data_7E1Z # _model_server_result.job_id LADeWQgUL8T-zebD49lTog _model_server_result.datetime_utc '2024-10-15 14:26:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e1z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1107}' # _entry.id 7E1Z # _exptl.entry_id 7E1Z _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 7 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E1Z _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E1Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 O N N ? 7 Q N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG B 401 NAG 4 n D NAG 2 D 2 NAG B 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 211 A CYS 211 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? disulf ? disulf2 A SG CYS 518 A CYS 518 1_555 A SG CYS 556 A CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 126 B CYS 126 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 159 B CYS 159 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? disulf ? disulf5 B SG CYS 213 B CYS 213 1_555 B SG CYS 276 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 B ND2 ASN 158 B ASN 158 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 B ND2 ASN 265 B ASN 265 1_555 P C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A O VAL 329 A VAL 329 1_555 F NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc2 A O VAL 332 A VAL 332 1_555 F NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc3 A OD2 ASP 717 A ASP 717 1_555 I MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc4 A O ALA 745 A ALA 745 1_555 H NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc5 A OD1 ASP 747 A ASP 747 1_555 H NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc6 A O THR 779 A THR 779 1_555 E NA NA . A NA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc7 A OG SER 782 A SER 782 1_555 E NA NA . A NA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? metalc ? metalc8 A OG SER 782 A SER 782 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc9 A OD2 ASP 815 A ASP 815 1_555 E NA NA . A NA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc10 A OD1 ASP 815 A ASP 815 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc11 A OE1 GLN 930 A GLN 930 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc12 F NA NA . A NA 1102 1_555 R O HOH . A HOH 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7E1Z _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NA A 1 1101 1101 NA NA . F 5 NA A 1 1102 1102 NA NA . G 5 NA A 1 1103 1103 NA NA . H 5 NA A 1 1104 1104 NA NA . I 6 MG A 1 1105 1301 MG MG . J 7 Y01 A 1 1106 1502 Y01 LIG . K 7 Y01 A 1 1107 1503 Y01 LIG . L 7 Y01 A 1 1108 1504 Y01 LIG . M 7 Y01 A 1 1109 1505 Y01 LIG . N 8 PC1 A 1 1110 1601 PC1 LIG . O 7 Y01 B 1 401 1506 Y01 LIG . P 9 NAG B 1 402 403 NAG NAG . Q 7 Y01 C 1 1501 1501 Y01 LIG . R 10 HOH A 1 1201 1403 HOH HOH . R 10 HOH A 2 1202 1404 HOH HOH . R 10 HOH A 3 1203 1402 HOH HOH . R 10 HOH A 4 1204 1401 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . K 7 86.627 112.147 106.075 1 48.91 ? CAA Y01 1107 A 1 HETATM 2 C CBA Y01 . . . K 7 88.105 111.957 105.724 1 48.91 ? CBA Y01 1107 A 1 HETATM 3 C CAB Y01 . . . K 7 88.907 111.738 107.017 1 48.91 ? CAB Y01 1107 A 1 HETATM 4 C CAN Y01 . . . K 7 88.635 113.215 104.992 1 48.91 ? CAN Y01 1107 A 1 HETATM 5 C CAJ Y01 . . . K 7 88.055 113.273 103.564 1 48.91 ? CAJ Y01 1107 A 1 HETATM 6 C CAO Y01 . . . K 7 89.172 112.937 102.536 1 48.91 ? CAO Y01 1107 A 1 HETATM 7 C CBB Y01 . . . K 7 88.889 113.649 101.186 1 48.91 ? CBB Y01 1107 A 1 HETATM 8 C CAC Y01 . . . K 7 87.642 113.032 100.556 1 48.91 ? CAC Y01 1107 A 1 HETATM 9 C CBE Y01 . . . K 7 90.121 113.498 100.307 1 48.91 ? CBE Y01 1107 A 1 HETATM 10 C CAP Y01 . . . K 7 90.217 112.182 99.671 1 48.91 ? CAP Y01 1107 A 1 HETATM 11 C CAQ Y01 . . . K 7 91.184 112.43 98.489 1 48.91 ? CAQ Y01 1107 A 1 HETATM 12 C CBG Y01 . . . K 7 91.26 114.045 98.346 1 48.91 ? CBG Y01 1107 A 1 HETATM 13 C CBI Y01 . . . K 7 90.177 114.517 99.088 1 48.91 ? CBI Y01 1107 A 1 HETATM 14 C CAE Y01 . . . K 7 90.342 115.965 99.547 1 48.91 ? CAE Y01 1107 A 1 HETATM 15 C CAU Y01 . . . K 7 88.797 114.293 98.272 1 48.91 ? CAU Y01 1107 A 1 HETATM 16 C CAS Y01 . . . K 7 88.851 114.943 96.878 1 48.91 ? CAS Y01 1107 A 1 HETATM 17 C CBF Y01 . . . K 7 90.016 114.478 96.085 1 48.91 ? CBF Y01 1107 A 1 HETATM 18 C CBD Y01 . . . K 7 91.304 114.663 96.818 1 48.91 ? CBD Y01 1107 A 1 HETATM 19 C CAK Y01 . . . K 7 92.508 114.079 96.026 1 48.91 ? CAK Y01 1107 A 1 HETATM 20 C CAI Y01 . . . K 7 92.079 113.617 94.519 1 48.91 ? CAI Y01 1107 A 1 HETATM 21 C CAZ Y01 . . . K 7 91.227 114.664 93.757 1 48.91 ? CAZ Y01 1107 A 1 HETATM 22 C CAV Y01 . . . K 7 90.79 114.217 92.3 1 48.91 ? CAV Y01 1107 A 1 HETATM 23 C CBH Y01 . . . K 7 90.077 115.216 94.621 1 48.91 ? CBH Y01 1107 A 1 HETATM 24 C CAD Y01 . . . K 7 90.463 116.663 94.919 1 48.91 ? CAD Y01 1107 A 1 HETATM 25 C CAT Y01 . . . K 7 88.671 115.294 93.864 1 48.91 ? CAT Y01 1107 A 1 HETATM 26 C CAR Y01 . . . K 7 88.8 115.892 92.494 1 48.91 ? CAR Y01 1107 A 1 HETATM 27 C CBC Y01 . . . K 7 89.974 115.294 91.608 1 48.91 ? CBC Y01 1107 A 1 HETATM 28 O OAW Y01 . . . K 7 89.423 114.755 90.445 1 48.91 ? OAW Y01 1107 A 1 HETATM 29 C CAY Y01 . . . K 7 90.004 115.25 89.243 1 48.91 ? CAY Y01 1107 A 1 HETATM 30 O OAG Y01 . . . K 7 90.35 114.493 88.401 1 48.91 ? OAG Y01 1107 A 1 HETATM 31 C CAM Y01 . . . K 7 90.18 116.767 89.033 1 48.91 ? CAM Y01 1107 A 1 HETATM 32 C CAL Y01 . . . K 7 90.287 117.068 87.523 1 48.91 ? CAL Y01 1107 A 1 HETATM 33 C CAX Y01 . . . K 7 90.442 118.578 87.304 1 48.91 ? CAX Y01 1107 A 1 HETATM 34 O OAH Y01 . . . K 7 90.182 119.381 88.236 1 48.91 ? OAH Y01 1107 A 1 HETATM 35 O OAF Y01 . . . K 7 90.829 119.016 86.19 1 48.91 ? OAF Y01 1107 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #