data_7DYX # _model_server_result.job_id XQVOINYyEI0ph-OjDKxYlQ _model_server_result.datetime_utc '2024-11-05 08:33:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dyx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7DYX # _exptl.entry_id 7DYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.32 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-((2-cyclopropylbenzyl)amino)pyridine-2,4-dicarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DYX _cell.length_a 48.92 _cell.length_b 64.75 _cell.length_c 78.649 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 140 A HIS 321 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc2 A OD2 ASP 142 A ASP 323 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc3 A NE2 HIS 219 A HIS 400 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc4 B MN MN . A MN 501 1_555 C O3 HRR . A HRR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 B MN MN . A MN 501 1_555 C N23 HRR . A HRR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 B MN MN . A MN 501 1_555 D O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? # _chem_comp.formula 'C17 H16 N2 O4' _chem_comp.formula_weight 312.32 _chem_comp.id HRR _chem_comp.mon_nstd_flag . _chem_comp.name '5-((2-cyclopropylbenzyl)amino)pyridine-2,4-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C19 HRR sing 152 n n C21 C20 HRR sing 153 n n C19 C18 HRR sing 154 n n C19 C20 HRR sing 155 n n C18 C17 HRR doub 156 n y C18 C13 HRR sing 157 n y C17 C16 HRR sing 158 n y C12 C13 HRR sing 159 n n C12 N11 HRR sing 160 n n C13 C14 HRR doub 161 n y C22 N23 HRR doub 162 n y C22 C10 HRR sing 163 n y N23 C4 HRR sing 164 n y C16 C15 HRR doub 165 n y O3 C2 HRR doub 166 n n C14 C15 HRR sing 167 n y N11 C10 HRR sing 168 n n C10 C6 HRR doub 169 n y C4 C2 HRR sing 170 n n C4 C5 HRR doub 171 n y C2 O1 HRR sing 172 n n C6 C5 HRR sing 173 n y C6 C7 HRR sing 174 n n O9 C7 HRR doub 175 n n C7 O8 HRR sing 176 n n C15 H151 HRR sing 177 n n C17 H171 HRR sing 178 n n C20 H201 HRR sing 179 n n C20 H202 HRR sing 180 n n C21 H212 HRR sing 181 n n C21 H211 HRR sing 182 n n C22 H221 HRR sing 183 n n C5 H051 HRR sing 184 n n C12 H122 HRR sing 185 n n C12 H121 HRR sing 186 n n C14 H141 HRR sing 187 n n C16 H161 HRR sing 188 n n C19 H191 HRR sing 189 n n N11 H111 HRR sing 190 n n O1 H1 HRR sing 191 n n O8 H2 HRR sing 192 n n # _atom_sites.entry_id 7DYX _atom_sites.fract_transf_matrix[1][1] 0.020442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 501 MN MN . C 3 HRR A 1 502 601 HRR LIG . D 4 HOH A 1 601 57 HOH HOH . D 4 HOH A 2 602 40 HOH HOH . D 4 HOH A 3 603 14 HOH HOH . D 4 HOH A 4 604 30 HOH HOH . D 4 HOH A 5 605 28 HOH HOH . D 4 HOH A 6 606 31 HOH HOH . D 4 HOH A 7 607 17 HOH HOH . D 4 HOH A 8 608 27 HOH HOH . D 4 HOH A 9 609 58 HOH HOH . D 4 HOH A 10 610 13 HOH HOH . D 4 HOH A 11 611 38 HOH HOH . D 4 HOH A 12 612 1 HOH HOH . D 4 HOH A 13 613 23 HOH HOH . D 4 HOH A 14 614 11 HOH HOH . D 4 HOH A 15 615 62 HOH HOH . D 4 HOH A 16 616 2 HOH HOH . D 4 HOH A 17 617 3 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 4 HOH HOH . D 4 HOH A 20 620 12 HOH HOH . D 4 HOH A 21 621 55 HOH HOH . D 4 HOH A 22 622 7 HOH HOH . D 4 HOH A 23 623 25 HOH HOH . D 4 HOH A 24 624 42 HOH HOH . D 4 HOH A 25 625 5 HOH HOH . D 4 HOH A 26 626 10 HOH HOH . D 4 HOH A 27 627 26 HOH HOH . D 4 HOH A 28 628 36 HOH HOH . D 4 HOH A 29 629 9 HOH HOH . D 4 HOH A 30 630 20 HOH HOH . D 4 HOH A 31 631 49 HOH HOH . D 4 HOH A 32 632 46 HOH HOH . D 4 HOH A 33 633 16 HOH HOH . D 4 HOH A 34 634 22 HOH HOH . D 4 HOH A 35 635 61 HOH HOH . D 4 HOH A 36 636 45 HOH HOH . D 4 HOH A 37 637 34 HOH HOH . D 4 HOH A 38 638 35 HOH HOH . D 4 HOH A 39 639 15 HOH HOH . D 4 HOH A 40 640 48 HOH HOH . D 4 HOH A 41 641 32 HOH HOH . D 4 HOH A 42 642 41 HOH HOH . D 4 HOH A 43 643 19 HOH HOH . D 4 HOH A 44 644 21 HOH HOH . D 4 HOH A 45 645 56 HOH HOH . D 4 HOH A 46 646 59 HOH HOH . D 4 HOH A 47 647 54 HOH HOH . D 4 HOH A 48 648 37 HOH HOH . D 4 HOH A 49 649 39 HOH HOH . D 4 HOH A 50 650 47 HOH HOH . D 4 HOH A 51 651 44 HOH HOH . D 4 HOH A 52 652 50 HOH HOH . D 4 HOH A 53 653 29 HOH HOH . D 4 HOH A 54 654 53 HOH HOH . D 4 HOH A 55 655 43 HOH HOH . D 4 HOH A 56 656 60 HOH HOH . D 4 HOH A 57 657 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 HRR . . . C 3 -6.62 11.813 -23.818 1 49.37 ? C10 HRR 502 A 1 HETATM 2 C C13 HRR . . . C 3 -3.172 10.365 -24.828 1 60.61 ? C13 HRR 502 A 1 HETATM 3 C C15 HRR . . . C 3 -0.952 11.006 -24.152 1 60.06 ? C15 HRR 502 A 1 HETATM 4 C C17 HRR . . . C 3 -1.318 8.853 -25.177 1 61.06 ? C17 HRR 502 A 1 HETATM 5 C C20 HRR . . . C 3 -4.565 7.161 -25.152 1 59.81 ? C20 HRR 502 A 1 HETATM 6 C C21 HRR . . . C 3 -3.538 6.569 -26.116 1 59.16 ? C21 HRR 502 A 1 HETATM 7 C C22 HRR . . . C 3 -7.491 11.332 -24.79 1 42.54 ? C22 HRR 502 A 1 HETATM 8 C C2 HRR . . . C 3 -10.851 11.749 -23.347 1 32.75 ? C2 HRR 502 A 1 HETATM 9 C C4 HRR . . . C 3 -9.33 11.788 -23.496 1 32.51 ? C4 HRR 502 A 1 HETATM 10 C C5 HRR . . . C 3 -8.524 12.285 -22.473 1 38.05 ? C5 HRR 502 A 1 HETATM 11 C C6 HRR . . . C 3 -7.137 12.306 -22.617 1 48.5 ? C6 HRR 502 A 1 HETATM 12 C C7 HRR . . . C 3 -6.229 12.851 -21.498 1 42.77 ? C7 HRR 502 A 1 HETATM 13 C C12 HRR . . . C 3 -4.685 10.672 -24.965 1 49.12 ? C12 HRR 502 A 1 HETATM 14 C C14 HRR . . . C 3 -2.309 11.295 -24.261 1 62.45 ? C14 HRR 502 A 1 HETATM 15 C C16 HRR . . . C 3 -0.458 9.786 -24.608 1 61.18 ? C16 HRR 502 A 1 HETATM 16 C C18 HRR . . . C 3 -2.674 9.14 -25.286 1 64.37 ? C18 HRR 502 A 1 HETATM 17 C C19 HRR . . . C 3 -3.616 8.088 -25.921 1 59.25 ? C19 HRR 502 A 1 HETATM 18 N N11 HRR . . . C 3 -5.169 11.761 -24.093 1 46.23 ? N11 HRR 502 A 1 HETATM 19 N N23 HRR . . . C 3 -8.8 11.334 -24.613 1 40.57 ? N23 HRR 502 A 1 HETATM 20 O O1 HRR . . . C 3 -11.379 11.893 -22.208 1 49.08 ? O1 HRR 502 A 1 HETATM 21 O O3 HRR . . . C 3 -11.576 11.55 -24.355 1 37.52 -1 O3 HRR 502 A 1 HETATM 22 O O8 HRR . . . C 3 -6.733 13.294 -20.428 1 35.44 ? O8 HRR 502 A 1 HETATM 23 O O9 HRR . . . C 3 -4.974 12.855 -21.643 1 41.32 -1 O9 HRR 502 A 1 HETATM 24 H H151 HRR . . . C 3 -0.275 11.735 -23.71 1 72.07 ? H151 HRR 502 A 1 HETATM 25 H H171 HRR . . . C 3 -0.931 7.901 -25.535 1 73.27 ? H171 HRR 502 A 1 HETATM 26 H H201 HRR . . . C 3 -4.343 7.034 -24.095 1 71.77 ? H201 HRR 502 A 1 HETATM 27 H H202 HRR . . . C 3 -5.596 7.15 -25.501 1 71.77 ? H202 HRR 502 A 1 HETATM 28 H H212 HRR . . . C 3 -2.685 6.079 -25.65 1 70.99 ? H212 HRR 502 A 1 HETATM 29 H H211 HRR . . . C 3 -3.938 6.195 -27.057 1 70.99 ? H211 HRR 502 A 1 HETATM 30 H H221 HRR . . . C 3 -7.084 10.944 -25.72 1 51.05 ? H221 HRR 502 A 1 HETATM 31 H H051 HRR . . . C 3 -8.979 12.659 -21.557 1 45.66 ? H051 HRR 502 A 1 HETATM 32 H H122 HRR . . . C 3 -5.241 9.766 -24.721 1 58.95 ? H122 HRR 502 A 1 HETATM 33 H H121 HRR . . . C 3 -4.885 10.949 -26 1 58.95 ? H121 HRR 502 A 1 HETATM 34 H H141 HRR . . . C 3 -2.693 12.246 -23.903 1 74.94 ? H141 HRR 502 A 1 HETATM 35 H H161 HRR . . . C 3 0.604 9.562 -24.519 1 73.42 ? H161 HRR 502 A 1 HETATM 36 H H191 HRR . . . C 3 -4.153 8.533 -26.755 1 71.1 ? H191 HRR 502 A 1 HETATM 37 H H111 HRR . . . C 3 -4.538 12.438 -23.703 1 55.48 ? H111 HRR 502 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 37 #