data_7DYR
#
_model_server_result.job_id            VyUwqo_aN3C3r_gmQEV3pQ 
_model_server_result.datetime_utc      '2024-11-04 22:49:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dyr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":301}' 
#
_entry.id    7DYR 
#
_exptl.entry_id    7DYR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DYR 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DYR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                MAN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MAN sing 216 n n 
C1 O1 MAN sing 217 n n 
C1 O5 MAN sing 218 n n 
C1 H1 MAN sing 219 n n 
C2 C3 MAN sing 220 n n 
C2 O2 MAN sing 221 n n 
C2 H2 MAN sing 222 n n 
C3 C4 MAN sing 223 n n 
C3 O3 MAN sing 224 n n 
C3 H3 MAN sing 225 n n 
C4 C5 MAN sing 226 n n 
C4 O4 MAN sing 227 n n 
C4 H4 MAN sing 228 n n 
C5 C6 MAN sing 229 n n 
C5 O5 MAN sing 230 n n 
C5 H5 MAN sing 231 n n 
C6 O6 MAN sing 232 n n 
C6 H61 MAN sing 233 n n 
C6 H62 MAN sing 234 n n 
O1 HO1 MAN sing 235 n n 
O2 HO2 MAN sing 236 n n 
O3 HO3 MAN sing 237 n n 
O4 HO4 MAN sing 238 n n 
O6 HO6 MAN sing 239 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MAN a-D-mannopyranose 'COMMON NAME' GMML 1 
MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7DYR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 MAN Z 1 301 1 MAN MAN . 
K 4 MAN C 1 301 2 MAN MAN . 
L 4 MAN F 1 301 3 MAN MAN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MAN . . . L 4 238.674 196.538 212.935 1 98.77 ? C1 MAN 301 F 1 
HETATM 2 C C2 MAN . . . L 4 239.207 196.954 211.57 1 98.77 ? C2 MAN 301 F 1 
HETATM 3 C C3 MAN . . . L 4 238.924 198.416 211.313 1 98.77 ? C3 MAN 301 F 1 
HETATM 4 C C4 MAN . . . L 4 237.469 198.734 211.568 1 98.77 ? C4 MAN 301 F 1 
HETATM 5 C C5 MAN . . . L 4 237.11 198.334 212.978 1 98.77 ? C5 MAN 301 F 1 
HETATM 6 C C6 MAN . . . L 4 235.663 198.568 213.277 1 98.77 ? C6 MAN 301 F 1 
HETATM 7 O O1 MAN . . . L 4 239.554 197.083 213.915 1 98.77 ? O1 MAN 301 F 1 
HETATM 8 O O2 MAN . . . L 4 238.514 196.277 210.546 1 98.77 ? O2 MAN 301 F 1 
HETATM 9 O O3 MAN . . . L 4 239.249 198.757 209.99 1 98.77 ? O3 MAN 301 F 1 
HETATM 10 O O4 MAN . . . L 4 237.262 200.114 211.432 1 98.77 ? O4 MAN 301 F 1 
HETATM 11 O O5 MAN . . . L 4 237.354 196.931 213.129 1 98.77 ? O5 MAN 301 F 1 
HETATM 12 O O6 MAN . . . L 4 235.258 199.691 212.535 1 98.77 ? O6 MAN 301 F 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#