data_7E0P
#
_model_server_result.job_id            kb53WtLR86YNLqQC6WnCNQ 
_model_server_result.datetime_utc      '2024-11-05 16:27:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7e0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    7E0P 
#
_exptl.entry_id    7E0P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7E0P 
_cell.length_a            85.746 
_cell.length_b            91.561 
_cell.length_c            126.767 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7E0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 297 A CYS 308 1_555 B SG CYS 297 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc1 A NE2 HIS 335 A HIS 346 1_555 D FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc2 C N07 HU0 . A HU0 501 1_555 D FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc3 B NE2 HIS 335 B HIS 346 1_555 F FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc4 E N07 HU0 . B HU0 501 1_555 F FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 136 n n 
CHA C4D HEM doub 137 n n 
CHA HHA HEM sing 138 n n 
CHB C4A HEM sing 139 n n 
CHB C1B HEM doub 140 n n 
CHB HHB HEM sing 141 n n 
CHC C4B HEM sing 142 n n 
CHC C1C HEM doub 143 n n 
CHC HHC HEM sing 144 n n 
CHD C4C HEM doub 145 n n 
CHD C1D HEM sing 146 n n 
CHD HHD HEM sing 147 n n 
C1A C2A HEM doub 148 n y 
C1A NA HEM sing 149 n y 
C2A C3A HEM sing 150 n y 
C2A CAA HEM sing 151 n n 
C3A C4A HEM doub 152 n y 
C3A CMA HEM sing 153 n n 
C4A NA HEM sing 154 n y 
CMA HMA HEM sing 155 n n 
CMA HMAA HEM sing 156 n n 
CMA HMAB HEM sing 157 n n 
CAA CBA HEM sing 158 n n 
CAA HAA HEM sing 159 n n 
CAA HAAA HEM sing 160 n n 
CBA CGA HEM sing 161 n n 
CBA HBA HEM sing 162 n n 
CBA HBAA HEM sing 163 n n 
CGA O1A HEM doub 164 n n 
CGA O2A HEM sing 165 n n 
C1B C2B HEM sing 166 n n 
C1B NB HEM sing 167 n n 
C2B C3B HEM doub 168 n n 
C2B CMB HEM sing 169 n n 
C3B C4B HEM sing 170 n n 
C3B CAB HEM sing 171 n n 
C4B NB HEM doub 172 n n 
CMB HMB HEM sing 173 n n 
CMB HMBA HEM sing 174 n n 
CMB HMBB HEM sing 175 n n 
CAB CBB HEM doub 176 n n 
CAB HAB HEM sing 177 n n 
CBB HBB HEM sing 178 n n 
CBB HBBA HEM sing 179 n n 
C1C C2C HEM sing 180 n y 
C1C NC HEM sing 181 n y 
C2C C3C HEM doub 182 n y 
C2C CMC HEM sing 183 n n 
C3C C4C HEM sing 184 n y 
C3C CAC HEM sing 185 n n 
C4C NC HEM sing 186 n y 
CMC HMC HEM sing 187 n n 
CMC HMCA HEM sing 188 n n 
CMC HMCB HEM sing 189 n n 
CAC CBC HEM doub 190 n n 
CAC HAC HEM sing 191 n n 
CBC HBC HEM sing 192 n n 
CBC HBCA HEM sing 193 n n 
C1D C2D HEM sing 194 n n 
C1D ND HEM doub 195 n n 
C2D C3D HEM doub 196 n n 
C2D CMD HEM sing 197 n n 
C3D C4D HEM sing 198 n n 
C3D CAD HEM sing 199 n n 
C4D ND HEM sing 200 n n 
CMD HMD HEM sing 201 n n 
CMD HMDA HEM sing 202 n n 
CMD HMDB HEM sing 203 n n 
CAD CBD HEM sing 204 n n 
CAD HAD HEM sing 205 n n 
CAD HADA HEM sing 206 n n 
CBD CGD HEM sing 207 n n 
CBD HBD HEM sing 208 n n 
CBD HBDA HEM sing 209 n n 
CGD O1D HEM doub 210 n n 
CGD O2D HEM sing 211 n n 
O2A H2A HEM sing 212 n n 
O2D H2D HEM sing 213 n n 
FE NA HEM sing 214 n n 
FE NB HEM sing 215 n n 
FE NC HEM sing 216 n n 
FE ND HEM sing 217 n n 
#
_atom_sites.entry_id                     7E0P 
_atom_sites.fract_transf_matrix[1][1]    0.011662 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010922 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007888 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HU0 A 1 501 402 HU0 L84 . 
D 3 HEM A 1 502 403 HEM HEM . 
E 2 HU0 B 1 501 402 HU0 L84 . 
F 3 HEM B 1 502 403 HEM HEM . 
G 4 ACY B 1 503 404 ACY ACY . 
H 5 HOH A 1 601 15 HOH HOH . 
H 5 HOH A 2 602 9 HOH HOH . 
H 5 HOH A 3 603 2 HOH HOH . 
H 5 HOH A 4 604 6 HOH HOH . 
H 5 HOH A 5 605 16 HOH HOH . 
H 5 HOH A 6 606 14 HOH HOH . 
I 5 HOH B 1 601 8 HOH HOH . 
I 5 HOH B 2 602 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 3 16.387 -29.088 -31.609 1 44.86 ? CHA HEM 502 A 1 
HETATM 2 C CHB HEM . . . D 3 14.25 -31.715 -34.965 1 48.62 ? CHB HEM 502 A 1 
HETATM 3 C CHC HEM . . . D 3 12.881 -34.856 -31.63 1 49.44 ? CHC HEM 502 A 1 
HETATM 4 C CHD HEM . . . D 3 15.944 -32.776 -28.624 1 45.62 ? CHD HEM 502 A 1 
HETATM 5 C C1A HEM . . . D 3 15.881 -29.539 -32.775 1 49.74 ? C1A HEM 502 A 1 
HETATM 6 C C2A HEM . . . D 3 15.97 -28.837 -33.968 1 60.27 ? C2A HEM 502 A 1 
HETATM 7 C C3A HEM . . . D 3 15.379 -29.576 -34.9 1 58.87 ? C3A HEM 502 A 1 
HETATM 8 C C4A HEM . . . D 3 14.911 -30.729 -34.303 1 53.77 ? C4A HEM 502 A 1 
HETATM 9 C CMA HEM . . . D 3 15.246 -29.218 -36.341 1 62.38 ? CMA HEM 502 A 1 
HETATM 10 C CAA HEM . . . D 3 16.605 -27.51 -34.239 1 69.42 ? CAA HEM 502 A 1 
HETATM 11 C CBA HEM . . . D 3 16.45 -26.57 -33.058 1 72.86 ? CBA HEM 502 A 1 
HETATM 12 C CGA HEM . . . D 3 15.197 -25.793 -33.186 1 57.58 ? CGA HEM 502 A 1 
HETATM 13 O O1A HEM . . . D 3 14.825 -25.438 -34.29 1 67.3 ? O1A HEM 502 A 1 
HETATM 14 O O2A HEM . . . D 3 14.535 -25.511 -32.186 1 63.4 ? O2A HEM 502 A 1 
HETATM 15 C C1B HEM . . . D 3 13.69 -32.768 -34.298 1 44.12 ? C1B HEM 502 A 1 
HETATM 16 C C2B HEM . . . D 3 12.881 -33.667 -34.968 1 48.11 ? C2B HEM 502 A 1 
HETATM 17 C C3B HEM . . . D 3 12.485 -34.57 -34.068 1 47.59 ? C3B HEM 502 A 1 
HETATM 18 C C4B HEM . . . D 3 13.082 -34.171 -32.801 1 48.74 ? C4B HEM 502 A 1 
HETATM 19 C CMB HEM . . . D 3 12.548 -33.611 -36.418 1 53.17 ? CMB HEM 502 A 1 
HETATM 20 C CAB HEM . . . D 3 11.611 -35.709 -34.309 1 54.12 ? CAB HEM 502 A 1 
HETATM 21 C CBB HEM . . . D 3 11.013 -35.824 -35.474 1 56.79 ? CBB HEM 502 A 1 
HETATM 22 C C1C HEM . . . D 3 13.637 -34.589 -30.525 1 53.25 ? C1C HEM 502 A 1 
HETATM 23 C C2C HEM . . . D 3 13.668 -35.338 -29.37 1 47.72 ? C2C HEM 502 A 1 
HETATM 24 C C3C HEM . . . D 3 14.55 -34.729 -28.531 1 48.85 ? C3C HEM 502 A 1 
HETATM 25 C C4C HEM . . . D 3 15.05 -33.616 -29.181 1 51.41 ? C4C HEM 502 A 1 
HETATM 26 C CMC HEM . . . D 3 12.882 -36.581 -29.117 1 52.27 ? CMC HEM 502 A 1 
HETATM 27 C CAC HEM . . . D 3 14.956 -35.123 -27.201 1 59.41 ? CAC HEM 502 A 1 
HETATM 28 C CBC HEM . . . D 3 14.073 -35.689 -26.413 1 70.49 ? CBC HEM 502 A 1 
HETATM 29 C C1D HEM . . . D 3 16.258 -31.588 -29.234 1 44.47 ? C1D HEM 502 A 1 
HETATM 30 C C2D HEM . . . D 3 17.074 -30.625 -28.544 1 43.37 ? C2D HEM 502 A 1 
HETATM 31 C C3D HEM . . . D 3 17.212 -29.615 -29.351 1 49.93 ? C3D HEM 502 A 1 
HETATM 32 C C4D HEM . . . D 3 16.464 -29.949 -30.553 1 48.06 ? C4D HEM 502 A 1 
HETATM 33 C CMD HEM . . . D 3 17.671 -30.713 -27.185 1 50.57 ? CMD HEM 502 A 1 
HETATM 34 C CAD HEM . . . D 3 18.006 -28.402 -28.986 1 48.01 ? CAD HEM 502 A 1 
HETATM 35 C CBD HEM . . . D 3 19.459 -28.516 -29.442 1 48.36 ? CBD HEM 502 A 1 
HETATM 36 C CGD HEM . . . D 3 20.284 -29.426 -28.602 1 47.22 ? CGD HEM 502 A 1 
HETATM 37 O O1D HEM . . . D 3 20.559 -29.144 -27.448 1 43.8 ? O1D HEM 502 A 1 
HETATM 38 O O2D HEM . . . D 3 20.7 -30.474 -29.076 1 56.43 ? O2D HEM 502 A 1 
HETATM 39 N NA HEM . . . D 3 15.203 -30.685 -32.995 1 45.61 ? NA HEM 502 A 1 
HETATM 40 N NB HEM . . . D 3 13.793 -33.085 -33.032 1 48.22 ? NB HEM 502 A 1 
HETATM 41 N NC HEM . . . D 3 14.447 -33.527 -30.376 1 53.63 ? NC HEM 502 A 1 
HETATM 42 N ND HEM . . . D 3 15.917 -31.153 -30.433 1 45.92 ? ND HEM 502 A 1 
HETATM 43 FE FE HEM . . . D 3 14.91 -32.034 -31.669 1 49.91 ? FE HEM 502 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#