data_7DXG # _model_server_result.job_id lltgTDQjfAFHp44ltNn4OA _model_server_result.datetime_utc '2024-12-28 20:01:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dxg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":1005}' # _entry.id 7DXG # _exptl.entry_id 7DXG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 367.872 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[[(1R,2R)-2-[(3R)-3-azanylpiperidin-1-yl]-2,3-dihydro-1H-inden-1-yl]oxy]-3-chloranyl-benzenecarbonitrile _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 S N N ? 5 EA N N ? 5 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 144 A GLU 144 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc2 A OE1 GLU 144 A GLU 144 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc3 A ND1 HIS 249 A HIS 249 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 A SG CYS 255 A CYS 255 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc5 A SG CYS 258 A CYS 258 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 A O GLU 878 A GLU 878 1_555 I CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? metalc ? metalc7 A OE1 GLU 881 A GLU 881 1_555 FA CA CA . C CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc8 A OE1 GLU 883 A GLU 883 1_555 I CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc9 A OE2 GLU 883 A GLU 883 1_555 I CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.164 ? metalc ? metalc10 A OD1 ASP 890 A ASP 890 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc11 I CA CA . A CA 1005 1_555 D OE1 GLU 881 D GLU 881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc12 B O GLU 144 B GLU 144 1_555 Q CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc13 B OE1 GLU 144 B GLU 144 1_555 Q CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc14 B ND1 HIS 249 B HIS 249 1_555 P ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc15 B SG CYS 255 B CYS 255 1_555 P ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc16 B SG CYS 258 B CYS 258 1_555 P ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc17 B O GLU 878 B GLU 878 1_555 T CA CA . B CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.184 ? metalc ? metalc18 B OE1 GLU 881 B GLU 881 1_555 OA CA CA . D CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc19 B OE1 GLU 883 B GLU 883 1_555 T CA CA . B CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc20 B OE2 GLU 883 B GLU 883 1_555 T CA CA . B CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.165 ? metalc ? metalc21 B OD1 ASP 890 B ASP 890 1_555 Q CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc22 T CA CA . B CA 1005 1_555 C OE1 GLU 881 C GLU 881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc23 C O GLU 144 C GLU 144 1_555 CA CA CA . C CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc24 C OE1 GLU 144 C GLU 144 1_555 CA CA CA . C CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc25 C ND1 HIS 249 C HIS 249 1_555 BA ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc26 C SG CYS 255 C CYS 255 1_555 BA ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc27 C SG CYS 258 C CYS 258 1_555 BA ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc28 C O GLU 878 C GLU 878 1_555 FA CA CA . C CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? metalc ? metalc29 C OE1 GLU 883 C GLU 883 1_555 FA CA CA . C CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc30 C OE2 GLU 883 C GLU 883 1_555 FA CA CA . C CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.164 ? metalc ? metalc31 C OD1 ASP 890 C ASP 890 1_555 CA CA CA . C CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc32 D O GLU 144 D GLU 144 1_555 LA CA CA . D CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc33 D OE1 GLU 144 D GLU 144 1_555 LA CA CA . D CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc34 D ND1 HIS 249 D HIS 249 1_555 KA ZN ZN . D ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc35 D SG CYS 255 D CYS 255 1_555 KA ZN ZN . D ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc36 D SG CYS 258 D CYS 258 1_555 KA ZN ZN . D ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc37 D O GLU 878 D GLU 878 1_555 OA CA CA . D CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.184 ? metalc ? metalc38 D OE1 GLU 883 D GLU 883 1_555 OA CA CA . D CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc39 D OE2 GLU 883 D GLU 883 1_555 OA CA CA . D CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.165 ? metalc ? metalc40 D OD1 ASP 890 D ASP 890 1_555 LA CA CA . D CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? # _chem_comp.formula 'C21 H22 Cl N3 O' _chem_comp.formula_weight 367.872 _chem_comp.id HOR _chem_comp.mon_nstd_flag . _chem_comp.name 4-[[(1R,2R)-2-[(3R)-3-azanylpiperidin-1-yl]-2,3-dihydro-1H-inden-1-yl]oxy]-3-chloranyl-benzenecarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SAR7334 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C20 HOR trip 265 n n C20 C19 HOR sing 266 n n C17 C19 HOR doub 267 n y C17 C15 HOR sing 268 n y CL C15 HOR sing 269 n n C19 C18 HOR sing 270 n y C15 C14 HOR doub 271 n y C18 C16 HOR doub 272 n y C14 C16 HOR sing 273 n y C14 O HOR sing 274 n n O C1 HOR sing 275 n n C4 C6 HOR sing 276 n n C4 N HOR sing 277 n n C1 C7 HOR sing 278 n n C1 C HOR sing 279 n n C10 C7 HOR doub 280 n y C10 C12 HOR sing 281 n y C6 C8 HOR sing 282 n n C8 C5 HOR sing 283 n n C7 C9 HOR sing 284 n y C N HOR sing 285 n n C C2 HOR sing 286 n n C12 C13 HOR doub 287 n y N C3 HOR sing 288 n n C3 C5 HOR sing 289 n n N1 C5 HOR sing 290 n n C9 C2 HOR sing 291 n n C9 C11 HOR doub 292 n y C13 C11 HOR sing 293 n y C H2 HOR sing 294 n n C1 H3 HOR sing 295 n n C10 H4 HOR sing 296 n n C11 H5 HOR sing 297 n n C12 H6 HOR sing 298 n n C13 H7 HOR sing 299 n n C16 H8 HOR sing 300 n n C17 H9 HOR sing 301 n n C18 H10 HOR sing 302 n n C2 H11 HOR sing 303 n n C2 H12 HOR sing 304 n n C3 H13 HOR sing 305 n n C3 H14 HOR sing 306 n n C4 H15 HOR sing 307 n n C4 H16 HOR sing 308 n n C5 H17 HOR sing 309 n n C6 H18 HOR sing 310 n n C6 H19 HOR sing 311 n n C8 H20 HOR sing 312 n n C8 H21 HOR sing 313 n n N1 H22 HOR sing 314 n n N1 H23 HOR sing 315 n n # _atom_sites.entry_id 7DXG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 1001 1000 ZN ZN . F 3 CA A 1 1002 1001 CA CA . G 4 Y01 A 1 1003 1002 Y01 Y01 . H 5 HOR A 1 1004 1003 HOR SAR . I 3 CA A 1 1005 1004 CA CA . J 4 Y01 A 1 1006 1005 Y01 Y01 . K 6 POV A 1 1007 1011 POV POV . L 4 Y01 A 1 1008 1012 Y01 Y01 . M 7 98R A 1 1009 1101 98R DAX . N 4 Y01 A 1 1010 1013 Y01 Y01 . O 7 98R A 1 1011 1101 98R DAX . P 2 ZN B 1 1001 1000 ZN ZN . Q 3 CA B 1 1002 1001 CA CA . R 4 Y01 B 1 1003 1002 Y01 Y01 . S 5 HOR B 1 1004 1003 HOR SAR . T 3 CA B 1 1005 1004 CA CA . U 4 Y01 B 1 1006 1005 Y01 Y01 . V 6 POV B 1 1007 1011 POV POV . W 4 Y01 B 1 1008 1012 Y01 Y01 . X 7 98R B 1 1009 1101 98R DAX . Y 4 Y01 B 1 1010 1013 Y01 Y01 . Z 7 98R B 1 1011 1101 98R DAX . AA 4 Y01 C 1 1001 1013 Y01 Y01 . BA 2 ZN C 1 1002 1000 ZN ZN . CA 3 CA C 1 1003 1001 CA CA . DA 4 Y01 C 1 1004 1002 Y01 Y01 . EA 5 HOR C 1 1005 1003 HOR SAR . FA 3 CA C 1 1006 1004 CA CA . GA 4 Y01 C 1 1007 1005 Y01 Y01 . HA 6 POV C 1 1008 1011 POV POV . IA 4 Y01 C 1 1009 1012 Y01 Y01 . JA 4 Y01 D 1 1001 1013 Y01 Y01 . KA 2 ZN D 1 1002 1000 ZN ZN . LA 3 CA D 1 1003 1001 CA CA . MA 4 Y01 D 1 1004 1002 Y01 Y01 . NA 5 HOR D 1 1005 1003 HOR SAR . OA 3 CA D 1 1006 1004 CA CA . PA 4 Y01 D 1 1007 1005 Y01 Y01 . QA 6 POV D 1 1008 1011 POV POV . RA 4 Y01 D 1 1009 1012 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HOR . . . NA 5 182.201 138.141 154.925 1 112.52 ? N HOR 1005 D 1 HETATM 2 C C HOR . . . NA 5 181.13 137.214 154.519 1 109.96 ? C HOR 1005 D 1 HETATM 3 O O HOR . . . NA 5 181.624 135.912 152.549 1 115.75 ? O HOR 1005 D 1 HETATM 4 C C1 HOR . . . NA 5 181.646 135.871 153.973 1 107.66 ? C1 HOR 1005 D 1 HETATM 5 C C10 HOR . . . NA 5 180.48 133.586 154.122 1 99.16 ? C10 HOR 1005 D 1 HETATM 6 C C11 HOR . . . NA 5 178.755 134.816 156.065 1 97.29 ? C11 HOR 1005 D 1 HETATM 7 C C12 HOR . . . NA 5 179.449 132.883 154.745 1 98.3 ? C12 HOR 1005 D 1 HETATM 8 C C13 HOR . . . NA 5 178.61 133.481 155.691 1 97.29 ? C13 HOR 1005 D 1 HETATM 9 C C14 HOR . . . NA 5 182.569 135.287 151.781 1 104.58 ? C14 HOR 1005 D 1 HETATM 10 C C15 HOR . . . NA 5 182.747 135.698 150.371 1 106.22 ? C15 HOR 1005 D 1 HETATM 11 C C16 HOR . . . NA 5 183.357 134.269 152.296 1 97.76 ? C16 HOR 1005 D 1 HETATM 12 C C17 HOR . . . NA 5 183.701 135.057 149.599 1 103.95 ? C17 HOR 1005 D 1 HETATM 13 C C18 HOR . . . NA 5 184.307 133.651 151.477 1 101.26 ? C18 HOR 1005 D 1 HETATM 14 C C19 HOR . . . NA 5 184.472 134.044 150.143 1 104.43 ? C19 HOR 1005 D 1 HETATM 15 C C2 HOR . . . NA 5 180.142 136.976 155.675 1 107.75 ? C2 HOR 1005 D 1 HETATM 16 C C20 HOR . . . NA 5 185.356 133.467 149.411 1 105.68 ? C20 HOR 1005 D 1 HETATM 17 C C3 HOR . . . NA 5 181.614 139.49 154.969 1 117.04 ? C3 HOR 1005 D 1 HETATM 18 C C4 HOR . . . NA 5 183.312 138.106 153.961 1 112.14 ? C4 HOR 1005 D 1 HETATM 19 C C5 HOR . . . NA 5 182.64 140.532 155.396 1 122.93 ? C5 HOR 1005 D 1 HETATM 20 C C6 HOR . . . NA 5 184.397 139.094 154.369 1 118.31 ? C6 HOR 1005 D 1 HETATM 21 C C7 HOR . . . NA 5 180.649 134.913 154.476 1 102.05 ? C7 HOR 1005 D 1 HETATM 22 C C8 HOR . . . NA 5 183.822 140.501 154.438 1 122.47 ? C8 HOR 1005 D 1 HETATM 23 C C9 HOR . . . NA 5 179.773 135.535 155.463 1 98.75 ? C9 HOR 1005 D 1 HETATM 24 N N1 HOR . . . NA 5 182.016 141.868 155.358 1 127.57 ? N1 HOR 1005 D 1 HETATM 25 N N2 HOR . . . NA 5 186.153 132.946 148.749 1 107.19 ? N2 HOR 1005 D 1 HETATM 26 CL CL HOR . . . NA 5 181.723 137.017 149.706 1 135.34 ? CL HOR 1005 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #