data_7DYX
#
_model_server_result.job_id            0FVWq5L0v2Ala9lV0GFs4A 
_model_server_result.datetime_utc      '2024-12-23 05:16:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dyx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    7DYX 
#
_exptl.entry_id    7DYX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DYX 
_cell.length_a            48.92 
_cell.length_b            64.75 
_cell.length_c            78.649 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DYX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 140 A HIS 321 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc2 A OD2 ASP 142 A ASP 323 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc3 A NE2 HIS 219 A HIS 400 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc4 B MN MN . A MN 501 1_555 C O3 HRR . A HRR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc5 B MN MN . A MN 501 1_555 C N23 HRR . A HRR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc6 B MN MN . A MN 501 1_555 D O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7DYX 
_atom_sites.fract_transf_matrix[1][1]    0.020442 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012715 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 501 501 MN MN . 
C 3 HRR A 1 502 601 HRR LIG . 
D 4 HOH A 1 601 57 HOH HOH . 
D 4 HOH A 2 602 40 HOH HOH . 
D 4 HOH A 3 603 14 HOH HOH . 
D 4 HOH A 4 604 30 HOH HOH . 
D 4 HOH A 5 605 28 HOH HOH . 
D 4 HOH A 6 606 31 HOH HOH . 
D 4 HOH A 7 607 17 HOH HOH . 
D 4 HOH A 8 608 27 HOH HOH . 
D 4 HOH A 9 609 58 HOH HOH . 
D 4 HOH A 10 610 13 HOH HOH . 
D 4 HOH A 11 611 38 HOH HOH . 
D 4 HOH A 12 612 1 HOH HOH . 
D 4 HOH A 13 613 23 HOH HOH . 
D 4 HOH A 14 614 11 HOH HOH . 
D 4 HOH A 15 615 62 HOH HOH . 
D 4 HOH A 16 616 2 HOH HOH . 
D 4 HOH A 17 617 3 HOH HOH . 
D 4 HOH A 18 618 18 HOH HOH . 
D 4 HOH A 19 619 4 HOH HOH . 
D 4 HOH A 20 620 12 HOH HOH . 
D 4 HOH A 21 621 55 HOH HOH . 
D 4 HOH A 22 622 7 HOH HOH . 
D 4 HOH A 23 623 25 HOH HOH . 
D 4 HOH A 24 624 42 HOH HOH . 
D 4 HOH A 25 625 5 HOH HOH . 
D 4 HOH A 26 626 10 HOH HOH . 
D 4 HOH A 27 627 26 HOH HOH . 
D 4 HOH A 28 628 36 HOH HOH . 
D 4 HOH A 29 629 9 HOH HOH . 
D 4 HOH A 30 630 20 HOH HOH . 
D 4 HOH A 31 631 49 HOH HOH . 
D 4 HOH A 32 632 46 HOH HOH . 
D 4 HOH A 33 633 16 HOH HOH . 
D 4 HOH A 34 634 22 HOH HOH . 
D 4 HOH A 35 635 61 HOH HOH . 
D 4 HOH A 36 636 45 HOH HOH . 
D 4 HOH A 37 637 34 HOH HOH . 
D 4 HOH A 38 638 35 HOH HOH . 
D 4 HOH A 39 639 15 HOH HOH . 
D 4 HOH A 40 640 48 HOH HOH . 
D 4 HOH A 41 641 32 HOH HOH . 
D 4 HOH A 42 642 41 HOH HOH . 
D 4 HOH A 43 643 19 HOH HOH . 
D 4 HOH A 44 644 21 HOH HOH . 
D 4 HOH A 45 645 56 HOH HOH . 
D 4 HOH A 46 646 59 HOH HOH . 
D 4 HOH A 47 647 54 HOH HOH . 
D 4 HOH A 48 648 37 HOH HOH . 
D 4 HOH A 49 649 39 HOH HOH . 
D 4 HOH A 50 650 47 HOH HOH . 
D 4 HOH A 51 651 44 HOH HOH . 
D 4 HOH A 52 652 50 HOH HOH . 
D 4 HOH A 53 653 29 HOH HOH . 
D 4 HOH A 54 654 53 HOH HOH . 
D 4 HOH A 55 655 43 HOH HOH . 
D 4 HOH A 56 656 60 HOH HOH . 
D 4 HOH A 57 657 6 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -10.378 
_atom_site.Cartn_y               11.108 
_atom_site.Cartn_z               -26.203 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.07 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              143 
_model_server_stats.parse_time_ms           154 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#