data_7E24
#
_model_server_result.job_id            huV1O0oZrMqzrEy6K63MBw 
_model_server_result.datetime_utc      '2024-12-28 22:54:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7e24 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    7E24 
#
_exptl.entry_id    7E24 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7E24 
_cell.length_a            71.332 
_cell.length_b            68.664 
_cell.length_c            114.675 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7E24 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     7E24 
_atom_sites.fract_transf_matrix[1][1]    0.014019 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014564 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00872 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 301 301 NAP NAP . 
F 2 NAP B 1 301 301 NAP NAP . 
G 2 NAP C 1 301 301 NAP NAP . 
H 2 NAP D 1 301 301 NAP NAP . 
I 3 HOH A 1 401 403 HOH HOH . 
I 3 HOH A 2 402 402 HOH HOH . 
I 3 HOH A 3 403 408 HOH HOH . 
I 3 HOH A 4 404 401 HOH HOH . 
I 3 HOH A 5 405 407 HOH HOH . 
I 3 HOH A 6 406 416 HOH HOH . 
I 3 HOH A 7 407 412 HOH HOH . 
I 3 HOH A 8 408 411 HOH HOH . 
I 3 HOH A 9 409 406 HOH HOH . 
I 3 HOH A 10 410 409 HOH HOH . 
I 3 HOH A 11 411 404 HOH HOH . 
I 3 HOH A 12 412 405 HOH HOH . 
I 3 HOH A 13 413 410 HOH HOH . 
I 3 HOH A 14 414 413 HOH HOH . 
I 3 HOH A 15 415 415 HOH HOH . 
I 3 HOH A 16 416 414 HOH HOH . 
I 3 HOH A 17 417 417 HOH HOH . 
I 3 HOH A 18 418 418 HOH HOH . 
J 3 HOH B 1 401 401 HOH HOH . 
J 3 HOH B 2 402 404 HOH HOH . 
J 3 HOH B 3 403 407 HOH HOH . 
J 3 HOH B 4 404 418 HOH HOH . 
J 3 HOH B 5 405 405 HOH HOH . 
J 3 HOH B 6 406 415 HOH HOH . 
J 3 HOH B 7 407 406 HOH HOH . 
J 3 HOH B 8 408 414 HOH HOH . 
J 3 HOH B 9 409 403 HOH HOH . 
J 3 HOH B 10 410 416 HOH HOH . 
J 3 HOH B 11 411 402 HOH HOH . 
J 3 HOH B 12 412 410 HOH HOH . 
J 3 HOH B 13 413 411 HOH HOH . 
J 3 HOH B 14 414 417 HOH HOH . 
J 3 HOH B 15 415 412 HOH HOH . 
J 3 HOH B 16 416 408 HOH HOH . 
J 3 HOH B 17 417 413 HOH HOH . 
J 3 HOH B 18 418 409 HOH HOH . 
J 3 HOH B 19 419 420 HOH HOH . 
J 3 HOH B 20 420 419 HOH HOH . 
J 3 HOH B 21 421 421 HOH HOH . 
J 3 HOH B 22 422 422 HOH HOH . 
J 3 HOH B 23 423 423 HOH HOH . 
J 3 HOH B 24 424 424 HOH HOH . 
J 3 HOH B 25 425 425 HOH HOH . 
J 3 HOH B 26 426 426 HOH HOH . 
K 3 HOH C 1 401 403 HOH HOH . 
K 3 HOH C 2 402 412 HOH HOH . 
K 3 HOH C 3 403 402 HOH HOH . 
K 3 HOH C 4 404 401 HOH HOH . 
K 3 HOH C 5 405 408 HOH HOH . 
K 3 HOH C 6 406 404 HOH HOH . 
K 3 HOH C 7 407 406 HOH HOH . 
K 3 HOH C 8 408 409 HOH HOH . 
K 3 HOH C 9 409 405 HOH HOH . 
K 3 HOH C 10 410 407 HOH HOH . 
K 3 HOH C 11 411 410 HOH HOH . 
K 3 HOH C 12 412 411 HOH HOH . 
L 3 HOH D 1 401 401 HOH HOH . 
L 3 HOH D 2 402 402 HOH HOH . 
L 3 HOH D 3 403 405 HOH HOH . 
L 3 HOH D 4 404 406 HOH HOH . 
L 3 HOH D 5 405 417 HOH HOH . 
L 3 HOH D 6 406 411 HOH HOH . 
L 3 HOH D 7 407 409 HOH HOH . 
L 3 HOH D 8 408 404 HOH HOH . 
L 3 HOH D 9 409 403 HOH HOH . 
L 3 HOH D 10 410 415 HOH HOH . 
L 3 HOH D 11 411 408 HOH HOH . 
L 3 HOH D 12 412 410 HOH HOH . 
L 3 HOH D 13 413 407 HOH HOH . 
L 3 HOH D 14 414 418 HOH HOH . 
L 3 HOH D 15 415 422 HOH HOH . 
L 3 HOH D 16 416 413 HOH HOH . 
L 3 HOH D 17 417 416 HOH HOH . 
L 3 HOH D 18 418 414 HOH HOH . 
L 3 HOH D 19 419 420 HOH HOH . 
L 3 HOH D 20 420 419 HOH HOH . 
L 3 HOH D 21 421 421 HOH HOH . 
L 3 HOH D 22 422 423 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . H 2 35.611 22.515 -60.639 1 35.17 ? PA NAP 301 D 1 
HETATM 2 O O1A NAP . . . H 2 36.957 22.471 -61.282 1 33.67 ? O1A NAP 301 D 1 
HETATM 3 O O2A NAP . . . H 2 35.345 23.594 -59.65 1 32.39 ? O2A NAP 301 D 1 
HETATM 4 O O5B NAP . . . H 2 34.505 22.602 -61.778 1 32.43 ? O5B NAP 301 D 1 
HETATM 5 C C5B NAP . . . H 2 33.17 23.074 -61.49 1 33.79 ? C5B NAP 301 D 1 
HETATM 6 C C4B NAP . . . H 2 32.569 23.469 -62.815 1 34.88 ? C4B NAP 301 D 1 
HETATM 7 O O4B NAP . . . H 2 31.285 24.11 -62.606 1 34.58 ? O4B NAP 301 D 1 
HETATM 8 C C3B NAP . . . H 2 33.407 24.472 -63.621 1 35.88 ? C3B NAP 301 D 1 
HETATM 9 O O3B NAP . . . H 2 33.418 24.124 -64.998 1 35.52 ? O3B NAP 301 D 1 
HETATM 10 C C2B NAP . . . H 2 32.676 25.785 -63.365 1 31.39 ? C2B NAP 301 D 1 
HETATM 11 O O2B NAP . . . H 2 33.043 26.722 -64.385 1 30.36 ? O2B NAP 301 D 1 
HETATM 12 C C1B NAP . . . H 2 31.239 25.28 -63.389 1 29.03 ? C1B NAP 301 D 1 
HETATM 13 N N9A NAP . . . H 2 30.302 26.185 -62.745 1 28.76 ? N9A NAP 301 D 1 
HETATM 14 C C8A NAP . . . H 2 30.339 26.588 -61.434 1 30.49 ? C8A NAP 301 D 1 
HETATM 15 N N7A NAP . . . H 2 29.365 27.401 -61.115 1 31.78 ? N7A NAP 301 D 1 
HETATM 16 C C5A NAP . . . H 2 28.636 27.535 -62.283 1 33.08 ? C5A NAP 301 D 1 
HETATM 17 C C6A NAP . . . H 2 27.482 28.273 -62.585 1 31.86 ? C6A NAP 301 D 1 
HETATM 18 N N6A NAP . . . H 2 26.849 29.041 -61.701 1 34.42 ? N6A NAP 301 D 1 
HETATM 19 N N1A NAP . . . H 2 27.006 28.186 -63.849 1 33.18 ? N1A NAP 301 D 1 
HETATM 20 C C2A NAP . . . H 2 27.655 27.416 -64.73 1 34.45 ? C2A NAP 301 D 1 
HETATM 21 N N3A NAP . . . H 2 28.752 26.686 -64.558 1 35.89 ? N3A NAP 301 D 1 
HETATM 22 C C4A NAP . . . H 2 29.2 26.788 -63.298 1 28.31 ? C4A NAP 301 D 1 
HETATM 23 O O3 NAP . . . H 2 35.296 21.075 -59.982 1 27.67 ? O3 NAP 301 D 1 
HETATM 24 P PN NAP . . . H 2 34.855 19.579 -60.404 1 26.59 ? PN NAP 301 D 1 
HETATM 25 O O1N NAP . . . H 2 35.388 18.618 -59.397 1 26.85 ? O1N NAP 301 D 1 
HETATM 26 O O2N NAP . . . H 2 35.136 19.284 -61.837 1 26.85 ? O2N NAP 301 D 1 
HETATM 27 O O5D NAP . . . H 2 33.276 19.684 -60.218 1 27.3 ? O5D NAP 301 D 1 
HETATM 28 C C5D NAP . . . H 2 32.448 18.98 -61.161 1 25.74 ? C5D NAP 301 D 1 
HETATM 29 C C4D NAP . . . H 2 31.431 18.16 -60.408 1 26 ? C4D NAP 301 D 1 
HETATM 30 O O4D NAP . . . H 2 32.136 17.197 -59.611 1 25.62 ? O4D NAP 301 D 1 
HETATM 31 C C3D NAP . . . H 2 30.519 18.886 -59.406 1 24.65 ? C3D NAP 301 D 1 
HETATM 32 O O3D NAP . . . H 2 29.187 18.422 -59.582 1 24.11 ? O3D NAP 301 D 1 
HETATM 33 C C2D NAP . . . H 2 31.031 18.355 -58.061 1 25.68 ? C2D NAP 301 D 1 
HETATM 34 O O2D NAP . . . H 2 30.073 18.404 -57.012 1 25.4 ? O2D NAP 301 D 1 
HETATM 35 C C1D NAP . . . H 2 31.355 16.929 -58.477 1 26.8 ? C1D NAP 301 D 1 
HETATM 36 N N1N NAP . . . H 2 32.213 16.208 -57.507 1 24.58 ? N1N NAP 301 D 1 
HETATM 37 C C2N NAP . . . H 2 33.503 16.622 -57.304 1 23.86 ? C2N NAP 301 D 1 
HETATM 38 C C3N NAP . . . H 2 34.329 15.905 -56.462 1 23.73 ? C3N NAP 301 D 1 
HETATM 39 C C7N NAP . . . H 2 35.773 16.285 -56.285 1 24.24 ? C7N NAP 301 D 1 
HETATM 40 O O7N NAP . . . H 2 36.438 15.676 -55.453 1 24.12 ? O7N NAP 301 D 1 
HETATM 41 N N7N NAP . . . H 2 36.266 17.261 -57.034 1 24.51 ? N7N NAP 301 D 1 
HETATM 42 C C4N NAP . . . H 2 33.806 14.835 -55.761 1 23.5 ? C4N NAP 301 D 1 
HETATM 43 C C5N NAP . . . H 2 32.523 14.412 -56.009 1 24.93 ? C5N NAP 301 D 1 
HETATM 44 C C6N NAP . . . H 2 31.741 15.112 -56.892 1 23.15 ? C6N NAP 301 D 1 
HETATM 45 P P2B NAP . . . H 2 32.857 28.31 -64.156 1 23.07 ? P2B NAP 301 D 1 
HETATM 46 O O1X NAP . . . H 2 31.42 28.677 -64.487 1 23.59 ? O1X NAP 301 D 1 
HETATM 47 O O2X NAP . . . H 2 33.225 28.668 -62.74 1 22.35 ? O2X NAP 301 D 1 
HETATM 48 O O3X NAP . . . H 2 33.813 28.88 -65.153 1 22.78 ? O3X NAP 301 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#