data_7E17 # _model_server_result.job_id 5X5-FbmICbELTABnBaZlcw _model_server_result.datetime_utc '2024-10-26 14:22:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 7E17 # _exptl.entry_id 7E17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E17 _cell.length_a 79.58 _cell.length_b 79.58 _cell.length_c 270.53 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 3 1_555 A SG CYS 26 A CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 8 A CYS 6 1_555 A SG CYS 14 A CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 A SG CYS 19 A CYS 17 1_555 A SG CYS 47 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf4 A SG CYS 73 A CYS 71 1_555 A SG CYS 78 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 A SG CYS 97 A CYS 95 1_555 A SG CYS 124 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf6 A SG CYS 155 A CYS 153 1_555 A SG CYS 172 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 A SG CYS 173 A CYS 171 1_555 A SG CYS 178 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf8 A SG CYS 196 A CYS 194 1_555 A SG CYS 224 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf9 A SG CYS 199 A CYS 197 1_555 A SG CYS 207 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf10 A SG CYS 217 A CYS 215 1_555 A SG CYS 243 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 A SG CYS 249 A CYS 247 1_555 A SG CYS 267 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf12 A SG CYS 268 A CYS 266 1_555 A SG CYS 273 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf13 B SG CYS 5 B CYS 3 1_555 B SG CYS 26 B CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf14 B SG CYS 8 B CYS 6 1_555 B SG CYS 14 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf15 B SG CYS 19 B CYS 17 1_555 B SG CYS 47 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf16 B SG CYS 73 B CYS 71 1_555 B SG CYS 78 B CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf17 B SG CYS 97 B CYS 95 1_555 B SG CYS 124 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf18 B SG CYS 117 B CYS 115 1_555 B SG CYS 149 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf19 B SG CYS 155 B CYS 153 1_555 B SG CYS 172 B CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf20 B SG CYS 173 B CYS 171 1_555 B SG CYS 178 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf21 B SG CYS 196 B CYS 194 1_555 B SG CYS 224 B CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf22 B SG CYS 199 B CYS 197 1_555 B SG CYS 207 B CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf23 B SG CYS 217 B CYS 215 1_555 B SG CYS 243 B CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf24 B SG CYS 249 B CYS 247 1_555 B SG CYS 267 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf25 B SG CYS 268 B CYS 266 1_555 B SG CYS 273 B CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 54 A ASN 52 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 A ND2 ASN 174 A ASN 172 1_555 D C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale3 A ND2 ASN 202 A ASN 200 1_555 E C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 54 B ASN 52 1_555 F C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B ND2 ASN 174 B ASN 172 1_555 G C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 B ND2 ASN 202 B ASN 200 1_555 H C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7E17 _atom_sites.fract_transf_matrix[1][1] 0.012566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 301 1052 NAG NAG . D 2 NAG A 1 302 1172 NAG NAG . E 2 NAG A 1 303 1200 NAG NAG . F 2 NAG B 1 301 1052 NAG NAG . G 2 NAG B 1 302 1172 NAG NAG . H 2 NAG B 1 303 1200 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 2 -4.424 37.925 271.424 1 102.43 ? C1 NAG 302 B 1 HETATM 2 C C2 NAG . . . G 2 -4.189 39.295 270.826 1 101.32 ? C2 NAG 302 B 1 HETATM 3 C C3 NAG . . . G 2 -5.305 40.218 271.3 1 106.81 ? C3 NAG 302 B 1 HETATM 4 C C4 NAG . . . G 2 -6.666 39.611 270.959 1 109.99 ? C4 NAG 302 B 1 HETATM 5 C C5 NAG . . . G 2 -6.757 38.126 271.359 1 110.23 ? C5 NAG 302 B 1 HETATM 6 C C6 NAG . . . G 2 -7.995 37.434 270.837 1 113.25 ? C6 NAG 302 B 1 HETATM 7 C C7 NAG . . . G 2 -1.871 39.88 270.3 1 100.39 ? C7 NAG 302 B 1 HETATM 8 C C8 NAG . . . G 2 -0.585 40.48 270.803 1 97 ? C8 NAG 302 B 1 HETATM 9 N N2 NAG . . . G 2 -2.884 39.835 271.174 1 101.31 ? N2 NAG 302 B 1 HETATM 10 O O3 NAG . . . G 2 -5.165 41.522 270.748 1 106.15 ? O3 NAG 302 B 1 HETATM 11 O O4 NAG . . . G 2 -7.686 40.329 271.646 1 116.22 ? O4 NAG 302 B 1 HETATM 12 O O5 NAG . . . G 2 -5.621 37.375 270.887 1 110.83 ? O5 NAG 302 B 1 HETATM 13 O O6 NAG . . . G 2 -8.346 36.332 271.663 1 109.85 ? O6 NAG 302 B 1 HETATM 14 O O7 NAG . . . G 2 -1.985 39.449 269.155 1 94.69 ? O7 NAG 302 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #