data_7E09 # _model_server_result.job_id 9nCflamojViG8hZ9QVBxWw _model_server_result.datetime_utc '2024-11-15 10:02:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7E09 # _exptl.entry_id 7E09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.13 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-HYDROXYPROLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E09 _cell.length_a 75.39 _cell.length_b 75.39 _cell.length_c 143.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -75.39 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H9 N O3' _chem_comp.formula_weight 131.13 _chem_comp.id HY3 _chem_comp.mon_nstd_flag n _chem_comp.name 3-HYDROXYPROLINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms '(2S,3S)-3-hydroxypyrrolidine-2-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O HY3 doub 152 n n C CA HY3 sing 153 n n C OXT HY3 sing 154 n n N CA HY3 sing 155 n n N C5 HY3 sing 156 n n N H HY3 sing 157 n n CA C3 HY3 sing 158 n n CA HA HY3 sing 159 n n C3 C4 HY3 sing 160 n n C3 O2 HY3 sing 161 n n C3 HB HY3 sing 162 n n C4 C5 HY3 sing 163 n n C4 HG HY3 sing 164 n n C4 HGA HY3 sing 165 n n C5 HD HY3 sing 166 n n C5 HDA HY3 sing 167 n n O2 HO1 HY3 sing 168 n n OXT HXT HY3 sing 169 n n # _atom_sites.entry_id 7E09 _atom_sites.fract_transf_matrix[1][1] 0.013264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HY3 A 1 301 301 HY3 HY3 . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 402 HOH HOH . C 3 HOH A 3 403 403 HOH HOH . C 3 HOH A 4 404 404 HOH HOH . C 3 HOH A 5 405 405 HOH HOH . C 3 HOH A 6 406 406 HOH HOH . C 3 HOH A 7 407 407 HOH HOH . C 3 HOH A 8 408 408 HOH HOH . C 3 HOH A 9 409 409 HOH HOH . C 3 HOH A 10 410 410 HOH HOH . C 3 HOH A 11 411 411 HOH HOH . C 3 HOH A 12 412 412 HOH HOH . C 3 HOH A 13 413 413 HOH HOH . C 3 HOH A 14 414 414 HOH HOH . C 3 HOH A 15 415 415 HOH HOH . C 3 HOH A 16 416 416 HOH HOH . C 3 HOH A 17 417 417 HOH HOH . C 3 HOH A 18 418 418 HOH HOH . C 3 HOH A 19 419 419 HOH HOH . C 3 HOH A 20 420 420 HOH HOH . C 3 HOH A 21 421 421 HOH HOH . C 3 HOH A 22 422 422 HOH HOH . C 3 HOH A 23 423 423 HOH HOH . C 3 HOH A 24 424 424 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C HY3 . . . B 2 -22.289 14.194 -13.463 1 68.03 ? C HY3 301 A 1 HETATM 2 O O HY3 . . . B 2 -21.324 13.983 -14.206 1 58.8 ? O HY3 301 A 1 HETATM 3 N N HY3 . . . B 2 -23.557 13.754 -11.367 1 67.16 ? N HY3 301 A 1 HETATM 4 C CA HY3 . . . B 2 -22.575 13.262 -12.324 1 71.43 ? CA HY3 301 A 1 HETATM 5 C C3 HY3 . . . B 2 -23.276 12.046 -12.905 1 68.01 ? C3 HY3 301 A 1 HETATM 6 C C4 HY3 . . . B 2 -24.739 12.491 -12.952 1 60.86 ? C4 HY3 301 A 1 HETATM 7 C C5 HY3 . . . B 2 -24.904 13.343 -11.686 1 59.39 ? C5 HY3 301 A 1 HETATM 8 O O2 HY3 . . . B 2 -23.071 10.937 -12.008 1 65.01 ? O2 HY3 301 A 1 HETATM 9 O OXT HY3 . . . B 2 -23.052 15.148 -13.645 1 70.83 ? OXT HY3 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #