data_7E1S # _model_server_result.job_id Rmkga0-PUU2W-ad442wkhA _model_server_result.datetime_utc '2024-10-10 01:16:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e1s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1002}' # _entry.id 7E1S # _exptl.entry_id 7E1S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E1S _cell.length_a 98.894 _cell.length_b 100.133 _cell.length_c 105.479 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E1S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG SER 44 B SER 36 1_555 G P24 66S . B 66S 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.565 ? covale ? covale2 D OG SER 44 D SER 36 1_555 J P24 66S . D 66S 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? metalc ? metalc1 A SG CYS 309 A CYS 300 1_555 F FE1 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 A SG CYS 313 A CYS 304 1_555 F FE4 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc3 A SG CYS 317 A CYS 308 1_555 F FE2 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc4 A SG CYS 329 A CYS 320 1_555 F FE3 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc5 C SG CYS 309 C CYS 300 1_555 I FE1 SF4 . C SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc6 C SG CYS 313 C CYS 304 1_555 I FE4 SF4 . C SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc7 C SG CYS 317 C CYS 308 1_555 I FE2 SF4 . C SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc8 C SG CYS 329 C CYS 320 1_555 I FE3 SF4 . C SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc9 I FE1 SF4 . C SF4 1002 1_555 M O HOH . C HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 411 n n FE1 S3 SF4 sing 412 n n FE1 S4 SF4 sing 413 n n FE2 S1 SF4 sing 414 n n FE2 S3 SF4 sing 415 n n FE2 S4 SF4 sing 416 n n FE3 S1 SF4 sing 417 n n FE3 S2 SF4 sing 418 n n FE3 S4 SF4 sing 419 n n FE4 S1 SF4 sing 420 n n FE4 S2 SF4 sing 421 n n FE4 S3 SF4 sing 422 n n # _atom_sites.entry_id 7E1S _atom_sites.fract_transf_matrix[1][1] 0.010112 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 FMN A 1 1001 1001 FMN FMN . F 4 SF4 A 1 1002 2001 SF4 SF4 . G 5 66S B 1 101 136 66S DRG . H 3 FMN C 1 1001 1001 FMN FMN . I 4 SF4 C 1 1002 2001 SF4 SF4 . J 5 66S D 1 101 136 66S DRG . K 6 HOH A 1 1101 122 HOH HOH . K 6 HOH A 2 1102 18 HOH HOH . K 6 HOH A 3 1103 162 HOH HOH . K 6 HOH A 4 1104 109 HOH HOH . K 6 HOH A 5 1105 174 HOH HOH . K 6 HOH A 6 1106 110 HOH HOH . K 6 HOH A 7 1107 100 HOH HOH . K 6 HOH A 8 1108 125 HOH HOH . K 6 HOH A 9 1109 20 HOH HOH . K 6 HOH A 10 1110 13 HOH HOH . K 6 HOH A 11 1111 74 HOH HOH . K 6 HOH A 12 1112 82 HOH HOH . K 6 HOH A 13 1113 96 HOH HOH . K 6 HOH A 14 1114 145 HOH HOH . K 6 HOH A 15 1115 89 HOH HOH . K 6 HOH A 16 1116 126 HOH HOH . K 6 HOH A 17 1117 65 HOH HOH . K 6 HOH A 18 1118 120 HOH HOH . K 6 HOH A 19 1119 123 HOH HOH . K 6 HOH A 20 1120 6 HOH HOH . K 6 HOH A 21 1121 75 HOH HOH . K 6 HOH A 22 1122 115 HOH HOH . K 6 HOH A 23 1123 33 HOH HOH . K 6 HOH A 24 1124 23 HOH HOH . K 6 HOH A 25 1125 84 HOH HOH . K 6 HOH A 26 1126 21 HOH HOH . K 6 HOH A 27 1127 104 HOH HOH . K 6 HOH A 28 1128 135 HOH HOH . K 6 HOH A 29 1129 118 HOH HOH . K 6 HOH A 30 1130 106 HOH HOH . K 6 HOH A 31 1131 55 HOH HOH . K 6 HOH A 32 1132 14 HOH HOH . K 6 HOH A 33 1133 32 HOH HOH . K 6 HOH A 34 1134 165 HOH HOH . K 6 HOH A 35 1135 124 HOH HOH . K 6 HOH A 36 1136 128 HOH HOH . K 6 HOH A 37 1137 193 HOH HOH . K 6 HOH A 38 1138 134 HOH HOH . K 6 HOH A 39 1139 35 HOH HOH . K 6 HOH A 40 1140 183 HOH HOH . K 6 HOH A 41 1141 42 HOH HOH . K 6 HOH A 42 1142 50 HOH HOH . K 6 HOH A 43 1143 59 HOH HOH . K 6 HOH A 44 1144 28 HOH HOH . K 6 HOH A 45 1145 44 HOH HOH . K 6 HOH A 46 1146 101 HOH HOH . K 6 HOH A 47 1147 51 HOH HOH . K 6 HOH A 48 1148 111 HOH HOH . K 6 HOH A 49 1149 22 HOH HOH . K 6 HOH A 50 1150 72 HOH HOH . K 6 HOH A 51 1151 94 HOH HOH . K 6 HOH A 52 1152 92 HOH HOH . K 6 HOH A 53 1153 97 HOH HOH . K 6 HOH A 54 1154 86 HOH HOH . K 6 HOH A 55 1155 177 HOH HOH . K 6 HOH A 56 1156 66 HOH HOH . K 6 HOH A 57 1157 52 HOH HOH . K 6 HOH A 58 1158 195 HOH HOH . K 6 HOH A 59 1159 127 HOH HOH . K 6 HOH A 60 1160 29 HOH HOH . K 6 HOH A 61 1161 140 HOH HOH . K 6 HOH A 62 1162 114 HOH HOH . K 6 HOH A 63 1163 27 HOH HOH . K 6 HOH A 64 1164 121 HOH HOH . K 6 HOH A 65 1165 46 HOH HOH . K 6 HOH A 66 1166 131 HOH HOH . K 6 HOH A 67 1167 87 HOH HOH . K 6 HOH A 68 1168 85 HOH HOH . K 6 HOH A 69 1169 73 HOH HOH . L 6 HOH B 1 201 132 HOH HOH . L 6 HOH B 2 202 139 HOH HOH . L 6 HOH B 3 203 57 HOH HOH . L 6 HOH B 4 204 146 HOH HOH . L 6 HOH B 5 205 61 HOH HOH . L 6 HOH B 6 206 161 HOH HOH . L 6 HOH B 7 207 169 HOH HOH . L 6 HOH B 8 208 78 HOH HOH . L 6 HOH B 9 209 190 HOH HOH . L 6 HOH B 10 210 37 HOH HOH . L 6 HOH B 11 211 189 HOH HOH . L 6 HOH B 12 212 79 HOH HOH . L 6 HOH B 13 213 173 HOH HOH . L 6 HOH B 14 214 71 HOH HOH . L 6 HOH B 15 215 117 HOH HOH . L 6 HOH B 16 216 116 HOH HOH . L 6 HOH B 17 217 47 HOH HOH . L 6 HOH B 18 218 149 HOH HOH . L 6 HOH B 19 219 178 HOH HOH . L 6 HOH B 20 220 185 HOH HOH . M 6 HOH C 1 1101 113 HOH HOH . M 6 HOH C 2 1102 144 HOH HOH . M 6 HOH C 3 1103 148 HOH HOH . M 6 HOH C 4 1104 93 HOH HOH . M 6 HOH C 5 1105 95 HOH HOH . M 6 HOH C 6 1106 88 HOH HOH . M 6 HOH C 7 1107 70 HOH HOH . M 6 HOH C 8 1108 5 HOH HOH . M 6 HOH C 9 1109 194 HOH HOH . M 6 HOH C 10 1110 11 HOH HOH . M 6 HOH C 11 1111 176 HOH HOH . M 6 HOH C 12 1112 3 HOH HOH . M 6 HOH C 13 1113 98 HOH HOH . M 6 HOH C 14 1114 16 HOH HOH . M 6 HOH C 15 1115 147 HOH HOH . M 6 HOH C 16 1116 25 HOH HOH . M 6 HOH C 17 1117 108 HOH HOH . M 6 HOH C 18 1118 136 HOH HOH . M 6 HOH C 19 1119 105 HOH HOH . M 6 HOH C 20 1120 80 HOH HOH . M 6 HOH C 21 1121 8 HOH HOH . M 6 HOH C 22 1122 150 HOH HOH . M 6 HOH C 23 1123 157 HOH HOH . M 6 HOH C 24 1124 91 HOH HOH . M 6 HOH C 25 1125 26 HOH HOH . M 6 HOH C 26 1126 43 HOH HOH . M 6 HOH C 27 1127 156 HOH HOH . M 6 HOH C 28 1128 181 HOH HOH . M 6 HOH C 29 1129 102 HOH HOH . M 6 HOH C 30 1130 1 HOH HOH . M 6 HOH C 31 1131 2 HOH HOH . M 6 HOH C 32 1132 154 HOH HOH . M 6 HOH C 33 1133 40 HOH HOH . M 6 HOH C 34 1134 15 HOH HOH . M 6 HOH C 35 1135 7 HOH HOH . M 6 HOH C 36 1136 164 HOH HOH . M 6 HOH C 37 1137 41 HOH HOH . M 6 HOH C 38 1138 53 HOH HOH . M 6 HOH C 39 1139 36 HOH HOH . M 6 HOH C 40 1140 60 HOH HOH . M 6 HOH C 41 1141 4 HOH HOH . M 6 HOH C 42 1142 10 HOH HOH . M 6 HOH C 43 1143 81 HOH HOH . M 6 HOH C 44 1144 12 HOH HOH . M 6 HOH C 45 1145 62 HOH HOH . M 6 HOH C 46 1146 83 HOH HOH . M 6 HOH C 47 1147 58 HOH HOH . M 6 HOH C 48 1148 153 HOH HOH . M 6 HOH C 49 1149 103 HOH HOH . M 6 HOH C 50 1150 99 HOH HOH . M 6 HOH C 51 1151 138 HOH HOH . M 6 HOH C 52 1152 142 HOH HOH . M 6 HOH C 53 1153 69 HOH HOH . M 6 HOH C 54 1154 39 HOH HOH . M 6 HOH C 55 1155 137 HOH HOH . M 6 HOH C 56 1156 48 HOH HOH . M 6 HOH C 57 1157 160 HOH HOH . M 6 HOH C 58 1158 31 HOH HOH . M 6 HOH C 59 1159 141 HOH HOH . M 6 HOH C 60 1160 19 HOH HOH . M 6 HOH C 61 1161 24 HOH HOH . M 6 HOH C 62 1162 56 HOH HOH . M 6 HOH C 63 1163 130 HOH HOH . M 6 HOH C 64 1164 112 HOH HOH . M 6 HOH C 65 1165 34 HOH HOH . M 6 HOH C 66 1166 179 HOH HOH . M 6 HOH C 67 1167 9 HOH HOH . M 6 HOH C 68 1168 119 HOH HOH . M 6 HOH C 69 1169 30 HOH HOH . M 6 HOH C 70 1170 170 HOH HOH . M 6 HOH C 71 1171 63 HOH HOH . M 6 HOH C 72 1172 159 HOH HOH . M 6 HOH C 73 1173 129 HOH HOH . M 6 HOH C 74 1174 17 HOH HOH . M 6 HOH C 75 1175 54 HOH HOH . M 6 HOH C 76 1176 151 HOH HOH . M 6 HOH C 77 1177 38 HOH HOH . M 6 HOH C 78 1178 133 HOH HOH . M 6 HOH C 79 1179 184 HOH HOH . M 6 HOH C 80 1180 155 HOH HOH . M 6 HOH C 81 1181 76 HOH HOH . M 6 HOH C 82 1182 188 HOH HOH . M 6 HOH C 83 1183 143 HOH HOH . M 6 HOH C 84 1184 45 HOH HOH . M 6 HOH C 85 1185 166 HOH HOH . M 6 HOH C 86 1186 163 HOH HOH . M 6 HOH C 87 1187 64 HOH HOH . M 6 HOH C 88 1188 180 HOH HOH . M 6 HOH C 89 1189 67 HOH HOH . M 6 HOH C 90 1190 49 HOH HOH . M 6 HOH C 91 1191 182 HOH HOH . M 6 HOH C 92 1192 90 HOH HOH . M 6 HOH C 93 1193 68 HOH HOH . M 6 HOH C 94 1194 191 HOH HOH . M 6 HOH C 95 1195 187 HOH HOH . M 6 HOH C 96 1196 172 HOH HOH . M 6 HOH C 97 1197 158 HOH HOH . M 6 HOH C 98 1198 186 HOH HOH . M 6 HOH C 99 1199 168 HOH HOH . M 6 HOH C 100 1200 77 HOH HOH . M 6 HOH C 101 1201 107 HOH HOH . M 6 HOH C 102 1202 171 HOH HOH . M 6 HOH C 103 1203 192 HOH HOH . N 6 HOH D 1 201 175 HOH HOH . N 6 HOH D 2 202 167 HOH HOH . N 6 HOH D 3 203 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . I 4 -20.938 0.847 -32.974 1 33.03 ? FE1 SF4 1002 C 1 HETATM 2 FE FE2 SF4 . . . I 4 -20.766 3.454 -32.448 1 35.09 ? FE2 SF4 1002 C 1 HETATM 3 FE FE3 SF4 . . . I 4 -18.856 1.747 -31.414 1 35.93 ? FE3 SF4 1002 C 1 HETATM 4 FE FE4 SF4 . . . I 4 -21.348 1.715 -30.385 1 37.83 ? FE4 SF4 1002 C 1 HETATM 5 S S1 SF4 . . . I 4 -19.895 3.486 -30.333 1 37.33 ? S1 SF4 1002 C 1 HETATM 6 S S2 SF4 . . . I 4 -20.147 -0.087 -31.034 1 30.7 ? S2 SF4 1002 C 1 HETATM 7 S S3 SF4 . . . I 4 -22.651 2.176 -32.223 1 39.72 ? S3 SF4 1002 C 1 HETATM 8 S S4 SF4 . . . I 4 -19.194 2.211 -33.597 1 38.7 ? S4 SF4 1002 C 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #