data_7DYU
#
_model_server_result.job_id            9oa3XVS277lUA7oqbRuLwA 
_model_server_result.datetime_utc      '2025-02-26 21:28:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dyu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":701}' 
#
_entry.id    7DYU 
#
_exptl.entry_id    7DYU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DYU 
_cell.length_a            49.372 
_cell.length_b            64.564 
_cell.length_c            78.486 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 140 A HIS 321 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc2 A OD2 ASP 142 A ASP 323 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc3 A NE2 HIS 219 A HIS 400 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc4 C MN MN . A MN 702 1_555 E O2 HR9 . A HR9 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc5 C MN MN . A MN 702 1_555 E N1 HR9 . A HR9 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc6 C MN MN . A MN 702 1_555 F O HOH . A HOH 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 376 n n 
C C2 TRS sing 377 n n 
C C3 TRS sing 378 n n 
C N TRS sing 379 n n 
C1 O1 TRS sing 380 n n 
C1 H11 TRS sing 381 n n 
C1 H12 TRS sing 382 n n 
C2 O2 TRS sing 383 n n 
C2 H21 TRS sing 384 n n 
C2 H22 TRS sing 385 n n 
C3 O3 TRS sing 386 n n 
C3 H31 TRS sing 387 n n 
C3 H32 TRS sing 388 n n 
N HN1 TRS sing 389 n n 
N HN2 TRS sing 390 n n 
N HN3 TRS sing 391 n n 
O1 HO1 TRS sing 392 n n 
O2 HO2 TRS sing 393 n n 
O3 HO3 TRS sing 394 n n 
#
_atom_sites.entry_id                     7DYU 
_atom_sites.fract_transf_matrix[1][1]    0.020254 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015489 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012741 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TRS A 1 701 701 TRS TRS . 
C 3 MN A 1 702 501 MN MN . 
D 2 TRS A 1 703 601 TRS TRS . 
E 4 HR9 A 1 704 1 HR9 LIG . 
F 5 HOH A 1 801 146 HOH HOH . 
F 5 HOH A 2 802 158 HOH HOH . 
F 5 HOH A 3 803 42 HOH HOH . 
F 5 HOH A 4 804 33 HOH HOH . 
F 5 HOH A 5 805 66 HOH HOH . 
F 5 HOH A 6 806 49 HOH HOH . 
F 5 HOH A 7 807 181 HOH HOH . 
F 5 HOH A 8 808 159 HOH HOH . 
F 5 HOH A 9 809 7 HOH HOH . 
F 5 HOH A 10 810 45 HOH HOH . 
F 5 HOH A 11 811 43 HOH HOH . 
F 5 HOH A 12 812 52 HOH HOH . 
F 5 HOH A 13 813 6 HOH HOH . 
F 5 HOH A 14 814 69 HOH HOH . 
F 5 HOH A 15 815 44 HOH HOH . 
F 5 HOH A 16 816 40 HOH HOH . 
F 5 HOH A 17 817 24 HOH HOH . 
F 5 HOH A 18 818 39 HOH HOH . 
F 5 HOH A 19 819 11 HOH HOH . 
F 5 HOH A 20 820 150 HOH HOH . 
F 5 HOH A 21 821 14 HOH HOH . 
F 5 HOH A 22 822 38 HOH HOH . 
F 5 HOH A 23 823 80 HOH HOH . 
F 5 HOH A 24 824 133 HOH HOH . 
F 5 HOH A 25 825 21 HOH HOH . 
F 5 HOH A 26 826 176 HOH HOH . 
F 5 HOH A 27 827 185 HOH HOH . 
F 5 HOH A 28 828 178 HOH HOH . 
F 5 HOH A 29 829 5 HOH HOH . 
F 5 HOH A 30 830 136 HOH HOH . 
F 5 HOH A 31 831 8 HOH HOH . 
F 5 HOH A 32 832 10 HOH HOH . 
F 5 HOH A 33 833 77 HOH HOH . 
F 5 HOH A 34 834 3 HOH HOH . 
F 5 HOH A 35 835 153 HOH HOH . 
F 5 HOH A 36 836 23 HOH HOH . 
F 5 HOH A 37 837 26 HOH HOH . 
F 5 HOH A 38 838 62 HOH HOH . 
F 5 HOH A 39 839 31 HOH HOH . 
F 5 HOH A 40 840 78 HOH HOH . 
F 5 HOH A 41 841 99 HOH HOH . 
F 5 HOH A 42 842 46 HOH HOH . 
F 5 HOH A 43 843 60 HOH HOH . 
F 5 HOH A 44 844 110 HOH HOH . 
F 5 HOH A 45 845 83 HOH HOH . 
F 5 HOH A 46 846 4 HOH HOH . 
F 5 HOH A 47 847 173 HOH HOH . 
F 5 HOH A 48 848 1 HOH HOH . 
F 5 HOH A 49 849 67 HOH HOH . 
F 5 HOH A 50 850 22 HOH HOH . 
F 5 HOH A 51 851 17 HOH HOH . 
F 5 HOH A 52 852 25 HOH HOH . 
F 5 HOH A 53 853 132 HOH HOH . 
F 5 HOH A 54 854 144 HOH HOH . 
F 5 HOH A 55 855 32 HOH HOH . 
F 5 HOH A 56 856 51 HOH HOH . 
F 5 HOH A 57 857 9 HOH HOH . 
F 5 HOH A 58 858 85 HOH HOH . 
F 5 HOH A 59 859 34 HOH HOH . 
F 5 HOH A 60 860 103 HOH HOH . 
F 5 HOH A 61 861 15 HOH HOH . 
F 5 HOH A 62 862 12 HOH HOH . 
F 5 HOH A 63 863 165 HOH HOH . 
F 5 HOH A 64 864 81 HOH HOH . 
F 5 HOH A 65 865 20 HOH HOH . 
F 5 HOH A 66 866 35 HOH HOH . 
F 5 HOH A 67 867 19 HOH HOH . 
F 5 HOH A 68 868 73 HOH HOH . 
F 5 HOH A 69 869 18 HOH HOH . 
F 5 HOH A 70 870 71 HOH HOH . 
F 5 HOH A 71 871 55 HOH HOH . 
F 5 HOH A 72 872 115 HOH HOH . 
F 5 HOH A 73 873 65 HOH HOH . 
F 5 HOH A 74 874 13 HOH HOH . 
F 5 HOH A 75 875 70 HOH HOH . 
F 5 HOH A 76 876 54 HOH HOH . 
F 5 HOH A 77 877 97 HOH HOH . 
F 5 HOH A 78 878 27 HOH HOH . 
F 5 HOH A 79 879 30 HOH HOH . 
F 5 HOH A 80 880 37 HOH HOH . 
F 5 HOH A 81 881 88 HOH HOH . 
F 5 HOH A 82 882 134 HOH HOH . 
F 5 HOH A 83 883 28 HOH HOH . 
F 5 HOH A 84 884 94 HOH HOH . 
F 5 HOH A 85 885 142 HOH HOH . 
F 5 HOH A 86 886 47 HOH HOH . 
F 5 HOH A 87 887 126 HOH HOH . 
F 5 HOH A 88 888 59 HOH HOH . 
F 5 HOH A 89 889 127 HOH HOH . 
F 5 HOH A 90 890 86 HOH HOH . 
F 5 HOH A 91 891 179 HOH HOH . 
F 5 HOH A 92 892 149 HOH HOH . 
F 5 HOH A 93 893 36 HOH HOH . 
F 5 HOH A 94 894 169 HOH HOH . 
F 5 HOH A 95 895 124 HOH HOH . 
F 5 HOH A 96 896 130 HOH HOH . 
F 5 HOH A 97 897 58 HOH HOH . 
F 5 HOH A 98 898 29 HOH HOH . 
F 5 HOH A 99 899 95 HOH HOH . 
F 5 HOH A 100 900 177 HOH HOH . 
F 5 HOH A 101 901 74 HOH HOH . 
F 5 HOH A 102 902 139 HOH HOH . 
F 5 HOH A 103 903 63 HOH HOH . 
F 5 HOH A 104 904 93 HOH HOH . 
F 5 HOH A 105 905 145 HOH HOH . 
F 5 HOH A 106 906 16 HOH HOH . 
F 5 HOH A 107 907 53 HOH HOH . 
F 5 HOH A 108 908 129 HOH HOH . 
F 5 HOH A 109 909 141 HOH HOH . 
F 5 HOH A 110 910 89 HOH HOH . 
F 5 HOH A 111 911 56 HOH HOH . 
F 5 HOH A 112 912 114 HOH HOH . 
F 5 HOH A 113 913 75 HOH HOH . 
F 5 HOH A 114 914 48 HOH HOH . 
F 5 HOH A 115 915 64 HOH HOH . 
F 5 HOH A 116 916 118 HOH HOH . 
F 5 HOH A 117 917 160 HOH HOH . 
F 5 HOH A 118 918 168 HOH HOH . 
F 5 HOH A 119 919 131 HOH HOH . 
F 5 HOH A 120 920 2 HOH HOH . 
F 5 HOH A 121 921 91 HOH HOH . 
F 5 HOH A 122 922 180 HOH HOH . 
F 5 HOH A 123 923 84 HOH HOH . 
F 5 HOH A 124 924 82 HOH HOH . 
F 5 HOH A 125 925 116 HOH HOH . 
F 5 HOH A 126 926 119 HOH HOH . 
F 5 HOH A 127 927 87 HOH HOH . 
F 5 HOH A 128 928 57 HOH HOH . 
F 5 HOH A 129 929 90 HOH HOH . 
F 5 HOH A 130 930 100 HOH HOH . 
F 5 HOH A 131 931 102 HOH HOH . 
F 5 HOH A 132 932 182 HOH HOH . 
F 5 HOH A 133 933 157 HOH HOH . 
F 5 HOH A 134 934 164 HOH HOH . 
F 5 HOH A 135 935 147 HOH HOH . 
F 5 HOH A 136 936 61 HOH HOH . 
F 5 HOH A 137 937 92 HOH HOH . 
F 5 HOH A 138 938 50 HOH HOH . 
F 5 HOH A 139 939 162 HOH HOH . 
F 5 HOH A 140 940 166 HOH HOH . 
F 5 HOH A 141 941 137 HOH HOH . 
F 5 HOH A 142 942 125 HOH HOH . 
F 5 HOH A 143 943 161 HOH HOH . 
F 5 HOH A 144 944 76 HOH HOH . 
F 5 HOH A 145 945 109 HOH HOH . 
F 5 HOH A 146 946 171 HOH HOH . 
F 5 HOH A 147 947 186 HOH HOH . 
F 5 HOH A 148 948 138 HOH HOH . 
F 5 HOH A 149 949 156 HOH HOH . 
F 5 HOH A 150 950 117 HOH HOH . 
F 5 HOH A 151 951 172 HOH HOH . 
F 5 HOH A 152 952 123 HOH HOH . 
F 5 HOH A 153 953 41 HOH HOH . 
F 5 HOH A 154 954 174 HOH HOH . 
F 5 HOH A 155 955 113 HOH HOH . 
F 5 HOH A 156 956 121 HOH HOH . 
F 5 HOH A 157 957 104 HOH HOH . 
F 5 HOH A 158 958 154 HOH HOH . 
F 5 HOH A 159 959 106 HOH HOH . 
F 5 HOH A 160 960 148 HOH HOH . 
F 5 HOH A 161 961 167 HOH HOH . 
F 5 HOH A 162 962 105 HOH HOH . 
F 5 HOH A 163 963 111 HOH HOH . 
F 5 HOH A 164 964 79 HOH HOH . 
F 5 HOH A 165 965 135 HOH HOH . 
F 5 HOH A 166 966 140 HOH HOH . 
F 5 HOH A 167 967 143 HOH HOH . 
F 5 HOH A 168 968 184 HOH HOH . 
F 5 HOH A 169 969 98 HOH HOH . 
F 5 HOH A 170 970 112 HOH HOH . 
F 5 HOH A 171 971 68 HOH HOH . 
F 5 HOH A 172 972 170 HOH HOH . 
F 5 HOH A 173 973 152 HOH HOH . 
F 5 HOH A 174 974 183 HOH HOH . 
F 5 HOH A 175 975 187 HOH HOH . 
F 5 HOH A 176 976 155 HOH HOH . 
F 5 HOH A 177 977 72 HOH HOH . 
F 5 HOH A 178 978 122 HOH HOH . 
F 5 HOH A 179 979 151 HOH HOH . 
F 5 HOH A 180 980 175 HOH HOH . 
F 5 HOH A 181 981 120 HOH HOH . 
F 5 HOH A 182 982 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . B 2 15.645 8.747 -22.691 1 132.38 ? C TRS 701 A 1 
HETATM 2 C C1 TRS . . . B 2 14.712 7.636 -23.129 1 132.85 ? C1 TRS 701 A 1 
HETATM 3 C C2 TRS . . . B 2 14.93 10.097 -22.617 1 129.76 ? C2 TRS 701 A 1 
HETATM 4 C C3 TRS . . . B 2 16.246 8.344 -21.343 1 132.48 ? C3 TRS 701 A 1 
HETATM 5 N N TRS . . . B 2 16.81 8.822 -23.711 1 134.02 ? N TRS 701 A 1 
HETATM 6 O O1 TRS . . . B 2 14.588 6.693 -22.089 1 130.85 ? O1 TRS 701 A 1 
HETATM 7 O O2 TRS . . . B 2 15.368 10.896 -21.537 1 125.68 ? O2 TRS 701 A 1 
HETATM 8 O O3 TRS . . . B 2 15.275 7.688 -20.565 1 130.88 ? O3 TRS 701 A 1 
HETATM 9 H H11 TRS . . . B 2 15.104 7.153 -24.023 1 159.76 ? H11 TRS 701 A 1 
HETATM 10 H H12 TRS . . . B 2 13.733 8.049 -23.373 1 159.76 ? H12 TRS 701 A 1 
HETATM 11 H H21 TRS . . . B 2 13.858 9.925 -22.519 1 156.06 ? H21 TRS 701 A 1 
HETATM 12 H H22 TRS . . . B 2 15.098 10.639 -23.548 1 156.06 ? H22 TRS 701 A 1 
HETATM 13 H H31 TRS . . . B 2 16.602 9.231 -20.818 1 159.33 ? H31 TRS 701 A 1 
HETATM 14 H H32 TRS . . . B 2 17.099 7.684 -21.502 1 159.33 ? H32 TRS 701 A 1 
HETATM 15 H HN1 TRS . . . B 2 17.395 8.009 -23.874 1 161.17 ? HN1 TRS 701 A 1 
HETATM 16 H HN2 TRS . . . B 2 17.56 9.493 -23.577 1 161.17 ? HN2 TRS 701 A 1 
HETATM 17 H HN3 TRS . . . B 2 16.619 9.039 -24.684 1 161.17 ? HN3 TRS 701 A 1 
HETATM 18 H HO1 TRS . . . B 2 14.006 5.96 -22.38 1 157.36 ? HO1 TRS 701 A 1 
HETATM 19 H HO2 TRS . . . B 2 14.848 11.727 -21.514 1 151.17 ? HO2 TRS 701 A 1 
HETATM 20 H HO3 TRS . . . B 2 15.691 7.339 -19.749 1 157.41 ? HO3 TRS 701 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           20 
#