data_7DXA
#
_model_server_result.job_id            yWGWEejM4mPnkDTr3O3cMw 
_model_server_result.datetime_utc      '2024-11-23 09:57:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dxa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EB","auth_seq_id":411}' 
#
_entry.id    7DXA 
#
_exptl.entry_id    7DXA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              294.408 
_entity.id                          25 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'heptyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DXA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DXA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      25 
_struct_asym.id                             EB 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NE2 HIS 215 a HIS 215 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc2 E NE2 HIS 204 d HIS 214 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? 
metalc ? metalc3 E OE1 GLU 231 d GLU 241 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? 
metalc ? metalc4 E NE2 HIS 258 d HIS 268 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
#
_chem_comp.formula           'C13 H26 O5 S' 
_chem_comp.formula_weight    294.408 
_chem_comp.id                HTG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'heptyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'HEPTYL 1-THIOHEXOPYRANOSIDE;heptyl 1-thio-beta-D-glucoside;heptyl 1-thio-D-glucoside;heptyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 S1 HTG sing 637 n n 
C1 C2 HTG sing 638 n n 
C1 O5 HTG sing 639 n n 
C1 H1 HTG sing 640 n n 
S1 C1' HTG sing 641 n n 
C2 O2 HTG sing 642 n n 
C2 C3 HTG sing 643 n n 
C2 H2 HTG sing 644 n n 
O2 HO2 HTG sing 645 n n 
C3 O3 HTG sing 646 n n 
C3 C4 HTG sing 647 n n 
C3 H3 HTG sing 648 n n 
O3 HO3 HTG sing 649 n n 
C4 O4 HTG sing 650 n n 
C4 C5 HTG sing 651 n n 
C4 H4 HTG sing 652 n n 
O4 HO4 HTG sing 653 n n 
C5 O5 HTG sing 654 n n 
C5 C6 HTG sing 655 n n 
C5 H5 HTG sing 656 n n 
C6 O6 HTG sing 657 n n 
C6 H61 HTG sing 658 n n 
C6 H62 HTG sing 659 n n 
O6 HO6 HTG sing 660 n n 
C1' C2' HTG sing 661 n n 
C1' "H1'1" HTG sing 662 n n 
C1' "H1'2" HTG sing 663 n n 
C2' C3' HTG sing 664 n n 
C2' "H2'1" HTG sing 665 n n 
C2' "H2'2" HTG sing 666 n n 
C3' C4' HTG sing 667 n n 
C3' "H3'1" HTG sing 668 n n 
C3' "H3'2" HTG sing 669 n n 
C4' C5' HTG sing 670 n n 
C4' "H4'1" HTG sing 671 n n 
C4' "H4'2" HTG sing 672 n n 
C5' C6' HTG sing 673 n n 
C5' "H5'1" HTG sing 674 n n 
C5' "H5'2" HTG sing 675 n n 
C6' C7' HTG sing 676 n n 
C6' "H6'1" HTG sing 677 n n 
C6' "H6'2" HTG sing 678 n n 
C7' "H7'1" HTG sing 679 n n 
C7' "H7'2" HTG sing 680 n n 
C7' "H7'3" HTG sing 681 n n 
#
_atom_sites.entry_id                     7DXA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 15 SQD a 1 401 401 SQD SQD . 
P 16 CLA a 1 402 402 CLA CLA . 
Q 16 CLA a 1 403 403 CLA CLA . 
R 17 PHO a 1 404 404 PHO PHO . 
S 17 PHO a 1 405 405 PHO PHO . 
T 16 CLA a 1 406 406 CLA CLA . 
U 18 BCR a 1 407 407 BCR BCR . 
V 19 CL a 1 408 408 CL CL . 
W 20 MGE a 1 409 409 MGE MGE . 
X 16 CLA b 1 601 601 CLA CLA . 
Y 16 CLA b 1 602 602 CLA CLA . 
Z 16 CLA b 1 603 603 CLA CLA . 
AA 16 CLA b 1 604 604 CLA CLA . 
BA 16 CLA b 1 605 605 CLA CLA . 
CA 16 CLA b 1 606 606 CLA CLA . 
DA 16 CLA b 1 607 607 CLA CLA . 
EA 16 CLA b 1 608 608 CLA CLA . 
FA 16 CLA b 1 609 609 CLA CLA . 
GA 16 CLA b 1 610 610 CLA CLA . 
HA 16 CLA b 1 611 611 CLA CLA . 
IA 16 CLA b 1 612 612 CLA CLA . 
JA 16 CLA b 1 613 613 CLA CLA . 
KA 16 CLA b 1 614 614 CLA CLA . 
LA 16 CLA b 1 615 615 CLA CLA . 
MA 16 CLA b 1 616 616 CLA CLA . 
NA 18 BCR b 1 617 617 BCR BCR . 
OA 18 BCR b 1 618 618 BCR BCR . 
PA 18 BCR b 1 619 619 BCR BCR . 
QA 20 MGE b 1 620 620 MGE MGE . 
RA 21 UNL b 1 621 621 UNL UNL . 
SA 20 MGE b 1 622 622 MGE MGE . 
TA 22 LMT b 1 623 623 LMT LMT . 
UA 16 CLA d 1 401 401 CLA CLA . 
VA 22 LMT d 1 402 402 LMT LMT . 
WA 23 FE2 d 1 403 403 FE2 FE2 . 
XA 16 CLA d 1 404 404 CLA CLA . 
YA 16 CLA d 1 405 405 CLA CLA . 
ZA 24 PQ9 d 1 406 406 PQ9 PQ9 . 
AB 18 BCR d 1 407 407 BCR BCR . 
BB 20 MGE d 1 408 408 MGE MGE . 
CB 20 MGE d 1 409 409 MGE MGE . 
DB 20 MGE d 1 410 410 MGE MGE . 
EB 25 HTG d 1 411 411 HTG HTG . 
FB 26 DGD d 1 412 412 DGD DGD . 
GB 27 HEM e 1 101 101 HEM HEM . 
HB 18 BCR h 1 101 101 BCR BCR . 
IB 15 SQD l 1 101 101 SQD SQD . 
JB 20 MGE m 1 101 101 MGE MGE . 
KB 22 LMT t 1 101 101 LMT LMT . 
LB 21 UNL x 1 101 101 UNL UNL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HTG . . . EB 25 139.288 109.539 111.235 1 133.19 ? C1 HTG 411 d 1 
HETATM 2 S S1 HTG . . . EB 25 137.88 110.559 111.556 1 153.33 ? S1 HTG 411 d 1 
HETATM 3 C C2 HTG . . . EB 25 138.885 108.287 110.449 1 131 ? C2 HTG 411 d 1 
HETATM 4 O O2 HTG . . . EB 25 137.949 107.5 111.195 1 133.56 ? O2 HTG 411 d 1 
HETATM 5 C C3 HTG . . . EB 25 140.122 107.457 110.157 1 133.58 ? C3 HTG 411 d 1 
HETATM 6 O O3 HTG . . . EB 25 139.786 106.245 109.471 1 140.53 ? O3 HTG 411 d 1 
HETATM 7 C C4 HTG . . . EB 25 141.049 108.308 109.31 1 133.92 ? C4 HTG 411 d 1 
HETATM 8 O O4 HTG . . . EB 25 142.197 107.538 108.932 1 130.57 ? O4 HTG 411 d 1 
HETATM 9 C C5 HTG . . . EB 25 141.451 109.557 110.101 1 141.28 ? C5 HTG 411 d 1 
HETATM 10 O O5 HTG . . . EB 25 140.299 110.296 110.549 1 139.18 ? O5 HTG 411 d 1 
HETATM 11 C C6 HTG . . . EB 25 142.339 110.471 109.255 1 137.62 ? C6 HTG 411 d 1 
HETATM 12 O O6 HTG . . . EB 25 142.995 111.442 110.086 1 129.1 ? O6 HTG 411 d 1 
HETATM 13 C C1' HTG . . . EB 25 138.341 112.121 112.225 1 121.65 ? C1' HTG 411 d 1 
HETATM 14 C C2' HTG . . . EB 25 137.122 113.033 112.145 1 120.02 ? C2' HTG 411 d 1 
HETATM 15 C C3' HTG . . . EB 25 137.344 114.364 112.853 1 114.17 ? C3' HTG 411 d 1 
HETATM 16 C C4' HTG . . . EB 25 136.308 115.381 112.389 1 112.36 ? C4' HTG 411 d 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           16 
#