data_7DXA # _model_server_result.job_id CQMhgVwTJxbkyX65T4QNpg _model_server_result.datetime_utc '2024-11-21 13:52:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":614}' # _entry.id 7DXA # _exptl.entry_id 7DXA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 893.489 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLOROPHYLL A' _entity.pdbx_number_of_molecules 22 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DXA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 P N N ? 16 Q N N ? 16 T N N ? 16 X N N ? 16 Y N N ? 16 Z N N ? 16 AA N N ? 16 BA N N ? 16 CA N N ? 16 DA N N ? 16 EA N N ? 16 FA N N ? 16 GA N N ? 16 HA N N ? 16 IA N N ? 16 JA N N ? 16 KA N N ? 16 LA N N ? 16 MA N N ? 16 UA N N ? 16 XA N N ? 16 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C NE2 HIS 215 a HIS 215 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 E NE2 HIS 204 d HIS 214 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? metalc ? metalc3 E OE1 GLU 231 d GLU 241 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? metalc ? metalc4 E NE2 HIS 258 d HIS 268 1_555 WA FE FE2 . d FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? # _chem_comp.formula 'C55 H72 Mg N4 O5' _chem_comp.formula_weight 893.489 _chem_comp.id CLA _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA CLA sing 167 n n MG NB CLA sing 168 n n MG NC CLA sing 169 n n MG ND CLA sing 170 n n CHA C1A CLA sing 171 n n CHA C4D CLA doub 172 n n CHA CBD CLA sing 173 n n CHB C4A CLA doub 174 n n CHB C1B CLA sing 175 n n CHB HHB CLA sing 176 n n CHC C4B CLA sing 177 n n CHC C1C CLA doub 178 n n CHC HHC CLA sing 179 n n CHD C4C CLA sing 180 n n CHD C1D CLA doub 181 n n CHD HHD CLA sing 182 n n NA C1A CLA doub 183 n n NA C4A CLA sing 184 n n C1A C2A CLA sing 185 n n C2A C3A CLA sing 186 n n C2A CAA CLA sing 187 n n C2A H2A CLA sing 188 n n C3A C4A CLA sing 189 n n C3A CMA CLA sing 190 n n C3A H3A CLA sing 191 n n CMA HMA1 CLA sing 192 n n CMA HMA2 CLA sing 193 n n CMA HMA3 CLA sing 194 n n CAA CBA CLA sing 195 n n CAA HAA1 CLA sing 196 n n CAA HAA2 CLA sing 197 n n CBA CGA CLA sing 198 n n CBA HBA1 CLA sing 199 n n CBA HBA2 CLA sing 200 n n CGA O1A CLA doub 201 n n CGA O2A CLA sing 202 n n O2A C1 CLA sing 203 n n NB C1B CLA sing 204 n y NB C4B CLA sing 205 n y C1B C2B CLA doub 206 n y C2B C3B CLA sing 207 n y C2B CMB CLA sing 208 n n C3B C4B CLA doub 209 n y C3B CAB CLA sing 210 n n CMB HMB1 CLA sing 211 n n CMB HMB2 CLA sing 212 n n CMB HMB3 CLA sing 213 n n CAB CBB CLA doub 214 n n CAB HAB CLA sing 215 n n CBB HBB1 CLA sing 216 n n CBB HBB2 CLA sing 217 n n NC C1C CLA sing 218 n n NC C4C CLA doub 219 n n C1C C2C CLA sing 220 n n C2C C3C CLA doub 221 n n C2C CMC CLA sing 222 n n C3C C4C CLA sing 223 n n C3C CAC CLA sing 224 n n CMC HMC1 CLA sing 225 n n CMC HMC2 CLA sing 226 n n CMC HMC3 CLA sing 227 n n CAC CBC CLA sing 228 n n CAC HAC1 CLA sing 229 n n CAC HAC2 CLA sing 230 n n CBC HBC1 CLA sing 231 n n CBC HBC2 CLA sing 232 n n CBC HBC3 CLA sing 233 n n ND C1D CLA sing 234 n n ND C4D CLA sing 235 n n C1D C2D CLA sing 236 n n C2D C3D CLA doub 237 n n C2D CMD CLA sing 238 n n C3D C4D CLA sing 239 n n C3D CAD CLA sing 240 n n CMD HMD1 CLA sing 241 n n CMD HMD2 CLA sing 242 n n CMD HMD3 CLA sing 243 n n CAD OBD CLA doub 244 n n CAD CBD CLA sing 245 n n CBD CGD CLA sing 246 n n CBD HBD CLA sing 247 n n CGD O1D CLA doub 248 n n CGD O2D CLA sing 249 n n O2D CED CLA sing 250 n n CED HED1 CLA sing 251 n n CED HED2 CLA sing 252 n n CED HED3 CLA sing 253 n n C1 C2 CLA sing 254 n n C1 H11 CLA sing 255 n n C1 H12 CLA sing 256 n n C2 C3 CLA doub 257 e n C2 H2 CLA sing 258 n n C3 C4 CLA sing 259 n n C3 C5 CLA sing 260 n n C4 H41 CLA sing 261 n n C4 H42 CLA sing 262 n n C4 H43 CLA sing 263 n n C5 C6 CLA sing 264 n n C5 H51 CLA sing 265 n n C5 H52 CLA sing 266 n n C6 C7 CLA sing 267 n n C6 H61 CLA sing 268 n n C6 H62 CLA sing 269 n n C7 C8 CLA sing 270 n n C7 H71 CLA sing 271 n n C7 H72 CLA sing 272 n n C8 C9 CLA sing 273 n n C8 C10 CLA sing 274 n n C8 H8 CLA sing 275 n n C9 H91 CLA sing 276 n n C9 H92 CLA sing 277 n n C9 H93 CLA sing 278 n n C10 C11 CLA sing 279 n n C10 H101 CLA sing 280 n n C10 H102 CLA sing 281 n n C11 C12 CLA sing 282 n n C11 H111 CLA sing 283 n n C11 H112 CLA sing 284 n n C12 C13 CLA sing 285 n n C12 H121 CLA sing 286 n n C12 H122 CLA sing 287 n n C13 C14 CLA sing 288 n n C13 C15 CLA sing 289 n n C13 H13 CLA sing 290 n n C14 H141 CLA sing 291 n n C14 H142 CLA sing 292 n n C14 H143 CLA sing 293 n n C15 C16 CLA sing 294 n n C15 H151 CLA sing 295 n n C15 H152 CLA sing 296 n n C16 C17 CLA sing 297 n n C16 H161 CLA sing 298 n n C16 H162 CLA sing 299 n n C17 C18 CLA sing 300 n n C17 H171 CLA sing 301 n n C17 H172 CLA sing 302 n n C18 C19 CLA sing 303 n n C18 C20 CLA sing 304 n n C18 H18 CLA sing 305 n n C19 H191 CLA sing 306 n n C19 H192 CLA sing 307 n n C19 H193 CLA sing 308 n n C20 H201 CLA sing 309 n n C20 H202 CLA sing 310 n n C20 H203 CLA sing 311 n n # _atom_sites.entry_id 7DXA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 15 SQD a 1 401 401 SQD SQD . P 16 CLA a 1 402 402 CLA CLA . Q 16 CLA a 1 403 403 CLA CLA . R 17 PHO a 1 404 404 PHO PHO . S 17 PHO a 1 405 405 PHO PHO . T 16 CLA a 1 406 406 CLA CLA . U 18 BCR a 1 407 407 BCR BCR . V 19 CL a 1 408 408 CL CL . W 20 MGE a 1 409 409 MGE MGE . X 16 CLA b 1 601 601 CLA CLA . Y 16 CLA b 1 602 602 CLA CLA . Z 16 CLA b 1 603 603 CLA CLA . AA 16 CLA b 1 604 604 CLA CLA . BA 16 CLA b 1 605 605 CLA CLA . CA 16 CLA b 1 606 606 CLA CLA . DA 16 CLA b 1 607 607 CLA CLA . EA 16 CLA b 1 608 608 CLA CLA . FA 16 CLA b 1 609 609 CLA CLA . GA 16 CLA b 1 610 610 CLA CLA . HA 16 CLA b 1 611 611 CLA CLA . IA 16 CLA b 1 612 612 CLA CLA . JA 16 CLA b 1 613 613 CLA CLA . KA 16 CLA b 1 614 614 CLA CLA . LA 16 CLA b 1 615 615 CLA CLA . MA 16 CLA b 1 616 616 CLA CLA . NA 18 BCR b 1 617 617 BCR BCR . OA 18 BCR b 1 618 618 BCR BCR . PA 18 BCR b 1 619 619 BCR BCR . QA 20 MGE b 1 620 620 MGE MGE . RA 21 UNL b 1 621 621 UNL UNL . SA 20 MGE b 1 622 622 MGE MGE . TA 22 LMT b 1 623 623 LMT LMT . UA 16 CLA d 1 401 401 CLA CLA . VA 22 LMT d 1 402 402 LMT LMT . WA 23 FE2 d 1 403 403 FE2 FE2 . XA 16 CLA d 1 404 404 CLA CLA . YA 16 CLA d 1 405 405 CLA CLA . ZA 24 PQ9 d 1 406 406 PQ9 PQ9 . AB 18 BCR d 1 407 407 BCR BCR . BB 20 MGE d 1 408 408 MGE MGE . CB 20 MGE d 1 409 409 MGE MGE . DB 20 MGE d 1 410 410 MGE MGE . EB 25 HTG d 1 411 411 HTG HTG . FB 26 DGD d 1 412 412 DGD DGD . GB 27 HEM e 1 101 101 HEM HEM . HB 18 BCR h 1 101 101 BCR BCR . IB 15 SQD l 1 101 101 SQD SQD . JB 20 MGE m 1 101 101 MGE MGE . KB 22 LMT t 1 101 101 LMT LMT . LB 21 UNL x 1 101 101 UNL UNL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG CLA . . . KA 16 134.451 124.353 152.561 1 27.27 ? MG CLA 614 b 1 HETATM 2 C CHA CLA . . . KA 16 137.41 123.249 154.326 1 24.57 ? CHA CLA 614 b 1 HETATM 3 C CHB CLA . . . KA 16 133.386 121.141 152.642 1 24.72 ? CHB CLA 614 b 1 HETATM 4 C CHC CLA . . . KA 16 131.181 125.498 151.764 1 24.06 ? CHC CLA 614 b 1 HETATM 5 C CHD CLA . . . KA 16 135.334 127.69 153.393 1 24.24 ? CHD CLA 614 b 1 HETATM 6 N NA CLA . . . KA 16 135.326 122.479 153.273 1 25 ? NA CLA 614 b 1 HETATM 7 C C1A CLA . . . KA 16 136.44 122.25 153.841 1 25.2 ? C1A CLA 614 b 1 HETATM 8 C C2A CLA . . . KA 16 136.658 120.785 154.138 1 25.8 ? C2A CLA 614 b 1 HETATM 9 C C3A CLA . . . KA 16 135.536 120.142 153.322 1 26.8 ? C3A CLA 614 b 1 HETATM 10 C C4A CLA . . . KA 16 134.672 121.325 153.032 1 25.47 ? C4A CLA 614 b 1 HETATM 11 C CMA CLA . . . KA 16 136.084 119.535 152.024 1 29.21 ? CMA CLA 614 b 1 HETATM 12 C CAA CLA . . . KA 16 136.528 120.502 155.639 1 25.44 ? CAA CLA 614 b 1 HETATM 13 C CBA CLA . . . KA 16 135.249 121.058 156.337 1 30.6 ? CBA CLA 614 b 1 HETATM 14 C CGA CLA . . . KA 16 135.447 122.511 156.832 1 32.17 ? CGA CLA 614 b 1 HETATM 15 O O1A CLA . . . KA 16 136.421 122.935 157.448 1 32.64 ? O1A CLA 614 b 1 HETATM 16 O O2A CLA . . . KA 16 134.449 123.526 156.519 1 37.23 ? O2A CLA 614 b 1 HETATM 17 N NB CLA . . . KA 16 132.618 123.472 152.312 1 25.48 ? NB CLA 614 b 1 HETATM 18 C C1B CLA . . . KA 16 132.364 122.148 152.262 1 24.6 ? C1B CLA 614 b 1 HETATM 19 C C2B CLA . . . KA 16 131.021 121.819 151.82 1 24.7 ? C2B CLA 614 b 1 HETATM 20 C C3B CLA . . . KA 16 130.429 123.11 151.546 1 23.66 ? C3B CLA 614 b 1 HETATM 21 C C4B CLA . . . KA 16 131.483 124.06 151.895 1 25.29 ? C4B CLA 614 b 1 HETATM 22 C CMB CLA . . . KA 16 130.35 120.476 151.627 1 23.33 ? CMB CLA 614 b 1 HETATM 23 C CAB CLA . . . KA 16 129.071 123.503 151.065 1 24.52 ? CAB CLA 614 b 1 HETATM 24 C CBB CLA . . . KA 16 128.383 122.639 150.264 1 24.69 ? CBB CLA 614 b 1 HETATM 25 N NC CLA . . . KA 16 133.414 126.202 152.577 1 24.43 ? NC CLA 614 b 1 HETATM 26 C C1C CLA . . . KA 16 132.146 126.487 152.219 1 22.17 ? C1C CLA 614 b 1 HETATM 27 C C2C CLA . . . KA 16 131.801 127.921 152.29 1 23 ? C2C CLA 614 b 1 HETATM 28 C C3C CLA . . . KA 16 133.014 128.528 152.767 1 20.27 ? C3C CLA 614 b 1 HETATM 29 C C4C CLA . . . KA 16 133.956 127.395 152.95 1 23.91 ? C4C CLA 614 b 1 HETATM 30 C CMC CLA . . . KA 16 130.474 128.52 151.944 1 22.41 ? CMC CLA 614 b 1 HETATM 31 C CAC CLA . . . KA 16 133.228 130.026 153.084 1 20.62 ? CAC CLA 614 b 1 HETATM 32 C CBC CLA . . . KA 16 132.673 130.219 154.515 1 23.12 ? CBC CLA 614 b 1 HETATM 33 N ND CLA . . . KA 16 135.866 125.294 153.597 1 23.75 ? ND CLA 614 b 1 HETATM 34 C C1D CLA . . . KA 16 136.21 126.586 153.818 1 23.49 ? C1D CLA 614 b 1 HETATM 35 C C2D CLA . . . KA 16 137.462 126.823 154.5 1 24.65 ? C2D CLA 614 b 1 HETATM 36 C C3D CLA . . . KA 16 137.92 125.467 154.68 1 25.21 ? C3D CLA 614 b 1 HETATM 37 C C4D CLA . . . KA 16 136.949 124.621 154.141 1 25 ? C4D CLA 614 b 1 HETATM 38 C CMD CLA . . . KA 16 138.155 128.119 154.913 1 21.86 ? CMD CLA 614 b 1 HETATM 39 C CAD CLA . . . KA 16 139.007 124.681 155.3 1 27.03 ? CAD CLA 614 b 1 HETATM 40 O OBD CLA . . . KA 16 140.007 125.158 155.893 1 25.55 ? OBD CLA 614 b 1 HETATM 41 C CBD CLA . . . KA 16 138.694 123.24 155.115 1 27.08 ? CBD CLA 614 b 1 HETATM 42 C CGD CLA . . . KA 16 139.8 122.522 154.379 1 27.88 ? CGD CLA 614 b 1 HETATM 43 O O1D CLA . . . KA 16 139.725 121.31 154.127 1 38.11 ? O1D CLA 614 b 1 HETATM 44 O O2D CLA . . . KA 16 140.802 123.215 153.642 1 31.2 ? O2D CLA 614 b 1 HETATM 45 C CED CLA . . . KA 16 141.967 122.524 153.089 1 27.51 ? CED CLA 614 b 1 HETATM 46 C C1 CLA . . . KA 16 134.505 124.886 156.997 1 36.82 ? C1 CLA 614 b 1 HETATM 47 C C2 CLA . . . KA 16 133.187 125.23 157.724 1 46.49 ? C2 CLA 614 b 1 HETATM 48 C C3 CLA . . . KA 16 132.297 126.016 157.09 1 45.06 ? C3 CLA 614 b 1 HETATM 49 C C4 CLA . . . KA 16 132.71 126.472 155.742 1 42.67 ? C4 CLA 614 b 1 HETATM 50 C C5 CLA . . . KA 16 130.979 126.474 157.673 1 52 ? C5 CLA 614 b 1 HETATM 51 C C6 CLA . . . KA 16 130.213 127.264 156.594 1 60.28 ? C6 CLA 614 b 1 HETATM 52 C C7 CLA . . . KA 16 129.6 128.615 156.991 1 67.77 ? C7 CLA 614 b 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 52 #