data_7E1R # _model_server_result.job_id rVTvge8NyiV4VoiiF-4hTg _model_server_result.datetime_utc '2024-10-09 23:22:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1002}' # _entry.id 7E1R # _exptl.entry_id 7E1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.52 _cell.angle_gamma 90 _cell.entry_id 7E1R _cell.length_a 51.793 _cell.length_b 104.443 _cell.length_c 99.576 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG SER 44 B SER 36 1_555 G P PN7 . B PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.641 ? covale ? covale2 D OG SER 44 D SER 36 1_555 J P PN7 . D PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? metalc ? metalc1 A SG CYS 309 A CYS 300 1_555 F FE1 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc2 A SG CYS 313 A CYS 304 1_555 F FE4 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc3 A SG CYS 317 A CYS 308 1_555 F FE2 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 A SG CYS 329 A CYS 320 1_555 F FE3 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc5 C SG CYS 313 C CYS 304 1_555 I FE4 SF4 . C SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc6 C SG CYS 317 C CYS 308 1_555 I FE2 SF4 . C SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc7 C SG CYS 329 C CYS 320 1_555 I FE3 SF4 . C SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 388 n n FE1 S3 SF4 sing 389 n n FE1 S4 SF4 sing 390 n n FE2 S1 SF4 sing 391 n n FE2 S3 SF4 sing 392 n n FE2 S4 SF4 sing 393 n n FE3 S1 SF4 sing 394 n n FE3 S2 SF4 sing 395 n n FE3 S4 SF4 sing 396 n n FE4 S1 SF4 sing 397 n n FE4 S2 SF4 sing 398 n n FE4 S3 SF4 sing 399 n n # _atom_sites.entry_id 7E1R _atom_sites.fract_transf_matrix[1][1] 0.019308 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003238 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 FMN A 1 1001 1001 FMN FMN . F 4 SF4 A 1 1002 2001 SF4 SF4 . G 5 PN7 B 1 101 36 PN7 PSR . H 3 FMN C 1 1001 1001 FMN FMN . I 4 SF4 C 1 1002 2001 SF4 SF4 . J 5 PN7 D 1 101 36 PN7 PSR . K 6 HOH A 1 1101 18 HOH HOH . K 6 HOH A 2 1102 28 HOH HOH . K 6 HOH A 3 1103 4 HOH HOH . K 6 HOH A 4 1104 11 HOH HOH . K 6 HOH A 5 1105 9 HOH HOH . K 6 HOH A 6 1106 6 HOH HOH . K 6 HOH A 7 1107 17 HOH HOH . K 6 HOH A 8 1108 38 HOH HOH . K 6 HOH A 9 1109 33 HOH HOH . K 6 HOH A 10 1110 39 HOH HOH . K 6 HOH A 11 1111 30 HOH HOH . K 6 HOH A 12 1112 8 HOH HOH . K 6 HOH A 13 1113 29 HOH HOH . K 6 HOH A 14 1114 15 HOH HOH . K 6 HOH A 15 1115 42 HOH HOH . K 6 HOH A 16 1116 27 HOH HOH . K 6 HOH A 17 1117 34 HOH HOH . K 6 HOH A 18 1118 37 HOH HOH . K 6 HOH A 19 1119 16 HOH HOH . K 6 HOH A 20 1120 14 HOH HOH . K 6 HOH A 21 1121 43 HOH HOH . K 6 HOH A 22 1122 41 HOH HOH . K 6 HOH A 23 1123 40 HOH HOH . L 6 HOH B 1 201 7 HOH HOH . M 6 HOH C 1 1101 32 HOH HOH . M 6 HOH C 2 1102 19 HOH HOH . M 6 HOH C 3 1103 10 HOH HOH . M 6 HOH C 4 1104 26 HOH HOH . M 6 HOH C 5 1105 3 HOH HOH . M 6 HOH C 6 1106 20 HOH HOH . M 6 HOH C 7 1107 25 HOH HOH . M 6 HOH C 8 1108 1 HOH HOH . M 6 HOH C 9 1109 44 HOH HOH . M 6 HOH C 10 1110 5 HOH HOH . M 6 HOH C 11 1111 31 HOH HOH . M 6 HOH C 12 1112 2 HOH HOH . M 6 HOH C 13 1113 45 HOH HOH . M 6 HOH C 14 1114 13 HOH HOH . M 6 HOH C 15 1115 21 HOH HOH . M 6 HOH C 16 1116 35 HOH HOH . M 6 HOH C 17 1117 24 HOH HOH . M 6 HOH C 18 1118 12 HOH HOH . M 6 HOH C 19 1119 46 HOH HOH . M 6 HOH C 20 1120 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . F 4 26.368 -20.548 -3.642 1 23.36 ? FE1 SF4 1002 A 1 HETATM 2 FE FE2 SF4 . . . F 4 23.747 -20.021 -4.172 1 21.91 ? FE2 SF4 1002 A 1 HETATM 3 FE FE3 SF4 . . . F 4 25.669 -19.1 -5.849 1 20 ? FE3 SF4 1002 A 1 HETATM 4 FE FE4 SF4 . . . F 4 25.406 -18.022 -3.381 1 24.23 ? FE4 SF4 1002 A 1 HETATM 5 S S1 SF4 . . . F 4 23.884 -17.951 -5.085 1 24.5 ? S1 SF4 1002 A 1 HETATM 6 S S2 SF4 . . . F 4 27.35 -18.633 -4.371 1 26.06 ? S2 SF4 1002 A 1 HETATM 7 S S3 SF4 . . . F 4 24.795 -19.834 -2.157 1 31.33 ? S3 SF4 1002 A 1 HETATM 8 S S4 SF4 . . . F 4 25.172 -21.265 -5.427 1 27.71 ? S4 SF4 1002 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #