data_7DXA
#
_model_server_result.job_id            thP3Ca4gP6uCvU9Wvas3aQ 
_model_server_result.datetime_utc      '2024-11-23 09:49:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dxa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BB","auth_seq_id":408}' 
#
_entry.id    7DXA 
#
_exptl.entry_id    7DXA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              688.972 
_entity.id                          20 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DXA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DXA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 20 W N N 
? 20 QA N N 
? 20 SA N N 
? 20 BB N N 
? 20 CB N N 
? 20 DB N N 
? 20 JB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NE2 HIS 215 a HIS 215 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc2 E NE2 HIS 204 d HIS 214 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? 
metalc ? metalc3 E OE1 GLU 231 d GLU 241 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? 
metalc ? metalc4 E NE2 HIS 258 d HIS 268 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
#
_chem_comp.formula           'C38 H72 O10' 
_chem_comp.formula_weight    688.972 
_chem_comp.id                MGE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     MONOGALACTOSYL-DIACYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1A C2A MGE sing 849 n n 
C1A O1A MGE doub 850 n n 
C1A O1G MGE sing 851 n n 
C2A C3A MGE sing 852 n n 
C2A H2A1 MGE sing 853 n n 
C2A H2A2 MGE sing 854 n n 
C3A C4A MGE sing 855 n n 
C3A H3A1 MGE sing 856 n n 
C3A H3A2 MGE sing 857 n n 
C4A C5A MGE sing 858 n n 
C4A H4A1 MGE sing 859 n n 
C4A H4A2 MGE sing 860 n n 
C5A C6A MGE sing 861 n n 
C5A H5A1 MGE sing 862 n n 
C5A H5A2 MGE sing 863 n n 
C6A C7A MGE sing 864 n n 
C6A H6A1 MGE sing 865 n n 
C6A H6A2 MGE sing 866 n n 
C7A C8A MGE sing 867 n n 
C7A H7A1 MGE sing 868 n n 
C7A H7A2 MGE sing 869 n n 
C8A C9A MGE sing 870 n n 
C8A H8A1 MGE sing 871 n n 
C8A H8A2 MGE sing 872 n n 
C9A CAA MGE sing 873 n n 
C9A H9A1 MGE sing 874 n n 
C9A H9A2 MGE sing 875 n n 
CAA CBA MGE sing 876 n n 
CAA H101 MGE sing 877 n n 
CAA H102 MGE sing 878 n n 
CBA CCA MGE sing 879 n n 
CBA H111 MGE sing 880 n n 
CBA H112 MGE sing 881 n n 
CCA CDA MGE sing 882 n n 
CCA H121 MGE sing 883 n n 
CCA H122 MGE sing 884 n n 
CDA H131 MGE sing 885 n n 
CDA H132 MGE sing 886 n n 
CDA H133 MGE sing 887 n n 
C1B C2B MGE sing 888 n n 
C1B O1B MGE doub 889 n n 
C1B O2G MGE sing 890 n n 
C2B C3B MGE sing 891 n n 
C2B H2B1 MGE sing 892 n n 
C2B H2B2 MGE sing 893 n n 
C3B C4B MGE sing 894 n n 
C3B H3B1 MGE sing 895 n n 
C3B H3B2 MGE sing 896 n n 
C4B C5B MGE sing 897 n n 
C4B H4B1 MGE sing 898 n n 
C4B H4B2 MGE sing 899 n n 
C5B C6B MGE sing 900 n n 
C5B H5B1 MGE sing 901 n n 
C5B H5B2 MGE sing 902 n n 
C6B C7B MGE sing 903 n n 
C6B H6B1 MGE sing 904 n n 
C6B H6B2 MGE sing 905 n n 
C7B C8B MGE sing 906 n n 
C7B H7B1 MGE sing 907 n n 
C7B H7B2 MGE sing 908 n n 
C8B C9B MGE sing 909 n n 
C8B H8B1 MGE sing 910 n n 
C8B H8B2 MGE sing 911 n n 
C9B CAB MGE sing 912 n n 
C9B H9B1 MGE sing 913 n n 
C9B H9B2 MGE sing 914 n n 
CAB CBB MGE sing 915 n n 
CAB H201 MGE sing 916 n n 
CAB H202 MGE sing 917 n n 
CBB CCB MGE sing 918 n n 
CBB H211 MGE sing 919 n n 
CBB H212 MGE sing 920 n n 
CCB CDB MGE sing 921 n n 
CCB H221 MGE sing 922 n n 
CCB H222 MGE sing 923 n n 
CDB CEB MGE sing 924 n n 
CDB H231 MGE sing 925 n n 
CDB H232 MGE sing 926 n n 
CEB CFB MGE sing 927 n n 
CEB H241 MGE sing 928 n n 
CEB H242 MGE sing 929 n n 
CFB CGB MGE sing 930 n n 
CFB H251 MGE sing 931 n n 
CFB H252 MGE sing 932 n n 
CGB H261 MGE sing 933 n n 
CGB H262 MGE sing 934 n n 
CGB H263 MGE sing 935 n n 
O1G C1G MGE sing 936 n n 
C1G C2G MGE sing 937 n n 
C1G H1G1 MGE sing 938 n n 
C1G H1G2 MGE sing 939 n n 
C2G O2G MGE sing 940 n n 
C2G C3G MGE sing 941 n n 
C2G H2G MGE sing 942 n n 
C3G O3G MGE sing 943 n n 
C3G H3G1 MGE sing 944 n n 
C3G H3G2 MGE sing 945 n n 
O3G C1D MGE sing 946 n n 
C1D C2D MGE sing 947 n n 
C1D O6D MGE sing 948 n n 
C1D H1D MGE sing 949 n n 
C2D O2D MGE sing 950 n n 
C2D C3D MGE sing 951 n n 
C2D H2D MGE sing 952 n n 
O2D H4 MGE sing 953 n n 
C3D O3D MGE sing 954 n n 
C3D C4D MGE sing 955 n n 
C3D H3D MGE sing 956 n n 
O3D H3 MGE sing 957 n n 
C4D O4D MGE sing 958 n n 
C4D C5D MGE sing 959 n n 
C4D H4D MGE sing 960 n n 
O4D H2 MGE sing 961 n n 
C5D C6D MGE sing 962 n n 
C5D O6D MGE sing 963 n n 
C5D H5D MGE sing 964 n n 
O5D C6D MGE sing 965 n n 
O5D H1 MGE sing 966 n n 
C6D H6D1 MGE sing 967 n n 
C6D H6D2 MGE sing 968 n n 
#
_atom_sites.entry_id                     7DXA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 15 SQD a 1 401 401 SQD SQD . 
P 16 CLA a 1 402 402 CLA CLA . 
Q 16 CLA a 1 403 403 CLA CLA . 
R 17 PHO a 1 404 404 PHO PHO . 
S 17 PHO a 1 405 405 PHO PHO . 
T 16 CLA a 1 406 406 CLA CLA . 
U 18 BCR a 1 407 407 BCR BCR . 
V 19 CL a 1 408 408 CL CL . 
W 20 MGE a 1 409 409 MGE MGE . 
X 16 CLA b 1 601 601 CLA CLA . 
Y 16 CLA b 1 602 602 CLA CLA . 
Z 16 CLA b 1 603 603 CLA CLA . 
AA 16 CLA b 1 604 604 CLA CLA . 
BA 16 CLA b 1 605 605 CLA CLA . 
CA 16 CLA b 1 606 606 CLA CLA . 
DA 16 CLA b 1 607 607 CLA CLA . 
EA 16 CLA b 1 608 608 CLA CLA . 
FA 16 CLA b 1 609 609 CLA CLA . 
GA 16 CLA b 1 610 610 CLA CLA . 
HA 16 CLA b 1 611 611 CLA CLA . 
IA 16 CLA b 1 612 612 CLA CLA . 
JA 16 CLA b 1 613 613 CLA CLA . 
KA 16 CLA b 1 614 614 CLA CLA . 
LA 16 CLA b 1 615 615 CLA CLA . 
MA 16 CLA b 1 616 616 CLA CLA . 
NA 18 BCR b 1 617 617 BCR BCR . 
OA 18 BCR b 1 618 618 BCR BCR . 
PA 18 BCR b 1 619 619 BCR BCR . 
QA 20 MGE b 1 620 620 MGE MGE . 
RA 21 UNL b 1 621 621 UNL UNL . 
SA 20 MGE b 1 622 622 MGE MGE . 
TA 22 LMT b 1 623 623 LMT LMT . 
UA 16 CLA d 1 401 401 CLA CLA . 
VA 22 LMT d 1 402 402 LMT LMT . 
WA 23 FE2 d 1 403 403 FE2 FE2 . 
XA 16 CLA d 1 404 404 CLA CLA . 
YA 16 CLA d 1 405 405 CLA CLA . 
ZA 24 PQ9 d 1 406 406 PQ9 PQ9 . 
AB 18 BCR d 1 407 407 BCR BCR . 
BB 20 MGE d 1 408 408 MGE MGE . 
CB 20 MGE d 1 409 409 MGE MGE . 
DB 20 MGE d 1 410 410 MGE MGE . 
EB 25 HTG d 1 411 411 HTG HTG . 
FB 26 DGD d 1 412 412 DGD DGD . 
GB 27 HEM e 1 101 101 HEM HEM . 
HB 18 BCR h 1 101 101 BCR BCR . 
IB 15 SQD l 1 101 101 SQD SQD . 
JB 20 MGE m 1 101 101 MGE MGE . 
KB 22 LMT t 1 101 101 LMT LMT . 
LB 21 UNL x 1 101 101 UNL UNL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1A MGE . . . BB 20 134.474 156.005 105.593 1 42.33 ? C1A MGE 408 d 1 
HETATM 2 C C2A MGE . . . BB 20 135.232 155.439 106.762 1 42.33 ? C2A MGE 408 d 1 
HETATM 3 C C3A MGE . . . BB 20 134.407 154.37 107.455 1 42.33 ? C3A MGE 408 d 1 
HETATM 4 C C4A MGE . . . BB 20 135.268 153.582 108.431 1 42.33 ? C4A MGE 408 d 1 
HETATM 5 C C5A MGE . . . BB 20 136.357 152.824 107.689 1 42.33 ? C5A MGE 408 d 1 
HETATM 6 C C6A MGE . . . BB 20 136.757 151.563 108.443 1 42.33 ? C6A MGE 408 d 1 
HETATM 7 C C7A MGE . . . BB 20 137.833 150.797 107.682 1 42.33 ? C7A MGE 408 d 1 
HETATM 8 C C8A MGE . . . BB 20 138.069 149.423 108.299 1 42.33 ? C8A MGE 408 d 1 
HETATM 9 C C9A MGE . . . BB 20 138.931 148.533 107.407 1 42.33 ? C9A MGE 408 d 1 
HETATM 10 C CAA MGE . . . BB 20 138.336 148.379 106.01 1 42.33 ? CAA MGE 408 d 1 
HETATM 11 C CBA MGE . . . BB 20 138.869 147.138 105.309 1 42.33 ? CBA MGE 408 d 1 
HETATM 12 C CCA MGE . . . BB 20 140.378 147.223 105.126 1 42.33 ? CCA MGE 408 d 1 
HETATM 13 O O1A MGE . . . BB 20 134.456 155.432 104.524 1 42.33 ? O1A MGE 408 d 1 
HETATM 14 C C1B MGE . . . BB 20 133.81 160.705 106.563 1 42.33 ? C1B MGE 408 d 1 
HETATM 15 C C2B MGE . . . BB 20 135.011 161.412 107.137 1 42.33 ? C2B MGE 408 d 1 
HETATM 16 C C3B MGE . . . BB 20 136.119 160.416 107.448 1 42.33 ? C3B MGE 408 d 1 
HETATM 17 C C4B MGE . . . BB 20 135.896 159.722 108.788 1 42.33 ? C4B MGE 408 d 1 
HETATM 18 C C5B MGE . . . BB 20 136.99 158.695 109.056 1 42.33 ? C5B MGE 408 d 1 
HETATM 19 C C6B MGE . . . BB 20 136.843 158.067 110.436 1 42.33 ? C6B MGE 408 d 1 
HETATM 20 C C7B MGE . . . BB 20 137.549 158.89 111.508 1 42.33 ? C7B MGE 408 d 1 
HETATM 21 C C8B MGE . . . BB 20 138.656 158.084 112.182 1 42.33 ? C8B MGE 408 d 1 
HETATM 22 C C9B MGE . . . BB 20 139.561 158.98 113.021 1 42.33 ? C9B MGE 408 d 1 
HETATM 23 C CAB MGE . . . BB 20 140.812 158.246 113.497 1 42.33 ? CAB MGE 408 d 1 
HETATM 24 C CBB MGE . . . BB 20 141.653 157.764 112.32 1 42.33 ? CBB MGE 408 d 1 
HETATM 25 C CCB MGE . . . BB 20 143.086 157.442 112.733 1 42.33 ? CCB MGE 408 d 1 
HETATM 26 C CDB MGE . . . BB 20 143.829 156.763 111.587 1 42.33 ? CDB MGE 408 d 1 
HETATM 27 C CEB MGE . . . BB 20 145.339 156.97 111.664 1 42.33 ? CEB MGE 408 d 1 
HETATM 28 C CFB MGE . . . BB 20 146.015 156.44 110.402 1 42.33 ? CFB MGE 408 d 1 
HETATM 29 C CGB MGE . . . BB 20 147.489 156.786 110.358 1 42.33 ? CGB MGE 408 d 1 
HETATM 30 O O1B MGE . . . BB 20 132.765 160.702 107.177 1 42.33 ? O1B MGE 408 d 1 
HETATM 31 O O1G MGE . . . BB 20 133.756 157.253 105.725 1 42.33 ? O1G MGE 408 d 1 
HETATM 32 C C1G MGE . . . BB 20 133.235 157.866 104.558 1 42.33 ? C1G MGE 408 d 1 
HETATM 33 C C2G MGE . . . BB 20 132.762 159.256 104.932 1 42.33 ? C2G MGE 408 d 1 
HETATM 34 O O2G MGE . . . BB 20 133.9 160.04 105.271 1 42.33 ? O2G MGE 408 d 1 
HETATM 35 C C3G MGE . . . BB 20 132.004 159.837 103.749 1 42.33 ? C3G MGE 408 d 1 
HETATM 36 O O3G MGE . . . BB 20 131.918 161.247 103.907 1 42.33 ? O3G MGE 408 d 1 
HETATM 37 C C1D MGE . . . BB 20 130.656 161.589 104.46 1 42.33 ? C1D MGE 408 d 1 
HETATM 38 C C2D MGE . . . BB 20 130.593 163.062 104.879 1 42.33 ? C2D MGE 408 d 1 
HETATM 39 O O2D MGE . . . BB 20 131.55 163.853 104.174 1 42.33 ? O2D MGE 408 d 1 
HETATM 40 C C3D MGE . . . BB 20 129.172 163.577 104.638 1 42.33 ? C3D MGE 408 d 1 
HETATM 41 O O3D MGE . . . BB 20 129.111 164.966 104.97 1 42.33 ? O3D MGE 408 d 1 
HETATM 42 C C4D MGE . . . BB 20 128.639 163.371 103.216 1 42.33 ? C4D MGE 408 d 1 
HETATM 43 O O4D MGE . . . BB 20 129.021 164.493 102.425 1 42.33 ? O4D MGE 408 d 1 
HETATM 44 C C5D MGE . . . BB 20 129.144 162.085 102.568 1 42.33 ? C5D MGE 408 d 1 
HETATM 45 O O5D MGE . . . BB 20 127.787 162.179 100.614 1 42.33 ? O5D MGE 408 d 1 
HETATM 46 C C6D MGE . . . BB 20 128.041 161.409 101.785 1 42.33 ? C6D MGE 408 d 1 
HETATM 47 O O6D MGE . . . BB 20 129.593 161.184 103.578 1 42.33 ? O6D MGE 408 d 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           47 
#