data_7DXA
#
_model_server_result.job_id            PSOB1WxYk2paVfL0lkswiQ 
_model_server_result.datetime_utc      '2024-11-21 14:24:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dxa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":601}' 
#
_entry.id    7DXA 
#
_exptl.entry_id    7DXA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              893.489 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHLOROPHYLL A' 
_entity.pdbx_number_of_molecules    22 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DXA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DXA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 P N N 
? 16 Q N N 
? 16 T N N 
? 16 X N N 
? 16 Y N N 
? 16 Z N N 
? 16 AA N N 
? 16 BA N N 
? 16 CA N N 
? 16 DA N N 
? 16 EA N N 
? 16 FA N N 
? 16 GA N N 
? 16 HA N N 
? 16 IA N N 
? 16 JA N N 
? 16 KA N N 
? 16 LA N N 
? 16 MA N N 
? 16 UA N N 
? 16 XA N N 
? 16 YA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NE2 HIS 215 a HIS 215 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc2 E NE2 HIS 204 d HIS 214 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? 
metalc ? metalc3 E OE1 GLU 231 d GLU 241 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? 
metalc ? metalc4 E NE2 HIS 258 d HIS 268 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
#
_chem_comp.formula           'C55 H72 Mg N4 O5' 
_chem_comp.formula_weight    893.489 
_chem_comp.id                CLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHLOROPHYLL A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
MG NA CLA sing 167 n n 
MG NB CLA sing 168 n n 
MG NC CLA sing 169 n n 
MG ND CLA sing 170 n n 
CHA C1A CLA sing 171 n n 
CHA C4D CLA doub 172 n n 
CHA CBD CLA sing 173 n n 
CHB C4A CLA doub 174 n n 
CHB C1B CLA sing 175 n n 
CHB HHB CLA sing 176 n n 
CHC C4B CLA sing 177 n n 
CHC C1C CLA doub 178 n n 
CHC HHC CLA sing 179 n n 
CHD C4C CLA sing 180 n n 
CHD C1D CLA doub 181 n n 
CHD HHD CLA sing 182 n n 
NA C1A CLA doub 183 n n 
NA C4A CLA sing 184 n n 
C1A C2A CLA sing 185 n n 
C2A C3A CLA sing 186 n n 
C2A CAA CLA sing 187 n n 
C2A H2A CLA sing 188 n n 
C3A C4A CLA sing 189 n n 
C3A CMA CLA sing 190 n n 
C3A H3A CLA sing 191 n n 
CMA HMA1 CLA sing 192 n n 
CMA HMA2 CLA sing 193 n n 
CMA HMA3 CLA sing 194 n n 
CAA CBA CLA sing 195 n n 
CAA HAA1 CLA sing 196 n n 
CAA HAA2 CLA sing 197 n n 
CBA CGA CLA sing 198 n n 
CBA HBA1 CLA sing 199 n n 
CBA HBA2 CLA sing 200 n n 
CGA O1A CLA doub 201 n n 
CGA O2A CLA sing 202 n n 
O2A C1 CLA sing 203 n n 
NB C1B CLA sing 204 n y 
NB C4B CLA sing 205 n y 
C1B C2B CLA doub 206 n y 
C2B C3B CLA sing 207 n y 
C2B CMB CLA sing 208 n n 
C3B C4B CLA doub 209 n y 
C3B CAB CLA sing 210 n n 
CMB HMB1 CLA sing 211 n n 
CMB HMB2 CLA sing 212 n n 
CMB HMB3 CLA sing 213 n n 
CAB CBB CLA doub 214 n n 
CAB HAB CLA sing 215 n n 
CBB HBB1 CLA sing 216 n n 
CBB HBB2 CLA sing 217 n n 
NC C1C CLA sing 218 n n 
NC C4C CLA doub 219 n n 
C1C C2C CLA sing 220 n n 
C2C C3C CLA doub 221 n n 
C2C CMC CLA sing 222 n n 
C3C C4C CLA sing 223 n n 
C3C CAC CLA sing 224 n n 
CMC HMC1 CLA sing 225 n n 
CMC HMC2 CLA sing 226 n n 
CMC HMC3 CLA sing 227 n n 
CAC CBC CLA sing 228 n n 
CAC HAC1 CLA sing 229 n n 
CAC HAC2 CLA sing 230 n n 
CBC HBC1 CLA sing 231 n n 
CBC HBC2 CLA sing 232 n n 
CBC HBC3 CLA sing 233 n n 
ND C1D CLA sing 234 n n 
ND C4D CLA sing 235 n n 
C1D C2D CLA sing 236 n n 
C2D C3D CLA doub 237 n n 
C2D CMD CLA sing 238 n n 
C3D C4D CLA sing 239 n n 
C3D CAD CLA sing 240 n n 
CMD HMD1 CLA sing 241 n n 
CMD HMD2 CLA sing 242 n n 
CMD HMD3 CLA sing 243 n n 
CAD OBD CLA doub 244 n n 
CAD CBD CLA sing 245 n n 
CBD CGD CLA sing 246 n n 
CBD HBD CLA sing 247 n n 
CGD O1D CLA doub 248 n n 
CGD O2D CLA sing 249 n n 
O2D CED CLA sing 250 n n 
CED HED1 CLA sing 251 n n 
CED HED2 CLA sing 252 n n 
CED HED3 CLA sing 253 n n 
C1 C2 CLA sing 254 n n 
C1 H11 CLA sing 255 n n 
C1 H12 CLA sing 256 n n 
C2 C3 CLA doub 257 e n 
C2 H2 CLA sing 258 n n 
C3 C4 CLA sing 259 n n 
C3 C5 CLA sing 260 n n 
C4 H41 CLA sing 261 n n 
C4 H42 CLA sing 262 n n 
C4 H43 CLA sing 263 n n 
C5 C6 CLA sing 264 n n 
C5 H51 CLA sing 265 n n 
C5 H52 CLA sing 266 n n 
C6 C7 CLA sing 267 n n 
C6 H61 CLA sing 268 n n 
C6 H62 CLA sing 269 n n 
C7 C8 CLA sing 270 n n 
C7 H71 CLA sing 271 n n 
C7 H72 CLA sing 272 n n 
C8 C9 CLA sing 273 n n 
C8 C10 CLA sing 274 n n 
C8 H8 CLA sing 275 n n 
C9 H91 CLA sing 276 n n 
C9 H92 CLA sing 277 n n 
C9 H93 CLA sing 278 n n 
C10 C11 CLA sing 279 n n 
C10 H101 CLA sing 280 n n 
C10 H102 CLA sing 281 n n 
C11 C12 CLA sing 282 n n 
C11 H111 CLA sing 283 n n 
C11 H112 CLA sing 284 n n 
C12 C13 CLA sing 285 n n 
C12 H121 CLA sing 286 n n 
C12 H122 CLA sing 287 n n 
C13 C14 CLA sing 288 n n 
C13 C15 CLA sing 289 n n 
C13 H13 CLA sing 290 n n 
C14 H141 CLA sing 291 n n 
C14 H142 CLA sing 292 n n 
C14 H143 CLA sing 293 n n 
C15 C16 CLA sing 294 n n 
C15 H151 CLA sing 295 n n 
C15 H152 CLA sing 296 n n 
C16 C17 CLA sing 297 n n 
C16 H161 CLA sing 298 n n 
C16 H162 CLA sing 299 n n 
C17 C18 CLA sing 300 n n 
C17 H171 CLA sing 301 n n 
C17 H172 CLA sing 302 n n 
C18 C19 CLA sing 303 n n 
C18 C20 CLA sing 304 n n 
C18 H18 CLA sing 305 n n 
C19 H191 CLA sing 306 n n 
C19 H192 CLA sing 307 n n 
C19 H193 CLA sing 308 n n 
C20 H201 CLA sing 309 n n 
C20 H202 CLA sing 310 n n 
C20 H203 CLA sing 311 n n 
#
_atom_sites.entry_id                     7DXA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 15 SQD a 1 401 401 SQD SQD . 
P 16 CLA a 1 402 402 CLA CLA . 
Q 16 CLA a 1 403 403 CLA CLA . 
R 17 PHO a 1 404 404 PHO PHO . 
S 17 PHO a 1 405 405 PHO PHO . 
T 16 CLA a 1 406 406 CLA CLA . 
U 18 BCR a 1 407 407 BCR BCR . 
V 19 CL a 1 408 408 CL CL . 
W 20 MGE a 1 409 409 MGE MGE . 
X 16 CLA b 1 601 601 CLA CLA . 
Y 16 CLA b 1 602 602 CLA CLA . 
Z 16 CLA b 1 603 603 CLA CLA . 
AA 16 CLA b 1 604 604 CLA CLA . 
BA 16 CLA b 1 605 605 CLA CLA . 
CA 16 CLA b 1 606 606 CLA CLA . 
DA 16 CLA b 1 607 607 CLA CLA . 
EA 16 CLA b 1 608 608 CLA CLA . 
FA 16 CLA b 1 609 609 CLA CLA . 
GA 16 CLA b 1 610 610 CLA CLA . 
HA 16 CLA b 1 611 611 CLA CLA . 
IA 16 CLA b 1 612 612 CLA CLA . 
JA 16 CLA b 1 613 613 CLA CLA . 
KA 16 CLA b 1 614 614 CLA CLA . 
LA 16 CLA b 1 615 615 CLA CLA . 
MA 16 CLA b 1 616 616 CLA CLA . 
NA 18 BCR b 1 617 617 BCR BCR . 
OA 18 BCR b 1 618 618 BCR BCR . 
PA 18 BCR b 1 619 619 BCR BCR . 
QA 20 MGE b 1 620 620 MGE MGE . 
RA 21 UNL b 1 621 621 UNL UNL . 
SA 20 MGE b 1 622 622 MGE MGE . 
TA 22 LMT b 1 623 623 LMT LMT . 
UA 16 CLA d 1 401 401 CLA CLA . 
VA 22 LMT d 1 402 402 LMT LMT . 
WA 23 FE2 d 1 403 403 FE2 FE2 . 
XA 16 CLA d 1 404 404 CLA CLA . 
YA 16 CLA d 1 405 405 CLA CLA . 
ZA 24 PQ9 d 1 406 406 PQ9 PQ9 . 
AB 18 BCR d 1 407 407 BCR BCR . 
BB 20 MGE d 1 408 408 MGE MGE . 
CB 20 MGE d 1 409 409 MGE MGE . 
DB 20 MGE d 1 410 410 MGE MGE . 
EB 25 HTG d 1 411 411 HTG HTG . 
FB 26 DGD d 1 412 412 DGD DGD . 
GB 27 HEM e 1 101 101 HEM HEM . 
HB 18 BCR h 1 101 101 BCR BCR . 
IB 15 SQD l 1 101 101 SQD SQD . 
JB 20 MGE m 1 101 101 MGE MGE . 
KB 22 LMT t 1 101 101 LMT LMT . 
LB 21 UNL x 1 101 101 UNL UNL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 MG MG CLA . . . X 16 107.876 111.606 115.275 1 34.05 ? MG CLA 601 b 1 
HETATM 2 C CHA CLA . . . X 16 111.237 112.349 115.185 1 34.05 ? CHA CLA 601 b 1 
HETATM 3 C CHB CLA . . . X 16 107.572 114.358 113.711 1 34.05 ? CHB CLA 601 b 1 
HETATM 4 C CHC CLA . . . X 16 105.906 110.022 112.75 1 34.05 ? CHC CLA 601 b 1 
HETATM 5 C CHD CLA . . . X 16 108.657 108.446 116.444 1 34.05 ? CHD CLA 601 b 1 
HETATM 6 N NA CLA . . . X 16 109.137 112.799 114.241 1 34.05 ? NA CLA 601 b 1 
HETATM 7 C C1A CLA . . . X 16 110.396 112.816 114.098 1 34.05 ? C1A CLA 601 b 1 
HETATM 8 C C2A CLA . . . X 16 110.872 113.425 112.817 1 34.05 ? C2A CLA 601 b 1 
HETATM 9 C C3A CLA . . . X 16 109.711 114.366 112.547 1 34.05 ? C3A CLA 601 b 1 
HETATM 10 C C4A CLA . . . X 16 108.758 113.869 113.569 1 34.05 ? C4A CLA 601 b 1 
HETATM 11 C CMA CLA . . . X 16 109.97 115.848 112.78 1 34.05 ? CMA CLA 601 b 1 
HETATM 12 C CAA CLA . . . X 16 111.056 112.362 111.734 1 34.05 ? CAA CLA 601 b 1 
HETATM 13 N NB CLA . . . X 16 106.919 112.09 113.503 1 34.05 ? NB CLA 601 b 1 
HETATM 14 C C1B CLA . . . X 16 106.831 113.341 113.015 1 34.05 ? C1B CLA 601 b 1 
HETATM 15 C C2B CLA . . . X 16 106.117 113.579 111.757 1 34.05 ? C2B CLA 601 b 1 
HETATM 16 C C3B CLA . . . X 16 105.639 112.23 111.505 1 34.05 ? C3B CLA 601 b 1 
HETATM 17 C C4B CLA . . . X 16 106.143 111.432 112.632 1 34.05 ? C4B CLA 601 b 1 
HETATM 18 C CMB CLA . . . X 16 105.933 114.855 110.994 1 34.05 ? CMB CLA 601 b 1 
HETATM 19 C CAB CLA . . . X 16 104.789 111.787 110.385 1 34.05 ? CAB CLA 601 b 1 
HETATM 20 C CBB CLA . . . X 16 103.536 111.457 110.634 1 34.05 ? CBB CLA 601 b 1 
HETATM 21 N NC CLA . . . X 16 107.411 109.658 114.69 1 34.05 ? NC CLA 601 b 1 
HETATM 22 C C1C CLA . . . X 16 106.623 109.192 113.696 1 34.05 ? C1C CLA 601 b 1 
HETATM 23 C C2C CLA . . . X 16 106.473 107.737 113.544 1 34.05 ? C2C CLA 601 b 1 
HETATM 24 C C3C CLA . . . X 16 107.283 107.217 114.646 1 34.05 ? C3C CLA 601 b 1 
HETATM 25 C C4C CLA . . . X 16 107.781 108.475 115.272 1 34.05 ? C4C CLA 601 b 1 
HETATM 26 C CMC CLA . . . X 16 105.662 107.029 112.488 1 34.05 ? CMC CLA 601 b 1 
HETATM 27 C CAC CLA . . . X 16 107.545 105.77 115.025 1 34.05 ? CAC CLA 601 b 1 
HETATM 28 C CBC CLA . . . X 16 106.334 105.069 115.61 1 34.05 ? CBC CLA 601 b 1 
HETATM 29 N ND CLA . . . X 16 109.582 110.468 115.393 1 34.05 ? ND CLA 601 b 1 
HETATM 30 C C1D CLA . . . X 16 109.691 109.459 116.454 1 34.05 ? C1D CLA 601 b 1 
HETATM 31 C C2D CLA . . . X 16 110.913 109.58 117.325 1 34.05 ? C2D CLA 601 b 1 
HETATM 32 C C3D CLA . . . X 16 111.5 110.775 116.745 1 34.05 ? C3D CLA 601 b 1 
HETATM 33 C C4D CLA . . . X 16 110.694 111.188 115.777 1 34.05 ? C4D CLA 601 b 1 
HETATM 34 C CMD CLA . . . X 16 111.594 108.889 118.473 1 34.05 ? CMD CLA 601 b 1 
HETATM 35 C CAD CLA . . . X 16 112.634 111.713 116.897 1 34.05 ? CAD CLA 601 b 1 
HETATM 36 O OBD CLA . . . X 16 113.585 111.597 117.743 1 34.05 ? OBD CLA 601 b 1 
HETATM 37 C CBD CLA . . . X 16 112.518 112.747 115.821 1 34.05 ? CBD CLA 601 b 1 
HETATM 38 C CGD CLA . . . X 16 112.599 114.169 116.244 1 34.05 ? CGD CLA 601 b 1 
HETATM 39 O O1D CLA . . . X 16 113.146 114.452 117.297 1 34.05 ? O1D CLA 601 b 1 
HETATM 40 O O2D CLA . . . X 16 112.094 115.203 115.349 1 34.05 ? O2D CLA 601 b 1 
HETATM 41 C CED CLA . . . X 16 112.913 116.316 115.011 1 34.05 ? CED CLA 601 b 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           41 
#