data_7E1V # _model_server_result.job_id CVfsL7Vxln83kD-YEuSFbQ _model_server_result.datetime_utc '2024-11-04 22:47:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"ZA","auth_seq_id":610}' # _entry.id 7E1V # _exptl.entry_id 7E1V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 785.233 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MENAQUINONE-9 _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E1V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 XA N N ? 17 YA N N ? 17 ZA N N ? 17 AB N N ? 17 FB N N ? 17 GB N N ? 17 QB N N ? 17 RB N N ? 17 YB N N ? 17 ZB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 P SG CYS 358 M CYS 358 1_555 P SG CYS 374 M CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 S SG CYS 358 A CYS 358 1_555 S SG CYS 374 A CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A SG CYS 273 E CYS 273 1_555 U CU CU . E CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A SG CYS 273 E CYS 273 1_555 V CU CU . E CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc3 A SG CYS 277 E CYS 277 1_555 U CU CU . E CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A SG CYS 277 E CYS 277 1_555 V CU CU . E CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 A ND1 HIS 281 E HIS 281 1_555 U CU CU . E CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc6 A SD MET 284 E MET 284 1_555 V CU CU . E CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 B NE2 HIS 86 F HIS 86 1_555 CA FE HEA . F HEA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc8 B ND1 HIS 264 F HIS 264 1_555 AA CU CU . F CU 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc9 B NE2 HIS 314 F HIS 314 1_555 AA CU CU . F CU 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 B NE2 HIS 397 F HIS 397 1_555 BA FE HEA . F HEA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc11 B NE2 HIS 399 F HIS 399 1_555 CA FE HEA . F HEA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc12 H SG CYS 273 Q CYS 273 1_555 FA CU CU . Q CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc13 H SG CYS 273 Q CYS 273 1_555 GA CU CU . Q CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc14 H SG CYS 277 Q CYS 277 1_555 FA CU CU . Q CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc15 H SG CYS 277 Q CYS 277 1_555 GA CU CU . Q CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc16 H ND1 HIS 281 Q HIS 281 1_555 GA CU CU . Q CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc17 H SD MET 284 Q MET 284 1_555 FA CU CU . Q CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc18 I NE2 HIS 86 R HIS 86 1_555 NA FE HEA . R HEA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc19 I ND1 HIS 264 R HIS 264 1_555 LA CU CU . R CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc20 I NE2 HIS 314 R HIS 314 1_555 LA CU CU . R CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc21 I NE2 HIS 399 R HIS 399 1_555 NA FE HEA . R HEA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc22 O NE2 HIS 114 N HIS 114 1_555 RA FE HEM . N HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc23 O NE2 HIS 128 N HIS 128 1_555 QA FE HEM . N HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc24 O NE2 HIS 216 N HIS 216 1_555 RA FE HEM . N HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc25 O NE2 HIS 231 N HIS 231 1_555 QA FE HEM . N HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc26 P ND1 HIS 355 M HIS 355 1_555 BB FE2 FES . M FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc27 P ND1 HIS 375 M HIS 375 1_555 BB FE2 FES . M FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc28 Q NE2 HIS 178 O HIS 178 1_555 IB FE HEC . O HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc29 R NE2 HIS 114 B HIS 114 1_555 LB FE HEM . B HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc30 R NE2 HIS 128 B HIS 128 1_555 KB FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc31 R NE2 HIS 216 B HIS 216 1_555 LB FE HEM . B HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc32 R NE2 HIS 231 B HIS 231 1_555 KB FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc33 S ND1 HIS 355 A HIS 355 1_555 SB FE1 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc34 S ND1 HIS 375 A HIS 375 1_555 SB FE1 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc35 T NE2 HIS 77 C HIS 77 1_555 VB FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc36 T NE2 HIS 178 C HIS 178 1_555 WB FE HEC . C HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'C56 H80 O2' _chem_comp.formula_weight 785.233 _chem_comp.id MQ9 _chem_comp.mon_nstd_flag . _chem_comp.name MENAQUINONE-9 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7E1V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 CU E 1 401 401 CU CU . V 11 CU E 1 402 402 CU CU . W 12 CDL F 1 601 601 CDL CDL . X 12 CDL F 1 602 602 CDL CDL . Y 13 PLM F 1 603 603 PLM PLM . Z 11 CU F 1 604 604 CU CU . AA 11 CU F 1 605 605 CU CU . BA 14 HEA F 1 606 606 HEA HEA . CA 14 HEA F 1 607 607 HEA HEA . DA 15 9Y0 G 1 301 301 9Y0 9Y0 . EA 12 CDL D 1 201 201 CDL CDL . FA 11 CU Q 1 401 401 CU CU . GA 11 CU Q 1 402 402 CU CU . HA 11 CU Q 1 403 403 CU CU . IA 12 CDL R 1 601 601 CDL CDL . JA 12 CDL R 1 602 602 CDL CDL . KA 13 PLM R 1 603 603 PLM PLM . LA 11 CU R 1 604 604 CU CU . MA 14 HEA R 1 605 605 HEA HEA . NA 14 HEA R 1 606 606 HEA HEA . OA 15 9Y0 S 1 301 301 9Y0 9Y0 . PA 12 CDL P 1 201 201 CDL CDL . QA 16 HEM N 1 601 601 HEM HEM . RA 16 HEM N 1 602 602 HEM HEM . SA 12 CDL N 1 603 603 CDL CDL . TA 13 PLM N 1 604 604 PLM PLM . UA 12 CDL N 1 605 605 CDL CDL . VA 12 CDL N 1 606 606 CDL CDL . WA 12 CDL N 1 607 607 CDL CDL . XA 17 MQ9 N 1 608 608 MQ9 MQ9 . YA 17 MQ9 N 1 609 609 MQ9 MQ9 . ZA 17 MQ9 N 1 610 610 MQ9 MQ9 . AB 17 MQ9 N 1 611 611 MQ9 MQ9 . BB 18 FES M 1 501 501 FES FES . CB 12 CDL M 1 502 502 CDL CDL . DB 19 9YF M 1 503 503 9YF 9YF . EB 19 9YF M 1 504 504 9YF 9YF . FB 17 MQ9 O 1 301 301 MQ9 MQ9 . GB 17 MQ9 O 1 302 302 MQ9 MQ9 . HB 20 HEC O 1 303 303 HEC HEC . IB 20 HEC O 1 304 304 HEC HEC . JB 13 PLM B 1 601 601 PLM PLM . KB 16 HEM B 1 602 602 HEM HEM . LB 16 HEM B 1 603 603 HEM HEM . MB 12 CDL B 1 604 604 CDL CDL . NB 12 CDL B 1 605 605 CDL CDL . OB 12 CDL B 1 606 606 CDL CDL . PB 12 CDL B 1 607 607 CDL CDL . QB 17 MQ9 B 1 608 608 MQ9 MQ9 . RB 17 MQ9 B 1 609 609 MQ9 MQ9 . SB 18 FES A 1 501 501 FES FES . TB 19 9YF A 1 502 502 9YF 9YF . UB 19 9YF A 1 503 503 9YF 9YF . VB 20 HEC C 1 301 301 HEC HEC . WB 20 HEC C 1 302 302 HEC HEC . XB 12 CDL C 1 303 303 CDL CDL . YB 17 MQ9 C 1 304 304 MQ9 MQ9 . ZB 17 MQ9 C 1 305 305 MQ9 MQ9 . AC 12 CDL C 1 306 306 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 MQ9 . . . ZA 17 203.388 226.197 221.9 1 43.44 ? C5 MQ9 610 N 1 HETATM 2 C C5M MQ9 . . . ZA 17 203.52 226.896 220.554 1 43.44 ? C5M MQ9 610 N 1 HETATM 3 C C4 MQ9 . . . ZA 17 203.246 224.835 221.913 1 43.44 ? C4 MQ9 610 N 1 HETATM 4 O O4 MQ9 . . . ZA 17 203.235 224.176 220.703 1 43.44 ? O4 MQ9 610 N 1 HETATM 5 C C3 MQ9 . . . ZA 17 203.12 224.133 223.13 1 43.44 ? C3 MQ9 610 N 1 HETATM 6 C C2 MQ9 . . . ZA 17 203.14 224.805 224.295 1 43.44 ? C2 MQ9 610 N 1 HETATM 7 C C1 MQ9 . . . ZA 17 203.285 226.222 224.284 1 43.44 ? C1 MQ9 610 N 1 HETATM 8 O O1 MQ9 . . . ZA 17 203.311 226.962 225.455 1 43.44 ? O1 MQ9 610 N 1 HETATM 9 C C6 MQ9 . . . ZA 17 203.406 226.893 223.096 1 43.44 ? C6 MQ9 610 N 1 HETATM 10 C C3A MQ9 . . . ZA 17 202.976 222.723 223.112 1 43.44 ? C3A MQ9 610 N 1 HETATM 11 C C3B MQ9 . . . ZA 17 202.852 222.035 224.302 1 43.44 ? C3B MQ9 610 N 1 HETATM 12 C C3C MQ9 . . . ZA 17 202.87 222.721 225.509 1 43.44 ? C3C MQ9 610 N 1 HETATM 13 C C3D MQ9 . . . ZA 17 203.014 224.099 225.517 1 43.44 ? C3D MQ9 610 N 1 HETATM 14 C C7 MQ9 . . . ZA 17 203.566 228.404 223.109 1 43.44 ? C7 MQ9 610 N 1 HETATM 15 C C8 MQ9 . . . ZA 17 204.986 228.828 222.756 1 43.44 ? C8 MQ9 610 N 1 HETATM 16 C C9 MQ9 . . . ZA 17 205.978 227.826 223.314 1 43.44 ? C9 MQ9 610 N 1 HETATM 17 C C10 MQ9 . . . ZA 17 206.099 228.055 224.8 1 43.44 ? C10 MQ9 610 N 1 HETATM 18 C C11 MQ9 . . . ZA 17 207.334 227.961 222.604 1 43.44 ? C11 MQ9 610 N 1 HETATM 19 C C12 MQ9 . . . ZA 17 208.271 228.968 223.278 1 43.44 ? C12 MQ9 610 N 1 HETATM 20 C C13 MQ9 . . . ZA 17 208.062 230.415 222.8 1 43.44 ? C13 MQ9 610 N 1 HETATM 21 C C14 MQ9 . . . ZA 17 207.643 231.336 223.948 1 43.44 ? C14 MQ9 610 N 1 HETATM 22 C C15 MQ9 . . . ZA 17 206.354 232.031 223.56 1 43.44 ? C15 MQ9 610 N 1 HETATM 23 C C16 MQ9 . . . ZA 17 208.763 232.317 224.341 1 43.44 ? C16 MQ9 610 N 1 HETATM 24 C C17 MQ9 . . . ZA 17 208.336 233.789 224.57 1 43.44 ? C17 MQ9 610 N 1 HETATM 25 C C18 MQ9 . . . ZA 17 209.386 234.66 225.304 1 43.44 ? C18 MQ9 610 N 1 HETATM 26 C C19 MQ9 . . . ZA 17 210.665 233.914 225.774 1 43.44 ? C19 MQ9 610 N 1 HETATM 27 C C20 MQ9 . . . ZA 17 211.707 233.695 224.679 1 43.44 ? C20 MQ9 610 N 1 HETATM 28 C C21 MQ9 . . . ZA 17 211.242 234.409 227.135 1 43.44 ? C21 MQ9 610 N 1 HETATM 29 C C22 MQ9 . . . ZA 17 212.161 235.656 227.109 1 43.44 ? C22 MQ9 610 N 1 HETATM 30 C C23 MQ9 . . . ZA 17 213.64 235.326 226.794 1 43.44 ? C23 MQ9 610 N 1 HETATM 31 C C24 MQ9 . . . ZA 17 214.618 236.525 226.857 1 43.44 ? C24 MQ9 610 N 1 HETATM 32 C C25 MQ9 . . . ZA 17 215.313 236.804 225.526 1 43.44 ? C25 MQ9 610 N 1 HETATM 33 C C26 MQ9 . . . ZA 17 215.659 236.428 227.993 1 43.44 ? C26 MQ9 610 N 1 HETATM 34 C C27 MQ9 . . . ZA 17 217.056 236.924 227.55 1 43.44 ? C27 MQ9 610 N 1 HETATM 35 C C28 MQ9 . . . ZA 17 218.082 235.807 227.238 1 43.44 ? C28 MQ9 610 N 1 HETATM 36 C C29 MQ9 . . . ZA 17 219.377 235.964 228.057 1 43.44 ? C29 MQ9 610 N 1 HETATM 37 C C30 MQ9 . . . ZA 17 219.126 236.116 229.546 1 43.44 ? C30 MQ9 610 N 1 HETATM 38 C C31 MQ9 . . . ZA 17 220.462 234.921 227.714 1 43.44 ? C31 MQ9 610 N 1 HETATM 39 C C32 MQ9 . . . ZA 17 221.652 235.496 226.922 1 43.44 ? C32 MQ9 610 N 1 HETATM 40 C C33 MQ9 . . . ZA 17 222.7 236.109 227.874 1 43.44 ? C33 MQ9 610 N 1 HETATM 41 C C34 MQ9 . . . ZA 17 223.667 237.139 227.258 1 43.44 ? C34 MQ9 610 N 1 HETATM 42 C C35 MQ9 . . . ZA 17 224.131 238.215 228.242 1 43.44 ? C35 MQ9 610 N 1 HETATM 43 C C36 MQ9 . . . ZA 17 223.046 237.76 225.985 1 43.44 ? C36 MQ9 610 N 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 223 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #