data_7DYJ
#
_model_server_result.job_id            LBheOPgEcx3ZoEsf0AS-Sw 
_model_server_result.datetime_utc      '2024-11-17 02:43:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dyj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":604}' 
#
_entry.id    7DYJ 
#
_exptl.entry_id    7DYJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7DYJ 
_cell.length_a            94.582 
_cell.length_b            94.582 
_cell.length_c            179.858 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DYJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -47.291 -81.910415 0 
3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 47.291 -81.910415 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 53 A THR 53 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc2 A OG1 THR 295 A THR 295 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc3 C O3G ATP . A ATP 601 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? 
metalc ? metalc4 C O2B ATP . A ATP 601 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc5 D O1G ATP . A ATP 602 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
metalc ? metalc6 D O2B ATP . A ATP 602 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? 
metalc ? metalc7 D O3B ATP . A ATP 602 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? 
metalc ? metalc8 E MG MG . A MG 603 1_555 K O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc9 E MG MG . A MG 603 1_555 K O HOH . A HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc10 E MG MG . A MG 603 1_555 K O HOH . A HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc11 F MG MG . A MG 604 1_555 K O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc12 F MG MG . A MG 604 1_555 K O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc13 F MG MG . A MG 604 1_555 K O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc14 B OG1 THR 53 B THR 53 1_555 I MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc15 B OG1 THR 295 B THR 295 1_555 J MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc16 G O2G ATP . B ATP 601 1_555 I MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc17 G O2B ATP . B ATP 601 1_555 I MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc18 G O3B ATP . B ATP 601 1_555 I MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc19 H O3G ATP . B ATP 602 1_555 J MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? 
metalc ? metalc20 H O2B ATP . B ATP 602 1_555 J MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? 
metalc ? metalc21 I MG MG . B MG 603 1_555 L O HOH . B HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? 
metalc ? metalc22 I MG MG . B MG 603 1_555 L O HOH . B HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc23 I MG MG . B MG 603 1_555 L O HOH . B HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc24 J MG MG . B MG 604 1_555 L O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
metalc ? metalc25 J MG MG . B MG 604 1_555 L O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc26 J MG MG . B MG 604 1_555 L O HOH . B HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7DYJ 
_atom_sites.fract_transf_matrix[1][1]    0.010573 
_atom_sites.fract_transf_matrix[1][2]    0.006104 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012208 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00556 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ATP A 1 601 501 ATP ATP . 
D 2 ATP A 1 602 601 ATP ATP . 
E 3 MG A 1 603 1 MG MG . 
F 3 MG A 1 604 2 MG MG . 
G 2 ATP B 1 601 501 ATP ATP . 
H 2 ATP B 1 602 601 ATP ATP . 
I 3 MG B 1 603 3 MG MG . 
J 3 MG B 1 604 4 MG MG . 
K 4 HOH A 1 701 65 HOH HOH . 
K 4 HOH A 2 702 77 HOH HOH . 
K 4 HOH A 3 703 74 HOH HOH . 
K 4 HOH A 4 704 64 HOH HOH . 
K 4 HOH A 5 705 11 HOH HOH . 
K 4 HOH A 6 706 58 HOH HOH . 
K 4 HOH A 7 707 76 HOH HOH . 
K 4 HOH A 8 708 1 HOH HOH . 
K 4 HOH A 9 709 56 HOH HOH . 
K 4 HOH A 10 710 70 HOH HOH . 
K 4 HOH A 11 711 86 HOH HOH . 
K 4 HOH A 12 712 63 HOH HOH . 
K 4 HOH A 13 713 73 HOH HOH . 
K 4 HOH A 14 714 15 HOH HOH . 
K 4 HOH A 15 715 27 HOH HOH . 
K 4 HOH A 16 716 23 HOH HOH . 
K 4 HOH A 17 717 9 HOH HOH . 
K 4 HOH A 18 718 6 HOH HOH . 
K 4 HOH A 19 719 88 HOH HOH . 
K 4 HOH A 20 720 71 HOH HOH . 
K 4 HOH A 21 721 45 HOH HOH . 
K 4 HOH A 22 722 2 HOH HOH . 
K 4 HOH A 23 723 82 HOH HOH . 
K 4 HOH A 24 724 30 HOH HOH . 
K 4 HOH A 25 725 42 HOH HOH . 
K 4 HOH A 26 726 84 HOH HOH . 
K 4 HOH A 27 727 57 HOH HOH . 
K 4 HOH A 28 728 59 HOH HOH . 
K 4 HOH A 29 729 75 HOH HOH . 
K 4 HOH A 30 730 53 HOH HOH . 
L 4 HOH B 1 701 68 HOH HOH . 
L 4 HOH B 2 702 79 HOH HOH . 
L 4 HOH B 3 703 67 HOH HOH . 
L 4 HOH B 4 704 81 HOH HOH . 
L 4 HOH B 5 705 61 HOH HOH . 
L 4 HOH B 6 706 85 HOH HOH . 
L 4 HOH B 7 707 5 HOH HOH . 
L 4 HOH B 8 708 20 HOH HOH . 
L 4 HOH B 9 709 25 HOH HOH . 
L 4 HOH B 10 710 66 HOH HOH . 
L 4 HOH B 11 711 4 HOH HOH . 
L 4 HOH B 12 712 19 HOH HOH . 
L 4 HOH B 13 713 78 HOH HOH . 
L 4 HOH B 14 714 8 HOH HOH . 
L 4 HOH B 15 715 60 HOH HOH . 
L 4 HOH B 16 716 72 HOH HOH . 
L 4 HOH B 17 717 31 HOH HOH . 
L 4 HOH B 18 718 44 HOH HOH . 
L 4 HOH B 19 719 83 HOH HOH . 
L 4 HOH B 20 720 87 HOH HOH . 
L 4 HOH B 21 721 62 HOH HOH . 
L 4 HOH B 22 722 13 HOH HOH . 
L 4 HOH B 23 723 39 HOH HOH . 
L 4 HOH B 24 724 55 HOH HOH . 
L 4 HOH B 25 725 80 HOH HOH . 
L 4 HOH B 26 726 54 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -8.04 
_atom_site.Cartn_y               -27.565 
_atom_site.Cartn_z               20.175 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        36.81 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           604 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#