data_7DZ1 # _model_server_result.job_id wnlgzuOSfoNEyuz3V115YQ _model_server_result.datetime_utc '2025-01-11 04:50:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 7DZ1 # _exptl.entry_id 7DZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 216.236 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-methyl-1-(phenylmethyl)imidazole-2-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.53 _cell.angle_gamma 90 _cell.entry_id 7DZ1 _cell.length_a 103.016 _cell.length_b 79.112 _cell.length_c 67.763 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 83 A HIS 114 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc2 A ND1 HIS 85 A HIS 116 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc3 A OD2 ASP 87 A ASP 118 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc4 A NE2 HIS 148 A HIS 179 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc5 A SG CYS 167 A CYS 198 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc6 A NE2 HIS 209 A HIS 240 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc7 C ZN ZN . A ZN 301 1_555 I O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc8 D ZN ZN . A ZN 302 1_555 E N05 HQ3 . A HQ3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc9 D ZN ZN . A ZN 302 1_555 E O01 HQ3 . A HQ3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc10 D ZN ZN . A ZN 302 1_555 I O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc11 B NE2 HIS 83 B HIS 114 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc12 B ND1 HIS 85 B HIS 116 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc13 B OD2 ASP 87 B ASP 118 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc14 B NE2 HIS 148 B HIS 179 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc15 B SG CYS 167 B CYS 198 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc16 B NE2 HIS 209 B HIS 240 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc17 F ZN ZN . B ZN 301 1_555 J O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc18 G ZN ZN . B ZN 302 1_555 H N05 HQ3 . B HQ3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc19 G ZN ZN . B ZN 302 1_555 J O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? # _chem_comp.formula 'C12 H12 N2 O2' _chem_comp.formula_weight 216.236 _chem_comp.id HQ3 _chem_comp.mon_nstd_flag . _chem_comp.name '5-methyl-1-(phenylmethyl)imidazole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 C07 HQ3 sing 152 n n C10 N09 HQ3 sing 153 n n C10 C11 HQ3 sing 154 n n C16 C11 HQ3 doub 155 n y C16 C15 HQ3 sing 156 n y C07 N09 HQ3 sing 157 n y C07 C06 HQ3 doub 158 n y N09 C04 HQ3 sing 159 n y C11 C12 HQ3 sing 160 n y O03 C02 HQ3 doub 161 n n C15 C14 HQ3 doub 162 n y C06 N05 HQ3 sing 163 n y C04 C02 HQ3 sing 164 n n C04 N05 HQ3 doub 165 n y C02 O01 HQ3 sing 166 n n C12 C13 HQ3 doub 167 n y C14 C13 HQ3 sing 168 n y O01 H1 HQ3 sing 169 n n C06 H2 HQ3 sing 170 n n C08 H3 HQ3 sing 171 n n C08 H4 HQ3 sing 172 n n C08 H5 HQ3 sing 173 n n C10 H6 HQ3 sing 174 n n C10 H7 HQ3 sing 175 n n C12 H8 HQ3 sing 176 n n C13 H9 HQ3 sing 177 n n C14 H10 HQ3 sing 178 n n C15 H11 HQ3 sing 179 n n C16 H12 HQ3 sing 180 n n # _atom_sites.entry_id 7DZ1 _atom_sites.fract_transf_matrix[1][1] 0.009707 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0083 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 301 ZN ZN . D 2 ZN A 1 302 302 ZN ZN . E 3 HQ3 A 1 303 401 HQ3 402 . F 2 ZN B 1 301 303 ZN ZN . G 2 ZN B 1 302 304 ZN ZN . H 3 HQ3 B 1 303 402 HQ3 402 . I 4 HOH A 1 401 13 HOH HOH . I 4 HOH A 2 402 25 HOH HOH . I 4 HOH A 3 403 19 HOH HOH . I 4 HOH A 4 404 18 HOH HOH . I 4 HOH A 5 405 2 HOH HOH . I 4 HOH A 6 406 12 HOH HOH . I 4 HOH A 7 407 11 HOH HOH . I 4 HOH A 8 408 17 HOH HOH . I 4 HOH A 9 409 26 HOH HOH . I 4 HOH A 10 410 22 HOH HOH . I 4 HOH A 11 411 23 HOH HOH . I 4 HOH A 12 412 24 HOH HOH . J 4 HOH B 1 401 1 HOH HOH . J 4 HOH B 2 402 14 HOH HOH . J 4 HOH B 3 403 4 HOH HOH . J 4 HOH B 4 404 10 HOH HOH . J 4 HOH B 5 405 27 HOH HOH . J 4 HOH B 6 406 9 HOH HOH . J 4 HOH B 7 407 5 HOH HOH . J 4 HOH B 8 408 20 HOH HOH . J 4 HOH B 9 409 7 HOH HOH . J 4 HOH B 10 410 16 HOH HOH . J 4 HOH B 11 411 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 HQ3 . . . E 3 28.545 17.128 -7.949 1 9.8 ? O01 HQ3 303 A 1 HETATM 2 C C02 HQ3 . . . E 3 29.147 17.67 -8.885 1 17.9 ? C02 HQ3 303 A 1 HETATM 3 O O03 HQ3 . . . E 3 28.589 18.616 -9.472 1 16.47 -1 O03 HQ3 303 A 1 HETATM 4 C C04 HQ3 . . . E 3 30.534 17.15 -9.259 1 19.82 ? C04 HQ3 303 A 1 HETATM 5 N N05 HQ3 . . . E 3 30.989 16.024 -8.775 1 16.77 ? N05 HQ3 303 A 1 HETATM 6 C C06 HQ3 . . . E 3 32.201 15.856 -9.277 1 9.46 ? C06 HQ3 303 A 1 HETATM 7 C C07 HQ3 . . . E 3 32.495 16.912 -10.089 1 5.42 ? C07 HQ3 303 A 1 HETATM 8 C C08 HQ3 . . . E 3 33.78 17.126 -10.867 1 4.13 ? C08 HQ3 303 A 1 HETATM 9 N N09 HQ3 . . . E 3 31.453 17.684 -10.056 1 10.48 ? N09 HQ3 303 A 1 HETATM 10 C C10 HQ3 . . . E 3 31.395 18.929 -10.779 1 8.52 ? C10 HQ3 303 A 1 HETATM 11 C C11 HQ3 . . . E 3 31.817 20.07 -9.847 1 7.54 ? C11 HQ3 303 A 1 HETATM 12 C C12 HQ3 . . . E 3 32.223 19.802 -8.553 1 12.22 ? C12 HQ3 303 A 1 HETATM 13 C C13 HQ3 . . . E 3 32.594 20.826 -7.701 1 11.12 ? C13 HQ3 303 A 1 HETATM 14 C C14 HQ3 . . . E 3 32.565 22.133 -8.14 1 15.64 ? C14 HQ3 303 A 1 HETATM 15 C C15 HQ3 . . . E 3 32.172 22.403 -9.426 1 6.37 ? C15 HQ3 303 A 1 HETATM 16 C C16 HQ3 . . . E 3 31.806 21.382 -10.276 1 10.91 ? C16 HQ3 303 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 380 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #