data_7E1Z # _model_server_result.job_id MojxV4uM52_xG0gam1ukZw _model_server_result.datetime_utc '2024-12-27 00:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e1z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 7E1Z # _exptl.entry_id 7E1Z _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 7 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E1Z _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E1Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 O N N ? 7 Q N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG B 401 NAG 4 n D NAG 2 D 2 NAG B 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 211 A CYS 211 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? disulf ? disulf2 A SG CYS 518 A CYS 518 1_555 A SG CYS 556 A CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 126 B CYS 126 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 159 B CYS 159 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? disulf ? disulf5 B SG CYS 213 B CYS 213 1_555 B SG CYS 276 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 B ND2 ASN 158 B ASN 158 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 B ND2 ASN 265 B ASN 265 1_555 P C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A O VAL 329 A VAL 329 1_555 F NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc2 A O VAL 332 A VAL 332 1_555 F NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc3 A OD2 ASP 717 A ASP 717 1_555 I MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc4 A O ALA 745 A ALA 745 1_555 H NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc5 A OD1 ASP 747 A ASP 747 1_555 H NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc6 A O THR 779 A THR 779 1_555 E NA NA . A NA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc7 A OG SER 782 A SER 782 1_555 E NA NA . A NA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? metalc ? metalc8 A OG SER 782 A SER 782 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc9 A OD2 ASP 815 A ASP 815 1_555 E NA NA . A NA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc10 A OD1 ASP 815 A ASP 815 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc11 A OE1 GLN 930 A GLN 930 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc12 F NA NA . A NA 1102 1_555 R O HOH . A HOH 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 547 n n CBA CAB Y01 sing 548 n n CBA CAN Y01 sing 549 n n CAN CAJ Y01 sing 550 n n CAJ CAO Y01 sing 551 n n CAO CBB Y01 sing 552 n n CBB CAC Y01 sing 553 n n CBB CBE Y01 sing 554 n n CBE CAP Y01 sing 555 n n CBE CBI Y01 sing 556 n n CAP CAQ Y01 sing 557 n n CAQ CBG Y01 sing 558 n n CBG CBI Y01 sing 559 n n CBG CBD Y01 sing 560 n n CBI CAE Y01 sing 561 n n CBI CAU Y01 sing 562 n n CAU CAS Y01 sing 563 n n CAS CBF Y01 sing 564 n n CBF CBD Y01 sing 565 n n CBF CBH Y01 sing 566 n n CBD CAK Y01 sing 567 n n CAK CAI Y01 sing 568 n n CAI CAZ Y01 doub 569 n n CAZ CAV Y01 sing 570 n n CAZ CBH Y01 sing 571 n n CAV CBC Y01 sing 572 n n CBH CAD Y01 sing 573 n n CBH CAT Y01 sing 574 n n CAT CAR Y01 sing 575 n n CAR CBC Y01 sing 576 n n CBC OAW Y01 sing 577 n n OAW CAY Y01 sing 578 n n CAY OAG Y01 doub 579 n n CAY CAM Y01 sing 580 n n CAM CAL Y01 sing 581 n n CAL CAX Y01 sing 582 n n CAX OAH Y01 sing 583 n n CAX OAF Y01 doub 584 n n CAA HAA1 Y01 sing 585 n n CAA HAA2 Y01 sing 586 n n CAA HAA3 Y01 sing 587 n n CBA HBA Y01 sing 588 n n CAB HAB1 Y01 sing 589 n n CAB HAB2 Y01 sing 590 n n CAB HAB3 Y01 sing 591 n n CAN HAN1 Y01 sing 592 n n CAN HAN2 Y01 sing 593 n n CAJ HAJ1 Y01 sing 594 n n CAJ HAJ2 Y01 sing 595 n n CAO HAO1 Y01 sing 596 n n CAO HAO2 Y01 sing 597 n n CBB HBB Y01 sing 598 n n CAC HAC1 Y01 sing 599 n n CAC HAC2 Y01 sing 600 n n CAC HAC3 Y01 sing 601 n n CBE HBE Y01 sing 602 n n CAP HAP1 Y01 sing 603 n n CAP HAP2 Y01 sing 604 n n CAQ HAQ1 Y01 sing 605 n n CAQ HAQ2 Y01 sing 606 n n CBG HBG Y01 sing 607 n n CBD HBD Y01 sing 608 n n CAE HAE1 Y01 sing 609 n n CAE HAE2 Y01 sing 610 n n CAE HAE3 Y01 sing 611 n n CAU HAU1 Y01 sing 612 n n CAU HAU2 Y01 sing 613 n n CAS HAS1 Y01 sing 614 n n CAS HAS2 Y01 sing 615 n n CBF HBF Y01 sing 616 n n CAK HAK1 Y01 sing 617 n n CAK HAK2 Y01 sing 618 n n CAI HAI Y01 sing 619 n n CAV HAV1 Y01 sing 620 n n CAV HAV2 Y01 sing 621 n n CBC HBC Y01 sing 622 n n CAD HAD1 Y01 sing 623 n n CAD HAD2 Y01 sing 624 n n CAD HAD3 Y01 sing 625 n n CAT HAT1 Y01 sing 626 n n CAT HAT2 Y01 sing 627 n n CAR HAR1 Y01 sing 628 n n CAR HAR2 Y01 sing 629 n n CAM HAM1 Y01 sing 630 n n CAM HAM2 Y01 sing 631 n n CAL HAL1 Y01 sing 632 n n CAL HAL2 Y01 sing 633 n n OAH HAH Y01 sing 634 n n # _atom_sites.entry_id 7E1Z _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NA A 1 1101 1101 NA NA . F 5 NA A 1 1102 1102 NA NA . G 5 NA A 1 1103 1103 NA NA . H 5 NA A 1 1104 1104 NA NA . I 6 MG A 1 1105 1301 MG MG . J 7 Y01 A 1 1106 1502 Y01 LIG . K 7 Y01 A 1 1107 1503 Y01 LIG . L 7 Y01 A 1 1108 1504 Y01 LIG . M 7 Y01 A 1 1109 1505 Y01 LIG . N 8 PC1 A 1 1110 1601 PC1 LIG . O 7 Y01 B 1 401 1506 Y01 LIG . P 9 NAG B 1 402 403 NAG NAG . Q 7 Y01 C 1 1501 1501 Y01 LIG . R 10 HOH A 1 1201 1403 HOH HOH . R 10 HOH A 2 1202 1404 HOH HOH . R 10 HOH A 3 1203 1402 HOH HOH . R 10 HOH A 4 1204 1401 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . O 7 105.99 122.331 114.059 1 43.33 ? CAA Y01 401 B 1 HETATM 2 C CBA Y01 . . . O 7 105.981 122.573 115.57 1 43.33 ? CBA Y01 401 B 1 HETATM 3 C CAB Y01 . . . O 7 105.487 123.998 115.861 1 43.33 ? CAB Y01 401 B 1 HETATM 4 C CAN Y01 . . . O 7 105.029 121.56 116.248 1 43.33 ? CAN Y01 401 B 1 HETATM 5 C CAJ Y01 . . . O 7 105.529 121.265 117.676 1 43.33 ? CAJ Y01 401 B 1 HETATM 6 C CAO Y01 . . . O 7 104.343 120.765 118.544 1 43.33 ? CAO Y01 401 B 1 HETATM 7 C CBB Y01 . . . O 7 103.539 121.992 119.031 1 43.33 ? CBB Y01 401 B 1 HETATM 8 C CAC Y01 . . . O 7 102.935 122.698 117.821 1 43.33 ? CAC Y01 401 B 1 HETATM 9 C CBE Y01 . . . O 7 104.486 122.922 119.754 1 43.33 ? CBE Y01 401 B 1 HETATM 10 C CAP Y01 . . . O 7 103.879 124.222 120.044 1 43.33 ? CAP Y01 401 B 1 HETATM 11 C CAQ Y01 . . . O 7 104.674 124.73 121.271 1 43.33 ? CAQ Y01 401 B 1 HETATM 12 C CBG Y01 . . . O 7 105.493 123.432 121.795 1 43.33 ? CBG Y01 401 B 1 HETATM 13 C CBI Y01 . . . O 7 104.85 122.359 121.189 1 43.33 ? CBI Y01 401 B 1 HETATM 14 C CAE Y01 . . . O 7 105.718 121.103 121.112 1 43.33 ? CAE Y01 401 B 1 HETATM 15 C CAU Y01 . . . O 7 103.408 122.087 121.882 1 43.33 ? CAU Y01 401 B 1 HETATM 16 C CAS Y01 . . . O 7 103.48 121.986 123.42 1 43.33 ? CAS Y01 401 B 1 HETATM 17 C CBF Y01 . . . O 7 104.277 123.068 124.06 1 43.33 ? CBF Y01 401 B 1 HETATM 18 C CBD Y01 . . . O 7 105.622 123.202 123.42 1 43.33 ? CBD Y01 401 B 1 HETATM 19 C CAK Y01 . . . O 7 106.498 124.309 124.072 1 43.33 ? CAK Y01 401 B 1 HETATM 20 C CAI Y01 . . . O 7 106.649 124.062 125.678 1 43.33 ? CAI Y01 401 B 1 HETATM 21 C CAZ Y01 . . . O 7 105.293 123.85 126.401 1 43.33 ? CAZ Y01 401 B 1 HETATM 22 C CAV Y01 . . . O 7 105.451 123.484 127.936 1 43.33 ? CAV Y01 401 B 1 HETATM 23 C CBH Y01 . . . O 7 104.374 122.84 125.687 1 43.33 ? CBH Y01 401 B 1 HETATM 24 C CAD Y01 . . . O 7 105.059 121.485 125.864 1 43.33 ? CAD Y01 401 B 1 HETATM 25 C CAT Y01 . . . O 7 102.946 122.69 126.394 1 43.33 ? CAT Y01 401 B 1 HETATM 26 C CAR Y01 . . . O 7 102.852 123.302 127.76 1 43.33 ? CAR Y01 401 B 1 HETATM 27 C CBC Y01 . . . O 7 104.157 123.09 128.633 1 43.33 ? CBC Y01 401 B 1 HETATM 28 O OAW Y01 . . . O 7 104.038 123.862 129.791 1 43.33 ? OAW Y01 401 B 1 HETATM 29 C CAY Y01 . . . O 7 104.207 123.142 131.01 1 43.33 ? CAY Y01 401 B 1 HETATM 30 O OAG Y01 . . . O 7 103.29 123.004 131.746 1 43.33 ? OAG Y01 401 B 1 HETATM 31 C CAM Y01 . . . O 7 105.581 122.545 131.375 1 43.33 ? CAM Y01 401 B 1 HETATM 32 C CAL Y01 . . . O 7 106.036 123.095 132.744 1 43.33 ? CAL Y01 401 B 1 HETATM 33 C CAX Y01 . . . O 7 105.29 122.369 133.872 1 43.33 ? CAX Y01 401 B 1 HETATM 34 O OAH Y01 . . . O 7 105.855 121.443 134.506 1 43.33 ? OAH Y01 401 B 1 HETATM 35 O OAF Y01 . . . O 7 104.113 122.703 134.164 1 43.33 ? OAF Y01 401 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 816 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 35 #