data_7DZ6 # _model_server_result.job_id N9sIvJEo2Bv8u_EHK5JXdw _model_server_result.datetime_utc '2024-10-19 21:44:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 7DZ6 # _exptl.entry_id 7DZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-psicose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.387 _cell.angle_gamma 90 _cell.entry_id 7DZ6 _cell.length_a 62.558 _cell.length_b 87.141 _cell.length_c 128.881 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 146 A GLU 146 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 A OD2 ASP 179 A ASP 179 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc3 A OE1 GLU 240 A GLU 240 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc4 B OE2 GLU 146 B GLU 146 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc5 B OD2 ASP 179 B ASP 179 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc6 B OE1 GLU 240 B GLU 240 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc7 F MG MG . B MG 301 1_555 L O HOH . B HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc8 C OE2 GLU 146 C GLU 146 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc9 C OD2 ASP 179 C ASP 179 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc10 C OE1 GLU 240 C GLU 240 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc11 G O2 PSJ . C PSJ 301 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc12 G O3 PSJ . C PSJ 301 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc13 D OE2 GLU 146 D GLU 146 1_555 J MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc14 D OD2 ASP 179 D ASP 179 1_555 J MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc15 D OE1 GLU 240 D GLU 240 1_555 J MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc16 I O2 PSJ . D PSJ 301 1_555 J MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc17 I O3 PSJ . D PSJ 301 1_555 J MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id PSJ _chem_comp.mon_nstd_flag . _chem_comp.name D-psicose _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PSJ sing 277 n n C1 C2 PSJ sing 278 n n C1 H11 PSJ sing 279 n n C1 H12 PSJ sing 280 n n O1 HO1 PSJ sing 281 n n C3 C2 PSJ sing 282 n n C2 O2 PSJ doub 283 n n C4 C3 PSJ sing 284 n n C3 O3 PSJ sing 285 n n C3 H3 PSJ sing 286 n n O3 HO3 PSJ sing 287 n n O4 C4 PSJ sing 288 n n C4 C5 PSJ sing 289 n n C4 H4 PSJ sing 290 n n O4 HO4 PSJ sing 291 n n C6 C5 PSJ sing 292 n n C5 O5 PSJ sing 293 n n C5 H5 PSJ sing 294 n n O5 HO5 PSJ sing 295 n n O6 C6 PSJ sing 296 n n C6 H61 PSJ sing 297 n n C6 H62 PSJ sing 298 n n O6 HO6 PSJ sing 299 n n # _atom_sites.entry_id 7DZ6 _atom_sites.fract_transf_matrix[1][1] 0.015985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002643 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 301 301 MG MG . F 2 MG B 1 301 301 MG MG . G 3 PSJ C 1 301 301 PSJ PSJ . H 2 MG C 1 302 302 MG MG . I 3 PSJ D 1 301 301 PSJ PSJ . J 2 MG D 1 302 302 MG MG . K 4 HOH A 1 401 401 HOH HOH . K 4 HOH A 2 402 402 HOH HOH . K 4 HOH A 3 403 406 HOH HOH . K 4 HOH A 4 404 403 HOH HOH . K 4 HOH A 5 405 405 HOH HOH . K 4 HOH A 6 406 403 HOH HOH . K 4 HOH A 7 407 404 HOH HOH . K 4 HOH A 8 408 408 HOH HOH . K 4 HOH A 9 409 407 HOH HOH . K 4 HOH A 10 410 409 HOH HOH . K 4 HOH A 11 411 411 HOH HOH . K 4 HOH A 12 412 410 HOH HOH . K 4 HOH A 13 413 412 HOH HOH . K 4 HOH A 14 414 416 HOH HOH . K 4 HOH A 15 415 413 HOH HOH . K 4 HOH A 16 416 414 HOH HOH . K 4 HOH A 17 417 415 HOH HOH . K 4 HOH A 18 418 417 HOH HOH . K 4 HOH A 19 419 419 HOH HOH . K 4 HOH A 20 420 418 HOH HOH . K 4 HOH A 21 421 420 HOH HOH . K 4 HOH A 22 422 421 HOH HOH . K 4 HOH A 23 423 422 HOH HOH . K 4 HOH A 24 424 425 HOH HOH . K 4 HOH A 25 425 424 HOH HOH . K 4 HOH A 26 426 423 HOH HOH . K 4 HOH A 27 427 427 HOH HOH . K 4 HOH A 28 428 426 HOH HOH . K 4 HOH A 29 429 428 HOH HOH . K 4 HOH A 30 430 429 HOH HOH . K 4 HOH A 31 431 430 HOH HOH . K 4 HOH A 32 432 431 HOH HOH . K 4 HOH A 33 433 432 HOH HOH . K 4 HOH A 34 434 433 HOH HOH . K 4 HOH A 35 435 434 HOH HOH . K 4 HOH A 36 436 435 HOH HOH . K 4 HOH A 37 437 436 HOH HOH . K 4 HOH A 38 438 438 HOH HOH . K 4 HOH A 39 439 437 HOH HOH . K 4 HOH A 40 440 439 HOH HOH . K 4 HOH A 41 441 440 HOH HOH . K 4 HOH A 42 442 441 HOH HOH . K 4 HOH A 43 443 442 HOH HOH . L 4 HOH B 1 401 401 HOH HOH . L 4 HOH B 2 402 403 HOH HOH . L 4 HOH B 3 403 404 HOH HOH . L 4 HOH B 4 404 402 HOH HOH . L 4 HOH B 5 405 405 HOH HOH . L 4 HOH B 6 406 406 HOH HOH . L 4 HOH B 7 407 407 HOH HOH . L 4 HOH B 8 408 408 HOH HOH . L 4 HOH B 9 409 409 HOH HOH . L 4 HOH B 10 410 410 HOH HOH . L 4 HOH B 11 411 412 HOH HOH . L 4 HOH B 12 412 415 HOH HOH . L 4 HOH B 13 413 413 HOH HOH . L 4 HOH B 14 414 411 HOH HOH . L 4 HOH B 15 415 414 HOH HOH . L 4 HOH B 16 416 416 HOH HOH . L 4 HOH B 17 417 418 HOH HOH . L 4 HOH B 18 418 417 HOH HOH . L 4 HOH B 19 419 419 HOH HOH . L 4 HOH B 20 420 420 HOH HOH . L 4 HOH B 21 421 421 HOH HOH . L 4 HOH B 22 422 424 HOH HOH . L 4 HOH B 23 423 422 HOH HOH . L 4 HOH B 24 424 423 HOH HOH . L 4 HOH B 25 425 426 HOH HOH . L 4 HOH B 26 426 425 HOH HOH . L 4 HOH B 27 427 428 HOH HOH . L 4 HOH B 28 428 427 HOH HOH . L 4 HOH B 29 429 430 HOH HOH . L 4 HOH B 30 430 429 HOH HOH . L 4 HOH B 31 431 431 HOH HOH . L 4 HOH B 32 432 432 HOH HOH . L 4 HOH B 33 433 433 HOH HOH . M 4 HOH C 1 401 401 HOH HOH . M 4 HOH C 2 402 402 HOH HOH . M 4 HOH C 3 403 406 HOH HOH . M 4 HOH C 4 404 405 HOH HOH . M 4 HOH C 5 405 404 HOH HOH . M 4 HOH C 6 406 408 HOH HOH . M 4 HOH C 7 407 407 HOH HOH . M 4 HOH C 8 408 410 HOH HOH . M 4 HOH C 9 409 409 HOH HOH . M 4 HOH C 10 410 413 HOH HOH . M 4 HOH C 11 411 416 HOH HOH . M 4 HOH C 12 412 411 HOH HOH . M 4 HOH C 13 413 418 HOH HOH . M 4 HOH C 14 414 414 HOH HOH . M 4 HOH C 15 415 412 HOH HOH . M 4 HOH C 16 416 422 HOH HOH . M 4 HOH C 17 417 419 HOH HOH . M 4 HOH C 18 418 415 HOH HOH . M 4 HOH C 19 419 420 HOH HOH . M 4 HOH C 20 420 423 HOH HOH . M 4 HOH C 21 421 421 HOH HOH . M 4 HOH C 22 422 425 HOH HOH . M 4 HOH C 23 423 427 HOH HOH . M 4 HOH C 24 424 424 HOH HOH . M 4 HOH C 25 425 428 HOH HOH . M 4 HOH C 26 426 429 HOH HOH . M 4 HOH C 27 427 430 HOH HOH . M 4 HOH C 28 428 417 HOH HOH . M 4 HOH C 29 429 426 HOH HOH . M 4 HOH C 30 430 433 HOH HOH . M 4 HOH C 31 431 432 HOH HOH . M 4 HOH C 32 432 434 HOH HOH . M 4 HOH C 33 433 431 HOH HOH . M 4 HOH C 34 434 435 HOH HOH . M 4 HOH C 35 435 436 HOH HOH . M 4 HOH C 36 436 437 HOH HOH . M 4 HOH C 37 437 443 HOH HOH . M 4 HOH C 38 438 445 HOH HOH . M 4 HOH C 39 439 438 HOH HOH . M 4 HOH C 40 440 440 HOH HOH . M 4 HOH C 41 441 442 HOH HOH . M 4 HOH C 42 442 441 HOH HOH . M 4 HOH C 43 443 444 HOH HOH . M 4 HOH C 44 444 439 HOH HOH . M 4 HOH C 45 445 446 HOH HOH . M 4 HOH C 46 446 447 HOH HOH . M 4 HOH C 47 447 448 HOH HOH . M 4 HOH C 48 448 449 HOH HOH . M 4 HOH C 49 449 450 HOH HOH . M 4 HOH C 50 450 451 HOH HOH . M 4 HOH C 51 451 452 HOH HOH . N 4 HOH D 1 401 401 HOH HOH . N 4 HOH D 2 402 402 HOH HOH . N 4 HOH D 3 403 403 HOH HOH . N 4 HOH D 4 404 404 HOH HOH . N 4 HOH D 5 405 405 HOH HOH . N 4 HOH D 6 406 406 HOH HOH . N 4 HOH D 7 407 411 HOH HOH . N 4 HOH D 8 408 409 HOH HOH . N 4 HOH D 9 409 410 HOH HOH . N 4 HOH D 10 410 407 HOH HOH . N 4 HOH D 11 411 413 HOH HOH . N 4 HOH D 12 412 414 HOH HOH . N 4 HOH D 13 413 408 HOH HOH . N 4 HOH D 14 414 427 HOH HOH . N 4 HOH D 15 415 412 HOH HOH . N 4 HOH D 16 416 415 HOH HOH . N 4 HOH D 17 417 417 HOH HOH . N 4 HOH D 18 418 416 HOH HOH . N 4 HOH D 19 419 418 HOH HOH . N 4 HOH D 20 420 419 HOH HOH . N 4 HOH D 21 421 422 HOH HOH . N 4 HOH D 22 422 421 HOH HOH . N 4 HOH D 23 423 420 HOH HOH . N 4 HOH D 24 424 425 HOH HOH . N 4 HOH D 25 425 423 HOH HOH . N 4 HOH D 26 426 424 HOH HOH . N 4 HOH D 27 427 426 HOH HOH . N 4 HOH D 28 428 428 HOH HOH . N 4 HOH D 29 429 430 HOH HOH . N 4 HOH D 30 430 429 HOH HOH . N 4 HOH D 31 431 431 HOH HOH . N 4 HOH D 32 432 432 HOH HOH . N 4 HOH D 33 433 433 HOH HOH . N 4 HOH D 34 434 434 HOH HOH . N 4 HOH D 35 435 435 HOH HOH . N 4 HOH D 36 436 436 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PSJ . . . I 3 10.25 -11.198 -16.791 1 45.03 ? C1 PSJ 301 D 1 HETATM 2 O O1 PSJ . . . I 3 10.488 -9.89 -16.43 1 37.36 ? O1 PSJ 301 D 1 HETATM 3 C C2 PSJ . . . I 3 11.023 -11.402 -18.11 1 50.53 ? C2 PSJ 301 D 1 HETATM 4 O O2 PSJ . . . I 3 10.546 -10.989 -19.185 1 42.14 ? O2 PSJ 301 D 1 HETATM 5 C C3 PSJ . . . I 3 12.44 -12.011 -18.077 1 46.98 ? C3 PSJ 301 D 1 HETATM 6 O O3 PSJ . . . I 3 12.544 -12.74 -19.29 1 53 ? O3 PSJ 301 D 1 HETATM 7 C C4 PSJ . . . I 3 12.919 -12.893 -16.965 1 54.45 ? C4 PSJ 301 D 1 HETATM 8 O O4 PSJ . . . I 3 14.24 -12.34 -16.837 1 57.05 ? O4 PSJ 301 D 1 HETATM 9 C C5 PSJ . . . I 3 13.108 -14.387 -17.216 1 54.08 ? C5 PSJ 301 D 1 HETATM 10 O O5 PSJ . . . I 3 11.91 -15.068 -17.035 1 56.82 ? O5 PSJ 301 D 1 HETATM 11 C C6 PSJ . . . I 3 14.122 -15.067 -16.231 1 56.81 ? C6 PSJ 301 D 1 HETATM 12 O O6 PSJ . . . I 3 14.077 -16.484 -16.555 1 55.41 ? O6 PSJ 301 D 1 HETATM 13 H H11 PSJ . . . I 3 9.222 -11.357 -16.938 1 54.08 ? H11 PSJ 301 D 1 HETATM 14 H H12 PSJ . . . I 3 10.604 -11.854 -16.052 1 54.08 ? H12 PSJ 301 D 1 HETATM 15 H HO1 PSJ . . . I 3 9.719 -9.537 -16.046 1 44.87 ? HO1 PSJ 301 D 1 HETATM 16 H H3 PSJ . . . I 3 13.099 -11.126 -17.908 1 56.42 ? H3 PSJ 301 D 1 HETATM 17 H HO3 PSJ . . . I 3 13.483 -12.862 -19.529 1 63.64 ? HO3 PSJ 301 D 1 HETATM 18 H H4 PSJ . . . I 3 12.194 -12.887 -16.145 1 65.38 ? H4 PSJ 301 D 1 HETATM 19 H HO4 PSJ . . . I 3 14.28 -11.721 -16.119 1 68.5 ? HO4 PSJ 301 D 1 HETATM 20 H H5 PSJ . . . I 3 13.486 -14.449 -18.246 1 64.93 ? H5 PSJ 301 D 1 HETATM 21 H HO5 PSJ . . . I 3 11.226 -14.653 -17.571 1 68.23 ? HO5 PSJ 301 D 1 HETATM 22 H H61 PSJ . . . I 3 13.822 -14.902 -15.203 1 68.22 ? H61 PSJ 301 D 1 HETATM 23 H H62 PSJ . . . I 3 15.12 -14.674 -16.382 1 68.22 ? H62 PSJ 301 D 1 HETATM 24 H HO6 PSJ . . . I 3 14.804 -16.962 -16.065 1 66.53 ? HO6 PSJ 301 D 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #