data_7DYW # _model_server_result.job_id AezuNVEuHuAAZ-_6bn4dJw _model_server_result.datetime_utc '2024-10-18 16:23:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 7DYW # _exptl.entry_id 7DYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DYW _cell.length_a 49.642 _cell.length_b 65.415 _cell.length_c 79.566 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 141 A HIS 321 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 A OD2 ASP 143 A ASP 323 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc3 A NE2 HIS 220 A HIS 400 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc4 B N13 HRL . A HRL 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc5 B O16 HRL . A HRL 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc6 C MN MN . A MN 602 1_555 D O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DYW _atom_sites.fract_transf_matrix[1][1] 0.020144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HRL A 1 601 601 HRL LIG . C 3 MN A 1 602 501 MN MN . D 4 HOH A 1 701 42 HOH HOH . D 4 HOH A 2 702 25 HOH HOH . D 4 HOH A 3 703 31 HOH HOH . D 4 HOH A 4 704 33 HOH HOH . D 4 HOH A 5 705 2 HOH HOH . D 4 HOH A 6 706 11 HOH HOH . D 4 HOH A 7 707 13 HOH HOH . D 4 HOH A 8 708 7 HOH HOH . D 4 HOH A 9 709 27 HOH HOH . D 4 HOH A 10 710 69 HOH HOH . D 4 HOH A 11 711 5 HOH HOH . D 4 HOH A 12 712 16 HOH HOH . D 4 HOH A 13 713 17 HOH HOH . D 4 HOH A 14 714 3 HOH HOH . D 4 HOH A 15 715 12 HOH HOH . D 4 HOH A 16 716 45 HOH HOH . D 4 HOH A 17 717 20 HOH HOH . D 4 HOH A 18 718 9 HOH HOH . D 4 HOH A 19 719 72 HOH HOH . D 4 HOH A 20 720 23 HOH HOH . D 4 HOH A 21 721 57 HOH HOH . D 4 HOH A 22 722 8 HOH HOH . D 4 HOH A 23 723 29 HOH HOH . D 4 HOH A 24 724 10 HOH HOH . D 4 HOH A 25 725 15 HOH HOH . D 4 HOH A 26 726 24 HOH HOH . D 4 HOH A 27 727 6 HOH HOH . D 4 HOH A 28 728 65 HOH HOH . D 4 HOH A 29 729 34 HOH HOH . D 4 HOH A 30 730 40 HOH HOH . D 4 HOH A 31 731 28 HOH HOH . D 4 HOH A 32 732 67 HOH HOH . D 4 HOH A 33 733 18 HOH HOH . D 4 HOH A 34 734 1 HOH HOH . D 4 HOH A 35 735 43 HOH HOH . D 4 HOH A 36 736 46 HOH HOH . D 4 HOH A 37 737 64 HOH HOH . D 4 HOH A 38 738 37 HOH HOH . D 4 HOH A 39 739 26 HOH HOH . D 4 HOH A 40 740 52 HOH HOH . D 4 HOH A 41 741 14 HOH HOH . D 4 HOH A 42 742 21 HOH HOH . D 4 HOH A 43 743 22 HOH HOH . D 4 HOH A 44 744 30 HOH HOH . D 4 HOH A 45 745 44 HOH HOH . D 4 HOH A 46 746 4 HOH HOH . D 4 HOH A 47 747 53 HOH HOH . D 4 HOH A 48 748 56 HOH HOH . D 4 HOH A 49 749 51 HOH HOH . D 4 HOH A 50 750 49 HOH HOH . D 4 HOH A 51 751 60 HOH HOH . D 4 HOH A 52 752 71 HOH HOH . D 4 HOH A 53 753 74 HOH HOH . D 4 HOH A 54 754 54 HOH HOH . D 4 HOH A 55 755 19 HOH HOH . D 4 HOH A 56 756 47 HOH HOH . D 4 HOH A 57 757 70 HOH HOH . D 4 HOH A 58 758 62 HOH HOH . D 4 HOH A 59 759 39 HOH HOH . D 4 HOH A 60 760 48 HOH HOH . D 4 HOH A 61 761 75 HOH HOH . D 4 HOH A 62 762 50 HOH HOH . D 4 HOH A 63 763 41 HOH HOH . D 4 HOH A 64 764 73 HOH HOH . D 4 HOH A 65 765 66 HOH HOH . D 4 HOH A 66 766 35 HOH HOH . D 4 HOH A 67 767 55 HOH HOH . D 4 HOH A 68 768 59 HOH HOH . D 4 HOH A 69 769 68 HOH HOH . D 4 HOH A 70 770 58 HOH HOH . D 4 HOH A 71 771 63 HOH HOH . D 4 HOH A 72 772 61 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -10.501 _atom_site.Cartn_y 11.158 _atom_site.Cartn_z -26.474 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 247 _model_server_stats.parse_time_ms 124 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #