data_7E1R
#
_model_server_result.job_id            t_PDQdb2fYWkG3wr7-FeOg 
_model_server_result.datetime_utc      '2024-11-23 17:05:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7e1r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":101}' 
#
_entry.id    7E1R 
#
_exptl.entry_id    7E1R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              358.348 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.52 
_cell.angle_gamma         90 
_cell.entry_id            7E1R 
_cell.length_a            51.793 
_cell.length_b            104.443 
_cell.length_c            99.576 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7E1R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG SER 44 B SER 36 1_555 G P PN7 . B PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.641 ? 
covale ? covale2 D OG SER 44 D SER 36 1_555 J P PN7 . D PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? 
metalc ? metalc1 A SG CYS 309 A CYS 300 1_555 F FE1 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc2 A SG CYS 313 A CYS 304 1_555 F FE4 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc3 A SG CYS 317 A CYS 308 1_555 F FE2 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc4 A SG CYS 329 A CYS 320 1_555 F FE3 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc5 C SG CYS 313 C CYS 304 1_555 I FE4 SF4 . C SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc6 C SG CYS 317 C CYS 308 1_555 I FE2 SF4 . C SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc7 C SG CYS 329 C CYS 320 1_555 I FE3 SF4 . C SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
#
_chem_comp.formula           'C11 H23 N2 O7 P S' 
_chem_comp.formula_weight    358.348 
_chem_comp.id                PN7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C3 PN7 sing 314 n n 
C3 C4 PN7 sing 315 n n 
C3 C2 PN7 sing 316 n n 
O4 C4 PN7 doub 317 n n 
CE2 C2 PN7 sing 318 n n 
C4 N5 PN7 sing 319 n n 
C1 C2 PN7 sing 320 n n 
C1 O3P PN7 sing 321 n n 
N5 C6 PN7 sing 322 n n 
C2 CE1 PN7 sing 323 n n 
C6 C7 PN7 sing 324 n n 
O2P P PN7 doub 325 n n 
O1P P PN7 sing 326 n n 
C7 C8 PN7 sing 327 n n 
P O3P PN7 sing 328 n n 
O8 C8 PN7 doub 329 n n 
C8 N9 PN7 sing 330 n n 
N9 C10 PN7 sing 331 n n 
S12 C11 PN7 sing 332 n n 
C10 C11 PN7 sing 333 n n 
O3 H1 PN7 sing 334 n n 
C1 H2 PN7 sing 335 n n 
C1 H3 PN7 sing 336 n n 
O1P H4 PN7 sing 337 n n 
CE1 H5 PN7 sing 338 n n 
CE1 H6 PN7 sing 339 n n 
CE1 H7 PN7 sing 340 n n 
CE2 H8 PN7 sing 341 n n 
CE2 H9 PN7 sing 342 n n 
CE2 H10 PN7 sing 343 n n 
C3 H11 PN7 sing 344 n n 
N5 H12 PN7 sing 345 n n 
C6 H13 PN7 sing 346 n n 
C6 H14 PN7 sing 347 n n 
C7 H15 PN7 sing 348 n n 
C7 H16 PN7 sing 349 n n 
N9 H17 PN7 sing 350 n n 
C10 H18 PN7 sing 351 n n 
C10 H19 PN7 sing 352 n n 
C11 H20 PN7 sing 353 n n 
C11 H21 PN7 sing 354 n n 
S12 H22 PN7 sing 355 n n 
P O4P PN7 sing 356 n n 
O4P H23 PN7 sing 357 n n 
#
_atom_sites.entry_id                     7E1R 
_atom_sites.fract_transf_matrix[1][1]    0.019308 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003238 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009575 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010183 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 FMN A 1 1001 1001 FMN FMN . 
F 4 SF4 A 1 1002 2001 SF4 SF4 . 
G 5 PN7 B 1 101 36 PN7 PSR . 
H 3 FMN C 1 1001 1001 FMN FMN . 
I 4 SF4 C 1 1002 2001 SF4 SF4 . 
J 5 PN7 D 1 101 36 PN7 PSR . 
K 6 HOH A 1 1101 18 HOH HOH . 
K 6 HOH A 2 1102 28 HOH HOH . 
K 6 HOH A 3 1103 4 HOH HOH . 
K 6 HOH A 4 1104 11 HOH HOH . 
K 6 HOH A 5 1105 9 HOH HOH . 
K 6 HOH A 6 1106 6 HOH HOH . 
K 6 HOH A 7 1107 17 HOH HOH . 
K 6 HOH A 8 1108 38 HOH HOH . 
K 6 HOH A 9 1109 33 HOH HOH . 
K 6 HOH A 10 1110 39 HOH HOH . 
K 6 HOH A 11 1111 30 HOH HOH . 
K 6 HOH A 12 1112 8 HOH HOH . 
K 6 HOH A 13 1113 29 HOH HOH . 
K 6 HOH A 14 1114 15 HOH HOH . 
K 6 HOH A 15 1115 42 HOH HOH . 
K 6 HOH A 16 1116 27 HOH HOH . 
K 6 HOH A 17 1117 34 HOH HOH . 
K 6 HOH A 18 1118 37 HOH HOH . 
K 6 HOH A 19 1119 16 HOH HOH . 
K 6 HOH A 20 1120 14 HOH HOH . 
K 6 HOH A 21 1121 43 HOH HOH . 
K 6 HOH A 22 1122 41 HOH HOH . 
K 6 HOH A 23 1123 40 HOH HOH . 
L 6 HOH B 1 201 7 HOH HOH . 
M 6 HOH C 1 1101 32 HOH HOH . 
M 6 HOH C 2 1102 19 HOH HOH . 
M 6 HOH C 3 1103 10 HOH HOH . 
M 6 HOH C 4 1104 26 HOH HOH . 
M 6 HOH C 5 1105 3 HOH HOH . 
M 6 HOH C 6 1106 20 HOH HOH . 
M 6 HOH C 7 1107 25 HOH HOH . 
M 6 HOH C 8 1108 1 HOH HOH . 
M 6 HOH C 9 1109 44 HOH HOH . 
M 6 HOH C 10 1110 5 HOH HOH . 
M 6 HOH C 11 1111 31 HOH HOH . 
M 6 HOH C 12 1112 2 HOH HOH . 
M 6 HOH C 13 1113 45 HOH HOH . 
M 6 HOH C 14 1114 13 HOH HOH . 
M 6 HOH C 15 1115 21 HOH HOH . 
M 6 HOH C 16 1116 35 HOH HOH . 
M 6 HOH C 17 1117 24 HOH HOH . 
M 6 HOH C 18 1118 12 HOH HOH . 
M 6 HOH C 19 1119 46 HOH HOH . 
M 6 HOH C 20 1120 36 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 PN7 . . . J 5 4.799 8.39 38.329 1 78.54 ? O3 PN7 101 D 1 
HETATM 2 O O4 PN7 . . . J 5 3.915 8.834 41.636 1 79.64 ? O4 PN7 101 D 1 
HETATM 3 C C2 PN7 . . . J 5 3.218 10.206 38.933 1 81.38 ? C2 PN7 101 D 1 
HETATM 4 C C1 PN7 . . . J 5 3.275 11.779 39.095 1 84.87 ? C1 PN7 101 D 1 
HETATM 5 P P PN7 . . . J 5 1.802 14.17 38.301 1 97.28 ? P PN7 101 D 1 
HETATM 6 O O1P PN7 . . . J 5 1.096 14.77 39.502 1 60.66 ? O1P PN7 101 D 1 
HETATM 7 O O2P PN7 . . . J 5 3.003 14.915 37.753 1 77.33 ? O2P PN7 101 D 1 
HETATM 8 O O3P PN7 . . . J 5 2.127 12.545 38.541 1 99.64 ? O3P PN7 101 D 1 
HETATM 9 C CE1 PN7 . . . J 5 1.953 9.604 39.53 1 69.48 ? CE1 PN7 101 D 1 
HETATM 10 C CE2 PN7 . . . J 5 3.091 9.916 37.443 1 82.18 ? CE2 PN7 101 D 1 
HETATM 11 C C3 PN7 . . . J 5 4.502 9.367 39.36 1 75.46 ? C3 PN7 101 D 1 
HETATM 12 C C4 PN7 . . . J 5 4.57 8.529 40.657 1 75.39 ? C4 PN7 101 D 1 
HETATM 13 N N5 PN7 . . . J 5 5.418 7.467 40.78 1 60.43 ? N5 PN7 101 D 1 
HETATM 14 C C6 PN7 . . . J 5 5.54 6.598 41.972 1 52.54 ? C6 PN7 101 D 1 
HETATM 15 C C7 PN7 . . . J 5 6.808 6.816 42.837 1 53.52 ? C7 PN7 101 D 1 
HETATM 16 C C8 PN7 . . . J 5 6.673 5.985 44.121 1 63.17 ? C8 PN7 101 D 1 
HETATM 17 O O8 PN7 . . . J 5 5.747 5.193 44.125 1 69.36 ? O8 PN7 101 D 1 
HETATM 18 N N9 PN7 . . . J 5 7.455 6.024 45.235 1 55.06 ? N9 PN7 101 D 1 
HETATM 19 C C10 PN7 . . . J 5 8.62 6.726 45.776 1 55.24 ? C10 PN7 101 D 1 
HETATM 20 C C11 PN7 . . . J 5 8.711 6.14 47.199 1 54.59 ? C11 PN7 101 D 1 
HETATM 21 S S12 PN7 . . . J 5 9.708 7.076 48.419 1 66.01 ? S12 PN7 101 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           21 
#