data_7E1V # _model_server_result.job_id DEGCgR_2eaCui0O9HjI45Q _model_server_result.datetime_utc '2024-11-04 22:49:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"OA","auth_seq_id":301}' # _entry.id 7E1V # _exptl.entry_id 7E1V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 717.996 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E1V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 DA N N ? 15 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 P SG CYS 358 M CYS 358 1_555 P SG CYS 374 M CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 S SG CYS 358 A CYS 358 1_555 S SG CYS 374 A CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A SG CYS 273 E CYS 273 1_555 U CU CU . E CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A SG CYS 273 E CYS 273 1_555 V CU CU . E CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc3 A SG CYS 277 E CYS 277 1_555 U CU CU . E CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A SG CYS 277 E CYS 277 1_555 V CU CU . E CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 A ND1 HIS 281 E HIS 281 1_555 U CU CU . E CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc6 A SD MET 284 E MET 284 1_555 V CU CU . E CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 B NE2 HIS 86 F HIS 86 1_555 CA FE HEA . F HEA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc8 B ND1 HIS 264 F HIS 264 1_555 AA CU CU . F CU 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc9 B NE2 HIS 314 F HIS 314 1_555 AA CU CU . F CU 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 B NE2 HIS 397 F HIS 397 1_555 BA FE HEA . F HEA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc11 B NE2 HIS 399 F HIS 399 1_555 CA FE HEA . F HEA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc12 H SG CYS 273 Q CYS 273 1_555 FA CU CU . Q CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc13 H SG CYS 273 Q CYS 273 1_555 GA CU CU . Q CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc14 H SG CYS 277 Q CYS 277 1_555 FA CU CU . Q CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc15 H SG CYS 277 Q CYS 277 1_555 GA CU CU . Q CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc16 H ND1 HIS 281 Q HIS 281 1_555 GA CU CU . Q CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc17 H SD MET 284 Q MET 284 1_555 FA CU CU . Q CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc18 I NE2 HIS 86 R HIS 86 1_555 NA FE HEA . R HEA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc19 I ND1 HIS 264 R HIS 264 1_555 LA CU CU . R CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc20 I NE2 HIS 314 R HIS 314 1_555 LA CU CU . R CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc21 I NE2 HIS 399 R HIS 399 1_555 NA FE HEA . R HEA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc22 O NE2 HIS 114 N HIS 114 1_555 RA FE HEM . N HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc23 O NE2 HIS 128 N HIS 128 1_555 QA FE HEM . N HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc24 O NE2 HIS 216 N HIS 216 1_555 RA FE HEM . N HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc25 O NE2 HIS 231 N HIS 231 1_555 QA FE HEM . N HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc26 P ND1 HIS 355 M HIS 355 1_555 BB FE2 FES . M FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc27 P ND1 HIS 375 M HIS 375 1_555 BB FE2 FES . M FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc28 Q NE2 HIS 178 O HIS 178 1_555 IB FE HEC . O HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc29 R NE2 HIS 114 B HIS 114 1_555 LB FE HEM . B HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc30 R NE2 HIS 128 B HIS 128 1_555 KB FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc31 R NE2 HIS 216 B HIS 216 1_555 LB FE HEM . B HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc32 R NE2 HIS 231 B HIS 231 1_555 KB FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc33 S ND1 HIS 355 A HIS 355 1_555 SB FE1 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc34 S ND1 HIS 375 A HIS 375 1_555 SB FE1 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc35 T NE2 HIS 77 C HIS 77 1_555 VB FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc36 T NE2 HIS 178 C HIS 178 1_555 WB FE HEC . C HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 9Y0 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7E1V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 CU E 1 401 401 CU CU . V 11 CU E 1 402 402 CU CU . W 12 CDL F 1 601 601 CDL CDL . X 12 CDL F 1 602 602 CDL CDL . Y 13 PLM F 1 603 603 PLM PLM . Z 11 CU F 1 604 604 CU CU . AA 11 CU F 1 605 605 CU CU . BA 14 HEA F 1 606 606 HEA HEA . CA 14 HEA F 1 607 607 HEA HEA . DA 15 9Y0 G 1 301 301 9Y0 9Y0 . EA 12 CDL D 1 201 201 CDL CDL . FA 11 CU Q 1 401 401 CU CU . GA 11 CU Q 1 402 402 CU CU . HA 11 CU Q 1 403 403 CU CU . IA 12 CDL R 1 601 601 CDL CDL . JA 12 CDL R 1 602 602 CDL CDL . KA 13 PLM R 1 603 603 PLM PLM . LA 11 CU R 1 604 604 CU CU . MA 14 HEA R 1 605 605 HEA HEA . NA 14 HEA R 1 606 606 HEA HEA . OA 15 9Y0 S 1 301 301 9Y0 9Y0 . PA 12 CDL P 1 201 201 CDL CDL . QA 16 HEM N 1 601 601 HEM HEM . RA 16 HEM N 1 602 602 HEM HEM . SA 12 CDL N 1 603 603 CDL CDL . TA 13 PLM N 1 604 604 PLM PLM . UA 12 CDL N 1 605 605 CDL CDL . VA 12 CDL N 1 606 606 CDL CDL . WA 12 CDL N 1 607 607 CDL CDL . XA 17 MQ9 N 1 608 608 MQ9 MQ9 . YA 17 MQ9 N 1 609 609 MQ9 MQ9 . ZA 17 MQ9 N 1 610 610 MQ9 MQ9 . AB 17 MQ9 N 1 611 611 MQ9 MQ9 . BB 18 FES M 1 501 501 FES FES . CB 12 CDL M 1 502 502 CDL CDL . DB 19 9YF M 1 503 503 9YF 9YF . EB 19 9YF M 1 504 504 9YF 9YF . FB 17 MQ9 O 1 301 301 MQ9 MQ9 . GB 17 MQ9 O 1 302 302 MQ9 MQ9 . HB 20 HEC O 1 303 303 HEC HEC . IB 20 HEC O 1 304 304 HEC HEC . JB 13 PLM B 1 601 601 PLM PLM . KB 16 HEM B 1 602 602 HEM HEM . LB 16 HEM B 1 603 603 HEM HEM . MB 12 CDL B 1 604 604 CDL CDL . NB 12 CDL B 1 605 605 CDL CDL . OB 12 CDL B 1 606 606 CDL CDL . PB 12 CDL B 1 607 607 CDL CDL . QB 17 MQ9 B 1 608 608 MQ9 MQ9 . RB 17 MQ9 B 1 609 609 MQ9 MQ9 . SB 18 FES A 1 501 501 FES FES . TB 19 9YF A 1 502 502 9YF 9YF . UB 19 9YF A 1 503 503 9YF 9YF . VB 20 HEC C 1 301 301 HEC HEC . WB 20 HEC C 1 302 302 HEC HEC . XB 12 CDL C 1 303 303 CDL CDL . YB 17 MQ9 C 1 304 304 MQ9 MQ9 . ZB 17 MQ9 C 1 305 305 MQ9 MQ9 . AC 12 CDL C 1 306 306 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 9Y0 . . . OA 15 189.383 227.886 163.601 1 49.32 ? N 9Y0 301 S 1 HETATM 2 C C 9Y0 . . . OA 15 190.726 233.457 159.737 1 49.32 ? C 9Y0 301 S 1 HETATM 3 O O 9Y0 . . . OA 15 186.263 232.323 161.762 1 49.32 ? O 9Y0 301 S 1 HETATM 4 C C1 9Y0 . . . OA 15 190.196 232.035 159.898 1 49.32 ? C1 9Y0 301 S 1 HETATM 5 C C10 9Y0 . . . OA 15 198.096 232.757 156.804 1 49.32 ? C10 9Y0 301 S 1 HETATM 6 C C11 9Y0 . . . OA 15 198.892 232.667 155.504 1 49.32 ? C11 9Y0 301 S 1 HETATM 7 C C12 9Y0 . . . OA 15 199.039 231.233 155.001 1 49.32 ? C12 9Y0 301 S 1 HETATM 8 C C13 9Y0 . . . OA 15 197.745 230.72 154.378 1 49.32 ? C13 9Y0 301 S 1 HETATM 9 C C14 9Y0 . . . OA 15 197.62 229.464 154.002 1 49.32 ? C14 9Y0 301 S 1 HETATM 10 C C15 9Y0 . . . OA 15 198.762 228.464 154.17 1 49.32 ? C15 9Y0 301 S 1 HETATM 11 C C16 9Y0 . . . OA 15 198.401 227.092 153.609 1 49.32 ? C16 9Y0 301 S 1 HETATM 12 C C2 9Y0 . . . OA 15 188.722 232.084 160.284 1 49.32 ? C2 9Y0 301 S 1 HETATM 13 C C21 9Y0 . . . OA 15 191.804 230.419 160.408 1 49.32 ? C21 9Y0 301 S 1 HETATM 14 C C22 9Y0 . . . OA 15 193.252 230.399 160.891 1 49.32 ? C22 9Y0 301 S 1 HETATM 15 C C23 9Y0 . . . OA 15 194.24 230.333 159.73 1 49.32 ? C23 9Y0 301 S 1 HETATM 16 C C24 9Y0 . . . OA 15 195.266 229.217 159.908 1 49.32 ? C24 9Y0 301 S 1 HETATM 17 C C25 9Y0 . . . OA 15 196.695 229.75 159.971 1 49.32 ? C25 9Y0 301 S 1 HETATM 18 C C26 9Y0 . . . OA 15 197.476 229.46 158.692 1 49.32 ? C26 9Y0 301 S 1 HETATM 19 C C27 9Y0 . . . OA 15 198.176 228.104 158.73 1 49.32 ? C27 9Y0 301 S 1 HETATM 20 C C28 9Y0 . . . OA 15 199.695 228.239 158.68 1 49.32 ? C28 9Y0 301 S 1 HETATM 21 C C29 9Y0 . . . OA 15 200.383 226.926 158.321 1 49.32 ? C29 9Y0 301 S 1 HETATM 22 C C3 9Y0 . . . OA 15 187.505 229.415 163.963 1 49.32 ? C3 9Y0 301 S 1 HETATM 23 C C30 9Y0 . . . OA 15 201.769 227.147 157.724 1 49.32 ? C30 9Y0 301 S 1 HETATM 24 C C31 9Y0 . . . OA 15 202.13 226.074 156.701 1 49.32 ? C31 9Y0 301 S 1 HETATM 25 C C32 9Y0 . . . OA 15 203.547 225.54 156.886 1 49.32 ? C32 9Y0 301 S 1 HETATM 26 C C33 9Y0 . . . OA 15 203.718 224.153 156.268 1 49.32 ? C33 9Y0 301 S 1 HETATM 27 C C34 9Y0 . . . OA 15 205.157 223.874 155.841 1 49.32 ? C34 9Y0 301 S 1 HETATM 28 C C35 9Y0 . . . OA 15 205.336 222.451 155.319 1 49.32 ? C35 9Y0 301 S 1 HETATM 29 C C36 9Y0 . . . OA 15 205.942 222.421 153.919 1 49.32 ? C36 9Y0 301 S 1 HETATM 30 C C4 9Y0 . . . OA 15 189.023 229.267 163.87 1 49.32 ? C4 9Y0 301 S 1 HETATM 31 C C5 9Y0 . . . OA 15 192.742 234.438 159.068 1 49.32 ? C5 9Y0 301 S 1 HETATM 32 C C6 9Y0 . . . OA 15 194.216 234.087 159.243 1 49.32 ? C6 9Y0 301 S 1 HETATM 33 C C7 9Y0 . . . OA 15 195.086 234.683 158.14 1 49.32 ? C7 9Y0 301 S 1 HETATM 34 C C8 9Y0 . . . OA 15 196.528 234.184 158.195 1 49.32 ? C8 9Y0 301 S 1 HETATM 35 C C9 9Y0 . . . OA 15 197.108 233.92 156.808 1 49.32 ? C9 9Y0 301 S 1 HETATM 36 O O1 9Y0 . . . OA 15 187.158 230.711 163.567 1 49.32 ? O1 9Y0 301 S 1 HETATM 37 O O2 9Y0 . . . OA 15 186.226 229.905 161.303 1 49.32 ? O2 9Y0 301 S 1 HETATM 38 O O3 9Y0 . . . OA 15 188.499 231.123 161.274 1 49.32 ? O3 9Y0 301 S 1 HETATM 39 O O4 9Y0 . . . OA 15 192.392 235.566 159.119 1 49.32 ? O4 9Y0 301 S 1 HETATM 40 O O5 9Y0 . . . OA 15 191.8 233.431 158.844 1 49.32 ? O5 9Y0 301 S 1 HETATM 41 O O6 9Y0 . . . OA 15 191.438 229.621 159.615 1 49.32 ? O6 9Y0 301 S 1 HETATM 42 O O7 9Y0 . . . OA 15 190.913 231.376 160.899 1 49.32 ? O7 9Y0 301 S 1 HETATM 43 P P 9Y0 . . . OA 15 187.002 231.022 161.956 1 49.32 ? P 9Y0 301 S 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #