data_7DYT
#
_model_server_result.job_id            1CxSqFxlGbeIZoBy2OO2yQ 
_model_server_result.datetime_utc      '2025-02-26 21:46:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dyt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    7DYT 
#
_exptl.entry_id    7DYT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DYT 
_cell.length_a            49.35 
_cell.length_b            65 
_cell.length_c            78.61 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DYT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 140 A HIS 321 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc2 A OD2 ASP 142 A ASP 323 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc3 A NE2 HIS 219 A HIS 400 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc4 B MN MN . A MN 501 1_555 C O3 HR3 . A HR3 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc5 B MN MN . A MN 501 1_555 C N1 HR3 . A HR3 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc6 B MN MN . A MN 501 1_555 D O HOH . A HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7DYT 
_atom_sites.fract_transf_matrix[1][1]    0.020263 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015385 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012721 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 501 501 MN MN . 
C 3 HR3 A 1 502 1 HR3 LIG . 
D 4 HOH A 1 601 184 HOH HOH . 
D 4 HOH A 2 602 125 HOH HOH . 
D 4 HOH A 3 603 99 HOH HOH . 
D 4 HOH A 4 604 195 HOH HOH . 
D 4 HOH A 5 605 94 HOH HOH . 
D 4 HOH A 6 606 50 HOH HOH . 
D 4 HOH A 7 607 152 HOH HOH . 
D 4 HOH A 8 608 65 HOH HOH . 
D 4 HOH A 9 609 204 HOH HOH . 
D 4 HOH A 10 610 118 HOH HOH . 
D 4 HOH A 11 611 115 HOH HOH . 
D 4 HOH A 12 612 21 HOH HOH . 
D 4 HOH A 13 613 110 HOH HOH . 
D 4 HOH A 14 614 85 HOH HOH . 
D 4 HOH A 15 615 198 HOH HOH . 
D 4 HOH A 16 616 162 HOH HOH . 
D 4 HOH A 17 617 54 HOH HOH . 
D 4 HOH A 18 618 173 HOH HOH . 
D 4 HOH A 19 619 176 HOH HOH . 
D 4 HOH A 20 620 197 HOH HOH . 
D 4 HOH A 21 621 221 HOH HOH . 
D 4 HOH A 22 622 216 HOH HOH . 
D 4 HOH A 23 623 1 HOH HOH . 
D 4 HOH A 24 624 5 HOH HOH . 
D 4 HOH A 25 625 56 HOH HOH . 
D 4 HOH A 26 626 45 HOH HOH . 
D 4 HOH A 27 627 89 HOH HOH . 
D 4 HOH A 28 628 114 HOH HOH . 
D 4 HOH A 29 629 12 HOH HOH . 
D 4 HOH A 30 630 51 HOH HOH . 
D 4 HOH A 31 631 90 HOH HOH . 
D 4 HOH A 32 632 91 HOH HOH . 
D 4 HOH A 33 633 3 HOH HOH . 
D 4 HOH A 34 634 39 HOH HOH . 
D 4 HOH A 35 635 4 HOH HOH . 
D 4 HOH A 36 636 74 HOH HOH . 
D 4 HOH A 37 637 194 HOH HOH . 
D 4 HOH A 38 638 23 HOH HOH . 
D 4 HOH A 39 639 180 HOH HOH . 
D 4 HOH A 40 640 82 HOH HOH . 
D 4 HOH A 41 641 106 HOH HOH . 
D 4 HOH A 42 642 58 HOH HOH . 
D 4 HOH A 43 643 202 HOH HOH . 
D 4 HOH A 44 644 101 HOH HOH . 
D 4 HOH A 45 645 32 HOH HOH . 
D 4 HOH A 46 646 44 HOH HOH . 
D 4 HOH A 47 647 98 HOH HOH . 
D 4 HOH A 48 648 104 HOH HOH . 
D 4 HOH A 49 649 34 HOH HOH . 
D 4 HOH A 50 650 15 HOH HOH . 
D 4 HOH A 51 651 212 HOH HOH . 
D 4 HOH A 52 652 18 HOH HOH . 
D 4 HOH A 53 653 17 HOH HOH . 
D 4 HOH A 54 654 25 HOH HOH . 
D 4 HOH A 55 655 71 HOH HOH . 
D 4 HOH A 56 656 137 HOH HOH . 
D 4 HOH A 57 657 123 HOH HOH . 
D 4 HOH A 58 658 122 HOH HOH . 
D 4 HOH A 59 659 16 HOH HOH . 
D 4 HOH A 60 660 7 HOH HOH . 
D 4 HOH A 61 661 20 HOH HOH . 
D 4 HOH A 62 662 27 HOH HOH . 
D 4 HOH A 63 663 14 HOH HOH . 
D 4 HOH A 64 664 8 HOH HOH . 
D 4 HOH A 65 665 63 HOH HOH . 
D 4 HOH A 66 666 193 HOH HOH . 
D 4 HOH A 67 667 164 HOH HOH . 
D 4 HOH A 68 668 80 HOH HOH . 
D 4 HOH A 69 669 95 HOH HOH . 
D 4 HOH A 70 670 6 HOH HOH . 
D 4 HOH A 71 671 46 HOH HOH . 
D 4 HOH A 72 672 109 HOH HOH . 
D 4 HOH A 73 673 22 HOH HOH . 
D 4 HOH A 74 674 36 HOH HOH . 
D 4 HOH A 75 675 38 HOH HOH . 
D 4 HOH A 76 676 132 HOH HOH . 
D 4 HOH A 77 677 208 HOH HOH . 
D 4 HOH A 78 678 153 HOH HOH . 
D 4 HOH A 79 679 26 HOH HOH . 
D 4 HOH A 80 680 31 HOH HOH . 
D 4 HOH A 81 681 87 HOH HOH . 
D 4 HOH A 82 682 29 HOH HOH . 
D 4 HOH A 83 683 79 HOH HOH . 
D 4 HOH A 84 684 64 HOH HOH . 
D 4 HOH A 85 685 75 HOH HOH . 
D 4 HOH A 86 686 148 HOH HOH . 
D 4 HOH A 87 687 67 HOH HOH . 
D 4 HOH A 88 688 143 HOH HOH . 
D 4 HOH A 89 689 41 HOH HOH . 
D 4 HOH A 90 690 9 HOH HOH . 
D 4 HOH A 91 691 92 HOH HOH . 
D 4 HOH A 92 692 126 HOH HOH . 
D 4 HOH A 93 693 19 HOH HOH . 
D 4 HOH A 94 694 199 HOH HOH . 
D 4 HOH A 95 695 11 HOH HOH . 
D 4 HOH A 96 696 35 HOH HOH . 
D 4 HOH A 97 697 73 HOH HOH . 
D 4 HOH A 98 698 13 HOH HOH . 
D 4 HOH A 99 699 105 HOH HOH . 
D 4 HOH A 100 700 55 HOH HOH . 
D 4 HOH A 101 701 83 HOH HOH . 
D 4 HOH A 102 702 60 HOH HOH . 
D 4 HOH A 103 703 103 HOH HOH . 
D 4 HOH A 104 704 57 HOH HOH . 
D 4 HOH A 105 705 112 HOH HOH . 
D 4 HOH A 106 706 43 HOH HOH . 
D 4 HOH A 107 707 161 HOH HOH . 
D 4 HOH A 108 708 69 HOH HOH . 
D 4 HOH A 109 709 215 HOH HOH . 
D 4 HOH A 110 710 168 HOH HOH . 
D 4 HOH A 111 711 169 HOH HOH . 
D 4 HOH A 112 712 42 HOH HOH . 
D 4 HOH A 113 713 72 HOH HOH . 
D 4 HOH A 114 714 62 HOH HOH . 
D 4 HOH A 115 715 158 HOH HOH . 
D 4 HOH A 116 716 61 HOH HOH . 
D 4 HOH A 117 717 97 HOH HOH . 
D 4 HOH A 118 718 81 HOH HOH . 
D 4 HOH A 119 719 30 HOH HOH . 
D 4 HOH A 120 720 28 HOH HOH . 
D 4 HOH A 121 721 77 HOH HOH . 
D 4 HOH A 122 722 147 HOH HOH . 
D 4 HOH A 123 723 151 HOH HOH . 
D 4 HOH A 124 724 53 HOH HOH . 
D 4 HOH A 125 725 206 HOH HOH . 
D 4 HOH A 126 726 47 HOH HOH . 
D 4 HOH A 127 727 142 HOH HOH . 
D 4 HOH A 128 728 48 HOH HOH . 
D 4 HOH A 129 729 24 HOH HOH . 
D 4 HOH A 130 730 100 HOH HOH . 
D 4 HOH A 131 731 111 HOH HOH . 
D 4 HOH A 132 732 225 HOH HOH . 
D 4 HOH A 133 733 157 HOH HOH . 
D 4 HOH A 134 734 78 HOH HOH . 
D 4 HOH A 135 735 188 HOH HOH . 
D 4 HOH A 136 736 174 HOH HOH . 
D 4 HOH A 137 737 66 HOH HOH . 
D 4 HOH A 138 738 10 HOH HOH . 
D 4 HOH A 139 739 130 HOH HOH . 
D 4 HOH A 140 740 191 HOH HOH . 
D 4 HOH A 141 741 163 HOH HOH . 
D 4 HOH A 142 742 217 HOH HOH . 
D 4 HOH A 143 743 229 HOH HOH . 
D 4 HOH A 144 744 138 HOH HOH . 
D 4 HOH A 145 745 170 HOH HOH . 
D 4 HOH A 146 746 178 HOH HOH . 
D 4 HOH A 147 747 218 HOH HOH . 
D 4 HOH A 148 748 139 HOH HOH . 
D 4 HOH A 149 749 2 HOH HOH . 
D 4 HOH A 150 750 52 HOH HOH . 
D 4 HOH A 151 751 33 HOH HOH . 
D 4 HOH A 152 752 196 HOH HOH . 
D 4 HOH A 153 753 171 HOH HOH . 
D 4 HOH A 154 754 120 HOH HOH . 
D 4 HOH A 155 755 144 HOH HOH . 
D 4 HOH A 156 756 86 HOH HOH . 
D 4 HOH A 157 757 156 HOH HOH . 
D 4 HOH A 158 758 136 HOH HOH . 
D 4 HOH A 159 759 222 HOH HOH . 
D 4 HOH A 160 760 131 HOH HOH . 
D 4 HOH A 161 761 223 HOH HOH . 
D 4 HOH A 162 762 165 HOH HOH . 
D 4 HOH A 163 763 116 HOH HOH . 
D 4 HOH A 164 764 102 HOH HOH . 
D 4 HOH A 165 765 117 HOH HOH . 
D 4 HOH A 166 766 205 HOH HOH . 
D 4 HOH A 167 767 185 HOH HOH . 
D 4 HOH A 168 768 119 HOH HOH . 
D 4 HOH A 169 769 207 HOH HOH . 
D 4 HOH A 170 770 49 HOH HOH . 
D 4 HOH A 171 771 154 HOH HOH . 
D 4 HOH A 172 772 230 HOH HOH . 
D 4 HOH A 173 773 149 HOH HOH . 
D 4 HOH A 174 774 146 HOH HOH . 
D 4 HOH A 175 775 76 HOH HOH . 
D 4 HOH A 176 776 213 HOH HOH . 
D 4 HOH A 177 777 68 HOH HOH . 
D 4 HOH A 178 778 172 HOH HOH . 
D 4 HOH A 179 779 155 HOH HOH . 
D 4 HOH A 180 780 183 HOH HOH . 
D 4 HOH A 181 781 203 HOH HOH . 
D 4 HOH A 182 782 150 HOH HOH . 
D 4 HOH A 183 783 189 HOH HOH . 
D 4 HOH A 184 784 93 HOH HOH . 
D 4 HOH A 185 785 59 HOH HOH . 
D 4 HOH A 186 786 160 HOH HOH . 
D 4 HOH A 187 787 145 HOH HOH . 
D 4 HOH A 188 788 211 HOH HOH . 
D 4 HOH A 189 789 121 HOH HOH . 
D 4 HOH A 190 790 226 HOH HOH . 
D 4 HOH A 191 791 201 HOH HOH . 
D 4 HOH A 192 792 175 HOH HOH . 
D 4 HOH A 193 793 214 HOH HOH . 
D 4 HOH A 194 794 37 HOH HOH . 
D 4 HOH A 195 795 210 HOH HOH . 
D 4 HOH A 196 796 227 HOH HOH . 
D 4 HOH A 197 797 96 HOH HOH . 
D 4 HOH A 198 798 140 HOH HOH . 
D 4 HOH A 199 799 190 HOH HOH . 
D 4 HOH A 200 800 128 HOH HOH . 
D 4 HOH A 201 801 166 HOH HOH . 
D 4 HOH A 202 802 192 HOH HOH . 
D 4 HOH A 203 803 108 HOH HOH . 
D 4 HOH A 204 804 187 HOH HOH . 
D 4 HOH A 205 805 209 HOH HOH . 
D 4 HOH A 206 806 224 HOH HOH . 
D 4 HOH A 207 807 182 HOH HOH . 
D 4 HOH A 208 808 135 HOH HOH . 
D 4 HOH A 209 809 181 HOH HOH . 
D 4 HOH A 210 810 219 HOH HOH . 
D 4 HOH A 211 811 141 HOH HOH . 
D 4 HOH A 212 812 167 HOH HOH . 
D 4 HOH A 213 813 70 HOH HOH . 
D 4 HOH A 214 814 124 HOH HOH . 
D 4 HOH A 215 815 220 HOH HOH . 
D 4 HOH A 216 816 159 HOH HOH . 
D 4 HOH A 217 817 177 HOH HOH . 
D 4 HOH A 218 818 179 HOH HOH . 
D 4 HOH A 219 819 113 HOH HOH . 
D 4 HOH A 220 820 228 HOH HOH . 
D 4 HOH A 221 821 107 HOH HOH . 
D 4 HOH A 222 822 40 HOH HOH . 
D 4 HOH A 223 823 88 HOH HOH . 
D 4 HOH A 224 824 133 HOH HOH . 
D 4 HOH A 225 825 134 HOH HOH . 
D 4 HOH A 226 826 186 HOH HOH . 
D 4 HOH A 227 827 84 HOH HOH . 
D 4 HOH A 228 828 129 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -10.419 
_atom_site.Cartn_y               11.215 
_atom_site.Cartn_z               -25.992 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        16.99 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#