATM 43 C C43 PQ9 . . . ZA 24 130.905 158.192 149.229 1 29.86 ? C43 PQ9 406 d 1 
HETATM 44 C C44 PQ9 . . . ZA 24 130.394 159.509 148.738 1 29.86 ? C44 PQ9 406 d 1 
HETATM 45 C C45 PQ9 . . . ZA 24 130.825 157.902 150.699 1 29.86 ? C45 PQ9 406 d 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           45 
#