data_7E00 # _model_server_result.job_id NfZ-sq-j1UirUnO_ty07Zg _model_server_result.datetime_utc '2024-11-26 14:50:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 7E00 # _exptl.entry_id 7E00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E00 _cell.length_a 106.367 _cell.length_b 106.367 _cell.length_c 143.924 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 305 n n C1 O2 SIN sing 306 n n C1 C2 SIN sing 307 n n O2 HO2 SIN sing 308 n n C2 C3 SIN sing 309 n n C2 H21 SIN sing 310 n n C2 H22 SIN sing 311 n n C3 C4 SIN sing 312 n n C3 H31 SIN sing 313 n n C3 H32 SIN sing 314 n n C4 O3 SIN doub 315 n n C4 O4 SIN sing 316 n n O4 HO4 SIN sing 317 n n # _atom_sites.entry_id 7E00 _atom_sites.fract_transf_matrix[1][1] 0.009401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PRO A 1 601 601 PRO PRO . D 3 SIN A 1 602 602 SIN SIN . E 4 AKG A 1 603 603 AKG AKG . F 2 PRO B 1 701 701 PRO PRO . G 3 SIN B 1 702 702 SIN SIN . H 5 O B 1 703 703 O O . I 6 HOH A 1 701 401 HOH HOH . I 6 HOH A 2 702 402 HOH HOH . I 6 HOH A 3 703 403 HOH HOH . I 6 HOH A 4 704 404 HOH HOH . I 6 HOH A 5 705 405 HOH HOH . I 6 HOH A 6 706 406 HOH HOH . I 6 HOH A 7 707 407 HOH HOH . I 6 HOH A 8 708 408 HOH HOH . I 6 HOH A 9 709 409 HOH HOH . I 6 HOH A 10 710 410 HOH HOH . I 6 HOH A 11 711 411 HOH HOH . I 6 HOH A 12 712 412 HOH HOH . I 6 HOH A 13 713 413 HOH HOH . I 6 HOH A 14 714 414 HOH HOH . I 6 HOH A 15 715 415 HOH HOH . I 6 HOH A 16 716 416 HOH HOH . I 6 HOH A 17 717 417 HOH HOH . I 6 HOH A 18 718 418 HOH HOH . I 6 HOH A 19 719 419 HOH HOH . I 6 HOH A 20 720 420 HOH HOH . I 6 HOH A 21 721 421 HOH HOH . I 6 HOH A 22 722 422 HOH HOH . I 6 HOH A 23 723 423 HOH HOH . I 6 HOH A 24 724 424 HOH HOH . I 6 HOH A 25 725 425 HOH HOH . I 6 HOH A 26 726 426 HOH HOH . I 6 HOH A 27 727 427 HOH HOH . I 6 HOH A 28 728 428 HOH HOH . I 6 HOH A 29 729 429 HOH HOH . I 6 HOH A 30 730 430 HOH HOH . I 6 HOH A 31 731 431 HOH HOH . I 6 HOH A 32 732 432 HOH HOH . I 6 HOH A 33 733 433 HOH HOH . I 6 HOH A 34 734 434 HOH HOH . I 6 HOH A 35 735 435 HOH HOH . I 6 HOH A 36 736 436 HOH HOH . I 6 HOH A 37 737 437 HOH HOH . I 6 HOH A 38 738 438 HOH HOH . I 6 HOH A 39 739 439 HOH HOH . I 6 HOH A 40 740 440 HOH HOH . I 6 HOH A 41 741 441 HOH HOH . I 6 HOH A 42 742 442 HOH HOH . I 6 HOH A 43 743 443 HOH HOH . I 6 HOH A 44 744 444 HOH HOH . I 6 HOH A 45 745 445 HOH HOH . I 6 HOH A 46 746 446 HOH HOH . I 6 HOH A 47 747 447 HOH HOH . I 6 HOH A 48 748 448 HOH HOH . I 6 HOH A 49 749 449 HOH HOH . I 6 HOH A 50 750 450 HOH HOH . I 6 HOH A 51 751 451 HOH HOH . I 6 HOH A 52 752 452 HOH HOH . I 6 HOH A 53 753 453 HOH HOH . I 6 HOH A 54 754 454 HOH HOH . I 6 HOH A 55 755 455 HOH HOH . I 6 HOH A 56 756 456 HOH HOH . I 6 HOH A 57 757 457 HOH HOH . I 6 HOH A 58 758 458 HOH HOH . I 6 HOH A 59 759 459 HOH HOH . I 6 HOH A 60 760 460 HOH HOH . I 6 HOH A 61 761 461 HOH HOH . I 6 HOH A 62 762 462 HOH HOH . I 6 HOH A 63 763 463 HOH HOH . I 6 HOH A 64 764 464 HOH HOH . I 6 HOH A 65 765 465 HOH HOH . I 6 HOH A 66 766 466 HOH HOH . I 6 HOH A 67 767 467 HOH HOH . I 6 HOH A 68 768 468 HOH HOH . I 6 HOH A 69 769 469 HOH HOH . I 6 HOH A 70 770 470 HOH HOH . I 6 HOH A 71 771 471 HOH HOH . I 6 HOH A 72 772 472 HOH HOH . I 6 HOH A 73 773 473 HOH HOH . I 6 HOH A 74 774 474 HOH HOH . I 6 HOH A 75 775 475 HOH HOH . I 6 HOH A 76 776 476 HOH HOH . I 6 HOH A 77 777 477 HOH HOH . I 6 HOH A 78 778 478 HOH HOH . I 6 HOH A 79 779 479 HOH HOH . I 6 HOH A 80 780 480 HOH HOH . I 6 HOH A 81 781 481 HOH HOH . I 6 HOH A 82 782 482 HOH HOH . I 6 HOH A 83 783 483 HOH HOH . I 6 HOH A 84 784 484 HOH HOH . I 6 HOH A 85 785 485 HOH HOH . I 6 HOH A 86 786 486 HOH HOH . I 6 HOH A 87 787 487 HOH HOH . I 6 HOH A 88 788 488 HOH HOH . I 6 HOH A 89 789 489 HOH HOH . I 6 HOH A 90 790 490 HOH HOH . I 6 HOH A 91 791 491 HOH HOH . I 6 HOH A 92 792 492 HOH HOH . I 6 HOH A 93 793 493 HOH HOH . I 6 HOH A 94 794 494 HOH HOH . I 6 HOH A 95 795 495 HOH HOH . I 6 HOH A 96 796 496 HOH HOH . I 6 HOH A 97 797 497 HOH HOH . I 6 HOH A 98 798 498 HOH HOH . I 6 HOH A 99 799 499 HOH HOH . J 6 HOH B 1 801 401 HOH HOH . J 6 HOH B 2 802 402 HOH HOH . J 6 HOH B 3 803 403 HOH HOH . J 6 HOH B 4 804 404 HOH HOH . J 6 HOH B 5 805 405 HOH HOH . J 6 HOH B 6 806 406 HOH HOH . J 6 HOH B 7 807 407 HOH HOH . J 6 HOH B 8 808 408 HOH HOH . J 6 HOH B 9 809 409 HOH HOH . J 6 HOH B 10 810 410 HOH HOH . J 6 HOH B 11 811 411 HOH HOH . J 6 HOH B 12 812 412 HOH HOH . J 6 HOH B 13 813 413 HOH HOH . J 6 HOH B 14 814 414 HOH HOH . J 6 HOH B 15 815 415 HOH HOH . J 6 HOH B 16 816 416 HOH HOH . J 6 HOH B 17 817 417 HOH HOH . J 6 HOH B 18 818 418 HOH HOH . J 6 HOH B 19 819 419 HOH HOH . J 6 HOH B 20 820 420 HOH HOH . J 6 HOH B 21 821 421 HOH HOH . J 6 HOH B 22 822 422 HOH HOH . J 6 HOH B 23 823 423 HOH HOH . J 6 HOH B 24 824 424 HOH HOH . J 6 HOH B 25 825 425 HOH HOH . J 6 HOH B 26 826 426 HOH HOH . J 6 HOH B 27 827 427 HOH HOH . J 6 HOH B 28 828 428 HOH HOH . J 6 HOH B 29 829 429 HOH HOH . J 6 HOH B 30 830 430 HOH HOH . J 6 HOH B 31 831 431 HOH HOH . J 6 HOH B 32 832 432 HOH HOH . J 6 HOH B 33 833 433 HOH HOH . J 6 HOH B 34 834 434 HOH HOH . J 6 HOH B 35 835 435 HOH HOH . J 6 HOH B 36 836 436 HOH HOH . J 6 HOH B 37 837 437 HOH HOH . J 6 HOH B 38 838 438 HOH HOH . J 6 HOH B 39 839 439 HOH HOH . J 6 HOH B 40 840 440 HOH HOH . J 6 HOH B 41 841 441 HOH HOH . J 6 HOH B 42 842 442 HOH HOH . J 6 HOH B 43 843 443 HOH HOH . J 6 HOH B 44 844 444 HOH HOH . J 6 HOH B 45 845 445 HOH HOH . J 6 HOH B 46 846 446 HOH HOH . J 6 HOH B 47 847 447 HOH HOH . J 6 HOH B 48 848 448 HOH HOH . J 6 HOH B 49 849 449 HOH HOH . J 6 HOH B 50 850 450 HOH HOH . J 6 HOH B 51 851 451 HOH HOH . J 6 HOH B 52 852 452 HOH HOH . J 6 HOH B 53 853 453 HOH HOH . J 6 HOH B 54 854 454 HOH HOH . J 6 HOH B 55 855 455 HOH HOH . J 6 HOH B 56 856 456 HOH HOH . J 6 HOH B 57 857 457 HOH HOH . J 6 HOH B 58 858 458 HOH HOH . J 6 HOH B 59 859 459 HOH HOH . J 6 HOH B 60 860 460 HOH HOH . J 6 HOH B 61 861 461 HOH HOH . J 6 HOH B 62 862 462 HOH HOH . J 6 HOH B 63 863 463 HOH HOH . J 6 HOH B 64 864 464 HOH HOH . J 6 HOH B 65 865 465 HOH HOH . J 6 HOH B 66 866 466 HOH HOH . J 6 HOH B 67 867 467 HOH HOH . J 6 HOH B 68 868 468 HOH HOH . J 6 HOH B 69 869 469 HOH HOH . J 6 HOH B 70 870 470 HOH HOH . J 6 HOH B 71 871 471 HOH HOH . J 6 HOH B 72 872 472 HOH HOH . J 6 HOH B 73 873 473 HOH HOH . J 6 HOH B 74 874 474 HOH HOH . J 6 HOH B 75 875 475 HOH HOH . J 6 HOH B 76 876 476 HOH HOH . J 6 HOH B 77 877 477 HOH HOH . J 6 HOH B 78 878 478 HOH HOH . J 6 HOH B 79 879 479 HOH HOH . J 6 HOH B 80 880 480 HOH HOH . J 6 HOH B 81 881 481 HOH HOH . J 6 HOH B 82 882 482 HOH HOH . J 6 HOH B 83 883 483 HOH HOH . J 6 HOH B 84 884 484 HOH HOH . J 6 HOH B 85 885 485 HOH HOH . J 6 HOH B 86 886 486 HOH HOH . J 6 HOH B 87 887 487 HOH HOH . J 6 HOH B 88 888 488 HOH HOH . J 6 HOH B 89 889 489 HOH HOH . J 6 HOH B 90 890 490 HOH HOH . J 6 HOH B 91 891 491 HOH HOH . J 6 HOH B 92 892 492 HOH HOH . J 6 HOH B 93 893 493 HOH HOH . J 6 HOH B 94 894 494 HOH HOH . J 6 HOH B 95 895 495 HOH HOH . J 6 HOH B 96 896 496 HOH HOH . J 6 HOH B 97 897 497 HOH HOH . J 6 HOH B 98 898 498 HOH HOH . J 6 HOH B 99 899 499 HOH HOH . J 6 HOH B 100 900 500 HOH HOH . J 6 HOH B 101 901 501 HOH HOH . J 6 HOH B 102 902 502 HOH HOH . J 6 HOH B 103 903 503 HOH HOH . J 6 HOH B 104 904 504 HOH HOH . J 6 HOH B 105 905 505 HOH HOH . J 6 HOH B 106 906 506 HOH HOH . J 6 HOH B 107 907 507 HOH HOH . J 6 HOH B 108 908 508 HOH HOH . J 6 HOH B 109 909 509 HOH HOH . J 6 HOH B 110 910 510 HOH HOH . J 6 HOH B 111 911 511 HOH HOH . J 6 HOH B 112 912 512 HOH HOH . J 6 HOH B 113 913 513 HOH HOH . J 6 HOH B 114 914 514 HOH HOH . J 6 HOH B 115 915 515 HOH HOH . J 6 HOH B 116 916 516 HOH HOH . J 6 HOH B 117 917 517 HOH HOH . J 6 HOH B 118 918 518 HOH HOH . J 6 HOH B 119 919 519 HOH HOH . J 6 HOH B 120 920 520 HOH HOH . J 6 HOH B 121 921 521 HOH HOH . J 6 HOH B 122 922 522 HOH HOH . J 6 HOH B 123 923 523 HOH HOH . J 6 HOH B 124 924 524 HOH HOH . J 6 HOH B 125 925 525 HOH HOH . J 6 HOH B 126 926 526 HOH HOH . J 6 HOH B 127 927 527 HOH HOH . J 6 HOH B 128 928 528 HOH HOH . J 6 HOH B 129 929 529 HOH HOH . J 6 HOH B 130 930 530 HOH HOH . J 6 HOH B 131 931 531 HOH HOH . J 6 HOH B 132 932 532 HOH HOH . J 6 HOH B 133 933 533 HOH HOH . J 6 HOH B 134 934 534 HOH HOH . J 6 HOH B 135 935 535 HOH HOH . J 6 HOH B 136 936 536 HOH HOH . J 6 HOH B 137 937 537 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . D 3 44.843 25.519 62.349 1 72.59 ? C1 SIN 602 A 1 HETATM 2 O O1 SIN . . . D 3 44.7 25.182 61.116 1 60.79 ? O1 SIN 602 A 1 HETATM 3 O O2 SIN . . . D 3 45.881 26.079 62.861 1 63 ? O2 SIN 602 A 1 HETATM 4 C C2 SIN . . . D 3 43.706 25.226 63.319 1 64.02 ? C2 SIN 602 A 1 HETATM 5 C C3 SIN . . . D 3 43.282 26.517 64.049 1 62.88 ? C3 SIN 602 A 1 HETATM 6 C C4 SIN . . . D 3 43.131 26.271 65.554 1 74.21 ? C4 SIN 602 A 1 HETATM 7 O O3 SIN . . . D 3 42.139 26.768 66.163 1 58.44 ? O3 SIN 602 A 1 HETATM 8 O O4 SIN . . . D 3 43.959 25.57 66.199 1 71.61 ? O4 SIN 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #