data_7E21 # _model_server_result.job_id Y50NbdLyYCgNvZcX10yvmw _model_server_result.datetime_utc '2024-12-21 15:08:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1110}' # _entry.id 7E21 # _exptl.entry_id 7E21 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E21 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 L N N ? 8 M N N ? 8 N N N ? 8 P N N ? 8 S N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG B 401 NAG 4 n D NAG 2 D 2 NAG B 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 211 A CYS 211 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 518 A CYS 518 1_555 A SG CYS 556 A CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 126 B CYS 126 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 159 B CYS 159 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? disulf ? disulf5 B SG CYS 213 B CYS 213 1_555 B SG CYS 276 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 B ND2 ASN 158 B ASN 158 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 B ND2 ASN 265 B ASN 265 1_555 R C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A O VAL 329 A VAL 329 1_555 F NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc2 A O ALA 330 A ALA 330 1_555 E NA NA . A NA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc3 A O ALA 728 A ALA 728 1_555 H NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.181 ? metalc ? metalc4 A OD2 ASP 747 A ASP 747 1_555 H NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc5 A O TYR 778 A TYR 778 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc6 A OG1 THR 781 A THR 781 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc7 A OG SER 782 A SER 782 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? metalc ? metalc8 A OD1 ASN 783 A ASN 783 1_555 E NA NA . A NA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc9 A OE1 GLU 786 A GLU 786 1_555 E NA NA . A NA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc10 A OE1 GLN 930 A GLN 930 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc11 E NA NA . A NA 1101 1_555 T O HOH . A HOH 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 596 n n CBA CAB Y01 sing 597 n n CBA CAN Y01 sing 598 n n CAN CAJ Y01 sing 599 n n CAJ CAO Y01 sing 600 n n CAO CBB Y01 sing 601 n n CBB CAC Y01 sing 602 n n CBB CBE Y01 sing 603 n n CBE CAP Y01 sing 604 n n CBE CBI Y01 sing 605 n n CAP CAQ Y01 sing 606 n n CAQ CBG Y01 sing 607 n n CBG CBI Y01 sing 608 n n CBG CBD Y01 sing 609 n n CBI CAE Y01 sing 610 n n CBI CAU Y01 sing 611 n n CAU CAS Y01 sing 612 n n CAS CBF Y01 sing 613 n n CBF CBD Y01 sing 614 n n CBF CBH Y01 sing 615 n n CBD CAK Y01 sing 616 n n CAK CAI Y01 sing 617 n n CAI CAZ Y01 doub 618 n n CAZ CAV Y01 sing 619 n n CAZ CBH Y01 sing 620 n n CAV CBC Y01 sing 621 n n CBH CAD Y01 sing 622 n n CBH CAT Y01 sing 623 n n CAT CAR Y01 sing 624 n n CAR CBC Y01 sing 625 n n CBC OAW Y01 sing 626 n n OAW CAY Y01 sing 627 n n CAY OAG Y01 doub 628 n n CAY CAM Y01 sing 629 n n CAM CAL Y01 sing 630 n n CAL CAX Y01 sing 631 n n CAX OAH Y01 sing 632 n n CAX OAF Y01 doub 633 n n CAA HAA1 Y01 sing 634 n n CAA HAA2 Y01 sing 635 n n CAA HAA3 Y01 sing 636 n n CBA HBA Y01 sing 637 n n CAB HAB1 Y01 sing 638 n n CAB HAB2 Y01 sing 639 n n CAB HAB3 Y01 sing 640 n n CAN HAN1 Y01 sing 641 n n CAN HAN2 Y01 sing 642 n n CAJ HAJ1 Y01 sing 643 n n CAJ HAJ2 Y01 sing 644 n n CAO HAO1 Y01 sing 645 n n CAO HAO2 Y01 sing 646 n n CBB HBB Y01 sing 647 n n CAC HAC1 Y01 sing 648 n n CAC HAC2 Y01 sing 649 n n CAC HAC3 Y01 sing 650 n n CBE HBE Y01 sing 651 n n CAP HAP1 Y01 sing 652 n n CAP HAP2 Y01 sing 653 n n CAQ HAQ1 Y01 sing 654 n n CAQ HAQ2 Y01 sing 655 n n CBG HBG Y01 sing 656 n n CBD HBD Y01 sing 657 n n CAE HAE1 Y01 sing 658 n n CAE HAE2 Y01 sing 659 n n CAE HAE3 Y01 sing 660 n n CAU HAU1 Y01 sing 661 n n CAU HAU2 Y01 sing 662 n n CAS HAS1 Y01 sing 663 n n CAS HAS2 Y01 sing 664 n n CBF HBF Y01 sing 665 n n CAK HAK1 Y01 sing 666 n n CAK HAK2 Y01 sing 667 n n CAI HAI Y01 sing 668 n n CAV HAV1 Y01 sing 669 n n CAV HAV2 Y01 sing 670 n n CBC HBC Y01 sing 671 n n CAD HAD1 Y01 sing 672 n n CAD HAD2 Y01 sing 673 n n CAD HAD3 Y01 sing 674 n n CAT HAT1 Y01 sing 675 n n CAT HAT2 Y01 sing 676 n n CAR HAR1 Y01 sing 677 n n CAR HAR2 Y01 sing 678 n n CAM HAM1 Y01 sing 679 n n CAM HAM2 Y01 sing 680 n n CAL HAL1 Y01 sing 681 n n CAL HAL2 Y01 sing 682 n n OAH HAH Y01 sing 683 n n # _atom_sites.entry_id 7E21 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NA A 1 1101 1101 NA NA . F 5 NA A 1 1102 1102 NA NA . G 5 NA A 1 1103 1103 NA NA . H 5 NA A 1 1104 1104 NA NA . I 6 MG A 1 1105 1301 MG MG . J 7 AGS A 1 1106 1401 AGS LIG . K 8 Y01 A 1 1107 1502 Y01 LIG . L 8 Y01 A 1 1108 1503 Y01 LIG . M 8 Y01 A 1 1109 1504 Y01 LIG . N 8 Y01 A 1 1110 1506 Y01 LIG . O 9 PC1 A 1 1111 1602 PC1 LIG . P 8 Y01 B 1 401 1505 Y01 LIG . Q 9 PC1 B 1 402 1601 PC1 LIG . R 10 NAG B 1 403 403 NAG NAG . S 8 Y01 C 1 1501 1501 Y01 LIG . T 11 HOH A 1 1201 1203 HOH HOH . T 11 HOH A 2 1202 1201 HOH HOH . T 11 HOH A 3 1203 1205 HOH HOH . T 11 HOH A 4 1204 1204 HOH HOH . T 11 HOH A 5 1205 1202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . N 8 112.229 121.301 116.623 1 56.27 ? CAA Y01 1110 A 1 HETATM 2 C CBA Y01 . . . N 8 111.838 122.764 116.85 1 56.27 ? CBA Y01 1110 A 1 HETATM 3 C CAB Y01 . . . N 8 110.333 122.94 116.583 1 56.27 ? CAB Y01 1110 A 1 HETATM 4 C CAN Y01 . . . N 8 112.152 123.162 118.313 1 56.27 ? CAN Y01 1110 A 1 HETATM 5 C CAJ Y01 . . . N 8 111.224 122.383 119.267 1 56.27 ? CAJ Y01 1110 A 1 HETATM 6 C CAO Y01 . . . N 8 109.867 123.13 119.397 1 56.27 ? CAO Y01 1110 A 1 HETATM 7 C CBB Y01 . . . N 8 109.397 123.101 120.875 1 56.27 ? CBB Y01 1110 A 1 HETATM 8 C CAC Y01 . . . N 8 108.124 123.939 121.007 1 56.27 ? CAC Y01 1110 A 1 HETATM 9 C CBE Y01 . . . N 8 110.537 123.585 121.766 1 56.27 ? CBE Y01 1110 A 1 HETATM 10 C CAP Y01 . . . N 8 110.582 125.044 121.931 1 56.27 ? CAP Y01 1110 A 1 HETATM 11 C CAQ Y01 . . . N 8 111.264 125.259 123.303 1 56.27 ? CAQ Y01 1110 A 1 HETATM 12 C CBG Y01 . . . N 8 111.328 123.786 123.983 1 56.27 ? CBG Y01 1110 A 1 HETATM 13 C CBI Y01 . . . N 8 110.435 123.007 123.245 1 56.27 ? CBI Y01 1110 A 1 HETATM 14 C CAE Y01 . . . N 8 110.773 121.515 123.304 1 56.27 ? CAE Y01 1110 A 1 HETATM 15 C CAU Y01 . . . N 8 108.902 123.309 123.679 1 56.27 ? CAU Y01 1110 A 1 HETATM 16 C CAS Y01 . . . N 8 108.69 123.117 125.19 1 56.27 ? CAS Y01 1110 A 1 HETATM 17 C CBF Y01 . . . N 8 109.646 123.913 126.006 1 56.27 ? CBF Y01 1110 A 1 HETATM 18 C CBD Y01 . . . N 8 111.077 123.685 125.614 1 56.27 ? CBD Y01 1110 A 1 HETATM 19 C CAK Y01 . . . N 8 112.06 124.639 126.357 1 56.27 ? CAK Y01 1110 A 1 HETATM 20 C CAI Y01 . . . N 8 111.45 125.175 127.775 1 56.27 ? CAI Y01 1110 A 1 HETATM 21 C CAZ Y01 . . . N 8 110.552 124.131 128.489 1 56.27 ? CAZ Y01 1110 A 1 HETATM 22 C CAV Y01 . . . N 8 110.107 124.533 129.956 1 56.27 ? CAV Y01 1110 A 1 HETATM 23 C CBH Y01 . . . N 8 109.377 123.661 127.609 1 56.27 ? CBH Y01 1110 A 1 HETATM 24 C CAD Y01 . . . N 8 109.316 122.144 127.799 1 56.27 ? CAD Y01 1110 A 1 HETATM 25 C CAT Y01 . . . N 8 107.961 124.212 128.105 1 56.27 ? CAT Y01 1110 A 1 HETATM 26 C CAR Y01 . . . N 8 107.651 123.844 129.525 1 56.27 ? CAR Y01 1110 A 1 HETATM 27 C CBC Y01 . . . N 8 108.937 123.693 130.437 1 56.27 ? CBC Y01 1110 A 1 HETATM 28 O OAW Y01 . . . N 8 108.613 124.079 131.74 1 56.27 ? OAW Y01 1110 A 1 HETATM 29 C CAY Y01 . . . N 8 108.716 123.026 132.695 1 56.27 ? CAY Y01 1110 A 1 HETATM 30 O OAG Y01 . . . N 8 107.88 122.896 133.525 1 56.27 ? OAG Y01 1110 A 1 HETATM 31 C CAM Y01 . . . N 8 109.915 122.056 132.649 1 56.27 ? CAM Y01 1110 A 1 HETATM 32 C CAL Y01 . . . N 8 110.178 121.495 134.063 1 56.27 ? CAL Y01 1110 A 1 HETATM 33 C CAX Y01 . . . N 8 111.631 121.013 134.159 1 56.27 ? CAX Y01 1110 A 1 HETATM 34 O OAH Y01 . . . N 8 112.36 121.006 133.135 1 56.27 ? OAH Y01 1110 A 1 HETATM 35 O OAF Y01 . . . N 8 112.094 120.625 135.263 1 56.27 ? OAF Y01 1110 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 35 #