data_7DYW # _model_server_result.job_id sU1beRYO7gMmnOykuMnxiA _model_server_result.datetime_utc '2024-10-18 16:28:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7DYW # _exptl.entry_id 7DYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.282 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-((2-methoxybenzyl)amino)pyridine-2,4-dicarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DYW _cell.length_a 49.642 _cell.length_b 65.415 _cell.length_c 79.566 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 141 A HIS 321 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 A OD2 ASP 143 A ASP 323 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc3 A NE2 HIS 220 A HIS 400 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc4 B N13 HRL . A HRL 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc5 B O16 HRL . A HRL 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc6 C MN MN . A MN 602 1_555 D O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? # _chem_comp.formula 'C15 H14 N2 O5' _chem_comp.formula_weight 302.282 _chem_comp.id HRL _chem_comp.mon_nstd_flag . _chem_comp.name '5-((2-methoxybenzyl)amino)pyridine-2,4-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C3 HRL sing 152 n n O2 C1 HRL sing 153 n n C9 C8 HRL sing 154 n n C9 N10 HRL sing 155 n n C3 C8 HRL doub 156 n y C3 C4 HRL sing 157 n y C8 C7 HRL sing 158 n y C4 C5 HRL doub 159 n y C12 N13 HRL doub 160 n y C12 C11 HRL sing 161 n y C7 C6 HRL doub 162 n y C5 C6 HRL sing 163 n y N13 C14 HRL sing 164 n y O16 C15 HRL doub 165 n n N10 C11 HRL sing 166 n n C11 C19 HRL doub 167 n y C14 C15 HRL sing 168 n n C14 C18 HRL doub 169 n y C15 O17 HRL sing 170 n n C19 C18 HRL sing 171 n y C19 C20 HRL sing 172 n n O22 C20 HRL doub 173 n n C20 O21 HRL sing 174 n n C1 H11 HRL sing 175 n n C1 H13 HRL sing 176 n n C1 H12 HRL sing 177 n n C4 H41 HRL sing 178 n n C5 H51 HRL sing 179 n n C6 H61 HRL sing 180 n n C7 H71 HRL sing 181 n n C9 H92 HRL sing 182 n n C9 H91 HRL sing 183 n n C12 H121 HRL sing 184 n n C18 H181 HRL sing 185 n n N10 H101 HRL sing 186 n n O17 H1 HRL sing 187 n n O21 H2 HRL sing 188 n n # _atom_sites.entry_id 7DYW _atom_sites.fract_transf_matrix[1][1] 0.020144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HRL A 1 601 601 HRL LIG . C 3 MN A 1 602 501 MN MN . D 4 HOH A 1 701 42 HOH HOH . D 4 HOH A 2 702 25 HOH HOH . D 4 HOH A 3 703 31 HOH HOH . D 4 HOH A 4 704 33 HOH HOH . D 4 HOH A 5 705 2 HOH HOH . D 4 HOH A 6 706 11 HOH HOH . D 4 HOH A 7 707 13 HOH HOH . D 4 HOH A 8 708 7 HOH HOH . D 4 HOH A 9 709 27 HOH HOH . D 4 HOH A 10 710 69 HOH HOH . D 4 HOH A 11 711 5 HOH HOH . D 4 HOH A 12 712 16 HOH HOH . D 4 HOH A 13 713 17 HOH HOH . D 4 HOH A 14 714 3 HOH HOH . D 4 HOH A 15 715 12 HOH HOH . D 4 HOH A 16 716 45 HOH HOH . D 4 HOH A 17 717 20 HOH HOH . D 4 HOH A 18 718 9 HOH HOH . D 4 HOH A 19 719 72 HOH HOH . D 4 HOH A 20 720 23 HOH HOH . D 4 HOH A 21 721 57 HOH HOH . D 4 HOH A 22 722 8 HOH HOH . D 4 HOH A 23 723 29 HOH HOH . D 4 HOH A 24 724 10 HOH HOH . D 4 HOH A 25 725 15 HOH HOH . D 4 HOH A 26 726 24 HOH HOH . D 4 HOH A 27 727 6 HOH HOH . D 4 HOH A 28 728 65 HOH HOH . D 4 HOH A 29 729 34 HOH HOH . D 4 HOH A 30 730 40 HOH HOH . D 4 HOH A 31 731 28 HOH HOH . D 4 HOH A 32 732 67 HOH HOH . D 4 HOH A 33 733 18 HOH HOH . D 4 HOH A 34 734 1 HOH HOH . D 4 HOH A 35 735 43 HOH HOH . D 4 HOH A 36 736 46 HOH HOH . D 4 HOH A 37 737 64 HOH HOH . D 4 HOH A 38 738 37 HOH HOH . D 4 HOH A 39 739 26 HOH HOH . D 4 HOH A 40 740 52 HOH HOH . D 4 HOH A 41 741 14 HOH HOH . D 4 HOH A 42 742 21 HOH HOH . D 4 HOH A 43 743 22 HOH HOH . D 4 HOH A 44 744 30 HOH HOH . D 4 HOH A 45 745 44 HOH HOH . D 4 HOH A 46 746 4 HOH HOH . D 4 HOH A 47 747 53 HOH HOH . D 4 HOH A 48 748 56 HOH HOH . D 4 HOH A 49 749 51 HOH HOH . D 4 HOH A 50 750 49 HOH HOH . D 4 HOH A 51 751 60 HOH HOH . D 4 HOH A 52 752 71 HOH HOH . D 4 HOH A 53 753 74 HOH HOH . D 4 HOH A 54 754 54 HOH HOH . D 4 HOH A 55 755 19 HOH HOH . D 4 HOH A 56 756 47 HOH HOH . D 4 HOH A 57 757 70 HOH HOH . D 4 HOH A 58 758 62 HOH HOH . D 4 HOH A 59 759 39 HOH HOH . D 4 HOH A 60 760 48 HOH HOH . D 4 HOH A 61 761 75 HOH HOH . D 4 HOH A 62 762 50 HOH HOH . D 4 HOH A 63 763 41 HOH HOH . D 4 HOH A 64 764 73 HOH HOH . D 4 HOH A 65 765 66 HOH HOH . D 4 HOH A 66 766 35 HOH HOH . D 4 HOH A 67 767 55 HOH HOH . D 4 HOH A 68 768 59 HOH HOH . D 4 HOH A 69 769 68 HOH HOH . D 4 HOH A 70 770 58 HOH HOH . D 4 HOH A 71 771 63 HOH HOH . D 4 HOH A 72 772 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 HRL . . . B 2 -10.921 11.989 -23.605 1 60.63 ? C15 HRL 601 A 1 HETATM 2 C C20 HRL . . . B 2 -6.316 12.954 -21.81 1 63.02 ? C20 HRL 601 A 1 HETATM 3 C C1 HRL . . . B 2 -4.07 6.719 -24.873 1 106 ? C1 HRL 601 A 1 HETATM 4 C C3 HRL . . . B 2 -3.193 8.927 -25.129 1 99.65 ? C3 HRL 601 A 1 HETATM 5 C C4 HRL . . . B 2 -1.89 8.494 -25.022 1 99.63 ? C4 HRL 601 A 1 HETATM 6 C C5 HRL . . . B 2 -0.869 9.4 -24.843 1 99 ? C5 HRL 601 A 1 HETATM 7 C C6 HRL . . . B 2 -1.141 10.74 -24.763 1 97.23 ? C6 HRL 601 A 1 HETATM 8 C C7 HRL . . . B 2 -2.438 11.172 -24.875 1 94.95 ? C7 HRL 601 A 1 HETATM 9 C C8 HRL . . . B 2 -3.461 10.271 -25.049 1 93.06 ? C8 HRL 601 A 1 HETATM 10 C C9 HRL . . . B 2 -4.908 10.713 -25.202 1 85.04 ? C9 HRL 601 A 1 HETATM 11 C C11 HRL . . . B 2 -6.735 11.905 -24.059 1 70.47 ? C11 HRL 601 A 1 HETATM 12 C C12 HRL . . . B 2 -7.626 11.463 -24.996 1 68.34 ? C12 HRL 601 A 1 HETATM 13 C C14 HRL . . . B 2 -9.425 11.997 -23.75 1 62.91 ? C14 HRL 601 A 1 HETATM 14 C C18 HRL . . . B 2 -8.617 12.466 -22.746 1 63.26 ? C18 HRL 601 A 1 HETATM 15 C C19 HRL . . . B 2 -7.236 12.416 -22.888 1 65.55 ? C19 HRL 601 A 1 HETATM 16 N N10 HRL . . . B 2 -5.327 11.788 -24.332 1 77.5 ? N10 HRL 601 A 1 HETATM 17 N N13 HRL . . . B 2 -8.912 11.508 -24.829 1 65.82 ? N13 HRL 601 A 1 HETATM 18 O O2 HRL . . . B 2 -4.253 8.029 -25.329 1 104.51 ? O2 HRL 601 A 1 HETATM 19 O O16 HRL . . . B 2 -11.624 11.482 -24.497 1 58.91 ? O16 HRL 601 A 1 HETATM 20 O O17 HRL . . . B 2 -11.473 12.422 -22.579 1 60.56 -1 O17 HRL 601 A 1 HETATM 21 O O21 HRL . . . B 2 -6.835 13.467 -20.797 1 62.32 ? O21 HRL 601 A 1 HETATM 22 O O22 HRL . . . B 2 -5.074 12.913 -21.951 1 62.07 -1 O22 HRL 601 A 1 HETATM 23 H H11 HRL . . . B 2 -5.014 6.185 -24.92 1 127.25 ? H11 HRL 601 A 1 HETATM 24 H H13 HRL . . . B 2 -3.715 6.739 -23.847 1 127.25 ? H13 HRL 601 A 1 HETATM 25 H H12 HRL . . . B 2 -3.338 6.218 -25.499 1 127.25 ? H12 HRL 601 A 1 HETATM 26 H H41 HRL . . . B 2 -1.668 7.436 -25.08 1 119.61 ? H41 HRL 601 A 1 HETATM 27 H H51 HRL . . . B 2 0.154 9.052 -24.765 1 118.85 ? H51 HRL 601 A 1 HETATM 28 H H61 HRL . . . B 2 -0.339 11.453 -24.613 1 116.72 ? H61 HRL 601 A 1 HETATM 29 H H71 HRL . . . B 2 -2.657 12.231 -24.826 1 113.99 ? H71 HRL 601 A 1 HETATM 30 H H92 HRL . . . B 2 -5.543 9.855 -25.004 1 102.09 ? H92 HRL 601 A 1 HETATM 31 H H91 HRL . . . B 2 -5.053 11.036 -26.228 1 102.09 ? H91 HRL 601 A 1 HETATM 32 H H121 HRL . . . B 2 -7.24 11.056 -25.923 1 82.06 ? H121 HRL 601 A 1 HETATM 33 H H181 HRL . . . B 2 -9.055 12.874 -21.843 1 75.97 ? H181 HRL 601 A 1 HETATM 34 H H101 HRL . . . B 2 -4.664 12.425 -23.936 1 93.05 ? H101 HRL 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #