data_7E21 # _model_server_result.job_id xPcFxtwpJB7-xEnMUHZ61A _model_server_result.datetime_utc '2024-12-21 14:47:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":403}' # _entry.id 7E21 # _exptl.entry_id 7E21 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E21 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG B 401 NAG 4 n D NAG 2 D 2 NAG B 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 211 A CYS 211 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 518 A CYS 518 1_555 A SG CYS 556 A CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 126 B CYS 126 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 159 B CYS 159 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? disulf ? disulf5 B SG CYS 213 B CYS 213 1_555 B SG CYS 276 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 B ND2 ASN 158 B ASN 158 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 B ND2 ASN 265 B ASN 265 1_555 R C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A O VAL 329 A VAL 329 1_555 F NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc2 A O ALA 330 A ALA 330 1_555 E NA NA . A NA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc3 A O ALA 728 A ALA 728 1_555 H NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.181 ? metalc ? metalc4 A OD2 ASP 747 A ASP 747 1_555 H NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc5 A O TYR 778 A TYR 778 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc6 A OG1 THR 781 A THR 781 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc7 A OG SER 782 A SER 782 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? metalc ? metalc8 A OD1 ASN 783 A ASN 783 1_555 E NA NA . A NA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc9 A OE1 GLU 786 A GLU 786 1_555 E NA NA . A NA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc10 A OE1 GLN 930 A GLN 930 1_555 G NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc11 E NA NA . A NA 1101 1_555 T O HOH . A HOH 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 286 n n C1 O1 NAG sing 287 n n C1 O5 NAG sing 288 n n C1 H1 NAG sing 289 n n C2 C3 NAG sing 290 n n C2 N2 NAG sing 291 n n C2 H2 NAG sing 292 n n C3 C4 NAG sing 293 n n C3 O3 NAG sing 294 n n C3 H3 NAG sing 295 n n C4 C5 NAG sing 296 n n C4 O4 NAG sing 297 n n C4 H4 NAG sing 298 n n C5 C6 NAG sing 299 n n C5 O5 NAG sing 300 n n C5 H5 NAG sing 301 n n C6 O6 NAG sing 302 n n C6 H61 NAG sing 303 n n C6 H62 NAG sing 304 n n C7 C8 NAG sing 305 n n C7 N2 NAG sing 306 n n C7 O7 NAG doub 307 n n C8 H81 NAG sing 308 n n C8 H82 NAG sing 309 n n C8 H83 NAG sing 310 n n N2 HN2 NAG sing 311 n n O1 HO1 NAG sing 312 n n O3 HO3 NAG sing 313 n n O4 HO4 NAG sing 314 n n O6 HO6 NAG sing 315 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7E21 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NA A 1 1101 1101 NA NA . F 5 NA A 1 1102 1102 NA NA . G 5 NA A 1 1103 1103 NA NA . H 5 NA A 1 1104 1104 NA NA . I 6 MG A 1 1105 1301 MG MG . J 7 AGS A 1 1106 1401 AGS LIG . K 8 Y01 A 1 1107 1502 Y01 LIG . L 8 Y01 A 1 1108 1503 Y01 LIG . M 8 Y01 A 1 1109 1504 Y01 LIG . N 8 Y01 A 1 1110 1506 Y01 LIG . O 9 PC1 A 1 1111 1602 PC1 LIG . P 8 Y01 B 1 401 1505 Y01 LIG . Q 9 PC1 B 1 402 1601 PC1 LIG . R 10 NAG B 1 403 403 NAG NAG . S 8 Y01 C 1 1501 1501 Y01 LIG . T 11 HOH A 1 1201 1203 HOH HOH . T 11 HOH A 2 1202 1201 HOH HOH . T 11 HOH A 3 1203 1205 HOH HOH . T 11 HOH A 4 1204 1204 HOH HOH . T 11 HOH A 5 1205 1202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . R 10 131.892 87.239 164.003 1 77.52 ? C1 NAG 403 B 1 HETATM 2 C C2 NAG . . . R 10 132.797 86.171 163.376 1 77.52 ? C2 NAG 403 B 1 HETATM 3 C C3 NAG . . . R 10 132.13 84.798 163.427 1 77.52 ? C3 NAG 403 B 1 HETATM 4 C C4 NAG . . . R 10 131.72 84.458 164.852 1 77.52 ? C4 NAG 403 B 1 HETATM 5 C C5 NAG . . . R 10 130.792 85.546 165.375 1 77.52 ? C5 NAG 403 B 1 HETATM 6 C C6 NAG . . . R 10 130.372 85.327 166.809 1 77.52 ? C6 NAG 403 B 1 HETATM 7 C C7 NAG . . . R 10 134.332 87.027 161.672 1 77.52 ? C7 NAG 403 B 1 HETATM 8 C C8 NAG . . . R 10 134.532 87.318 160.216 1 77.52 ? C8 NAG 403 B 1 HETATM 9 N N2 NAG . . . R 10 133.147 86.515 162.009 1 77.52 ? N2 NAG 403 B 1 HETATM 10 O O3 NAG . . . R 10 133.034 83.815 162.936 1 77.52 ? O3 NAG 403 B 1 HETATM 11 O O4 NAG . . . R 10 131.066 83.196 164.886 1 77.52 ? O4 NAG 403 B 1 HETATM 12 O O5 NAG . . . R 10 131.471 86.811 165.327 1 77.52 ? O5 NAG 403 B 1 HETATM 13 O O6 NAG . . . R 10 129.128 84.645 166.886 1 77.52 ? O6 NAG 403 B 1 HETATM 14 O O7 NAG . . . R 10 135.203 87.25 162.507 1 77.52 ? O7 NAG 403 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 846 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 14 #