data_7E0S # _model_server_result.job_id 1amWqf0xANZPHXpmcZTgUg _model_server_result.datetime_utc '2024-10-19 06:34:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7E0S # _exptl.entry_id 7E0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E0S _cell.length_a 85.686 _cell.length_b 96.345 _cell.length_c 130.226 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 297 A CYS 308 1_555 B SG CYS 297 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc1 A NE2 HIS 335 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 D N18 HU6 . A HU6 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc3 B NE2 HIS 335 B HIS 346 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 E FE HEM . B HEM 501 1_555 F N18 HU6 . B HU6 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 136 n n CHA C4D HEM doub 137 n n CHA HHA HEM sing 138 n n CHB C4A HEM sing 139 n n CHB C1B HEM doub 140 n n CHB HHB HEM sing 141 n n CHC C4B HEM sing 142 n n CHC C1C HEM doub 143 n n CHC HHC HEM sing 144 n n CHD C4C HEM doub 145 n n CHD C1D HEM sing 146 n n CHD HHD HEM sing 147 n n C1A C2A HEM doub 148 n y C1A NA HEM sing 149 n y C2A C3A HEM sing 150 n y C2A CAA HEM sing 151 n n C3A C4A HEM doub 152 n y C3A CMA HEM sing 153 n n C4A NA HEM sing 154 n y CMA HMA HEM sing 155 n n CMA HMAA HEM sing 156 n n CMA HMAB HEM sing 157 n n CAA CBA HEM sing 158 n n CAA HAA HEM sing 159 n n CAA HAAA HEM sing 160 n n CBA CGA HEM sing 161 n n CBA HBA HEM sing 162 n n CBA HBAA HEM sing 163 n n CGA O1A HEM doub 164 n n CGA O2A HEM sing 165 n n C1B C2B HEM sing 166 n n C1B NB HEM sing 167 n n C2B C3B HEM doub 168 n n C2B CMB HEM sing 169 n n C3B C4B HEM sing 170 n n C3B CAB HEM sing 171 n n C4B NB HEM doub 172 n n CMB HMB HEM sing 173 n n CMB HMBA HEM sing 174 n n CMB HMBB HEM sing 175 n n CAB CBB HEM doub 176 n n CAB HAB HEM sing 177 n n CBB HBB HEM sing 178 n n CBB HBBA HEM sing 179 n n C1C C2C HEM sing 180 n y C1C NC HEM sing 181 n y C2C C3C HEM doub 182 n y C2C CMC HEM sing 183 n n C3C C4C HEM sing 184 n y C3C CAC HEM sing 185 n n C4C NC HEM sing 186 n y CMC HMC HEM sing 187 n n CMC HMCA HEM sing 188 n n CMC HMCB HEM sing 189 n n CAC CBC HEM doub 190 n n CAC HAC HEM sing 191 n n CBC HBC HEM sing 192 n n CBC HBCA HEM sing 193 n n C1D C2D HEM sing 194 n n C1D ND HEM doub 195 n n C2D C3D HEM doub 196 n n C2D CMD HEM sing 197 n n C3D C4D HEM sing 198 n n C3D CAD HEM sing 199 n n C4D ND HEM sing 200 n n CMD HMD HEM sing 201 n n CMD HMDA HEM sing 202 n n CMD HMDB HEM sing 203 n n CAD CBD HEM sing 204 n n CAD HAD HEM sing 205 n n CAD HADA HEM sing 206 n n CBD CGD HEM sing 207 n n CBD HBD HEM sing 208 n n CBD HBDA HEM sing 209 n n CGD O1D HEM doub 210 n n CGD O2D HEM sing 211 n n O2A H2A HEM sing 212 n n O2D H2D HEM sing 213 n n FE NA HEM sing 214 n n FE NB HEM sing 215 n n FE NC HEM sing 216 n n FE ND HEM sing 217 n n # _atom_sites.entry_id 7E0S _atom_sites.fract_transf_matrix[1][1] 0.011671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 403 HEM HEM . D 3 HU6 A 1 502 404 HU6 167 . E 2 HEM B 1 501 403 HEM HEM . F 3 HU6 B 1 502 404 HU6 167 . G 4 ACY B 1 503 405 ACY ACY . H 5 HOH A 1 601 12 HOH HOH . H 5 HOH A 2 602 11 HOH HOH . H 5 HOH A 3 603 5 HOH HOH . H 5 HOH A 4 604 10 HOH HOH . H 5 HOH A 5 605 20 HOH HOH . H 5 HOH A 6 606 13 HOH HOH . H 5 HOH A 7 607 7 HOH HOH . H 5 HOH A 8 608 16 HOH HOH . H 5 HOH A 9 609 15 HOH HOH . H 5 HOH A 10 610 6 HOH HOH . I 5 HOH B 1 601 4 HOH HOH . I 5 HOH B 2 602 1 HOH HOH . I 5 HOH B 3 603 2 HOH HOH . I 5 HOH B 4 604 18 HOH HOH . I 5 HOH B 5 605 24 HOH HOH . I 5 HOH B 6 606 19 HOH HOH . I 5 HOH B 7 607 17 HOH HOH . I 5 HOH B 8 608 9 HOH HOH . I 5 HOH B 9 609 21 HOH HOH . I 5 HOH B 10 610 14 HOH HOH . I 5 HOH B 11 611 22 HOH HOH . I 5 HOH B 12 612 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 20.136 2.968 -20.48 1 50.01 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . C 2 20.894 3.852 -15.857 1 44.38 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . C 2 23.153 8.053 -16.808 1 45.48 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . C 2 21.753 7.404 -21.353 1 43.09 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . C 2 20.125 2.841 -19.129 1 45.69 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . C 2 19.519 1.747 -18.392 1 43.6 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . C 2 19.746 1.974 -17.102 1 48.2 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . C 2 20.496 3.235 -17.004 1 46.41 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . C 2 19.285 1.088 -15.916 1 50.85 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . C 2 18.779 0.542 -19.025 1 48.82 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . C 2 17.328 0.882 -19.311 1 44.85 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . C 2 16.643 1.088 -17.983 1 53.27 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . C 2 16.065 2.192 -17.738 1 55.43 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . C 2 16.728 0.139 -17.16 1 51.79 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . C 2 21.497 5.068 -15.758 1 54.86 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . C 2 21.796 5.689 -14.475 1 66.97 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . C 2 22.419 6.838 -14.789 1 56.7 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . C 2 22.566 6.96 -16.213 1 58.5 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . C 2 21.381 5.072 -13.102 1 63.63 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . C 2 22.99 7.95 -13.931 1 56.41 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . C 2 23.385 7.694 -12.695 1 75.47 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . C 2 22.943 8.351 -18.109 1 46.15 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . C 2 23.254 9.569 -18.853 1 48.57 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . C 2 22.826 9.322 -20.107 1 58.7 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . C 2 22.266 7.98 -20.191 1 52.07 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . C 2 23.953 10.834 -18.272 1 42.56 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . C 2 22.875 10.197 -21.368 1 59.23 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . C 2 23.596 11.301 -21.446 1 71.63 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . C 2 21.273 6.13 -21.503 1 46.78 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . C 2 20.955 5.499 -22.747 1 44.37 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . C 2 20.511 4.264 -22.517 1 48.56 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . C 2 20.539 4.096 -21.098 1 45.65 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . C 2 21.154 6.216 -24.076 1 61.07 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . C 2 20.001 3.178 -23.498 1 58.06 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . C 2 21.025 2.764 -24.547 1 72.94 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . C 2 22.202 2.285 -23.8 1 53.53 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . C 2 22.203 1.187 -23.214 1 70.46 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . C 2 23.108 3.093 -23.785 1 57.06 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . C 2 20.709 3.745 -18.265 1 48.82 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . C 2 21.98 5.854 -16.803 1 56.34 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . C 2 22.349 7.409 -18.933 1 47.51 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . C 2 21.006 5.24 -20.483 1 47.55 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . C 2 21.425 5.669 -18.642 1 50.34 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #