data_7E2X # _model_server_result.job_id DAYODD-A3ipfnEioOxsjxA _model_server_result.datetime_utc '2024-12-26 17:41:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7E2X # _exptl.entry_id 7E2X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 854.895 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 126 B CYS 121 1_555 B SG CYS 154 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 230 R CYS 109 1_555 D SG CYS 308 R CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C39 H68 O16 P2' _chem_comp.formula_weight 854.895 _chem_comp.id J40 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P1 J40 doub 250 n n O3 C3 J40 sing 251 n n C3 C2 J40 sing 252 n n C3 C4 J40 sing 253 n n C2 C1 J40 sing 254 n n C2 O2 J40 sing 255 n n C1 O1 J40 sing 256 n n C1 C6 J40 sing 257 n n O1 P1 J40 sing 258 n n P1 O13 J40 sing 259 n n P1 O11 J40 sing 260 n n C7 O13 J40 sing 261 n n C7 C8 J40 sing 262 n n O4 C4 J40 sing 263 n n O4 P4 J40 sing 264 n n C4 C5 J40 sing 265 n n C5 C6 J40 sing 266 n n C5 O5 J40 sing 267 n n C26 C25 J40 sing 268 n n C6 O6 J40 sing 269 n n C25 C24 J40 doub 270 z n O17 C10 J40 doub 271 n n O42 P4 J40 doub 272 n n P4 O41 J40 sing 273 n n P4 O43 J40 sing 274 n n C8 C9 J40 sing 275 n n C8 O16 J40 sing 276 n n C9 O18 J40 sing 277 n n C10 O16 J40 sing 278 n n C10 C12 J40 sing 279 n n C23 C24 J40 sing 280 n n C23 C22 J40 sing 281 n n C17 C16 J40 sing 282 n n C17 C18 J40 sing 283 n n C22 C21 J40 doub 284 z n C13 C12 J40 sing 285 n n C13 C14 J40 sing 286 n n O18 C11 J40 sing 287 n n C16 C15 J40 doub 288 e n C19 C18 J40 doub 289 e n C19 C20 J40 sing 290 n n C15 C14 J40 sing 291 n n C21 C20 J40 sing 292 n n C11 O19 J40 doub 293 n n C11 C31 J40 sing 294 n n C31 C32 J40 sing 295 n n C32 C33 J40 sing 296 n n C33 C34 J40 sing 297 n n C34 C35 J40 sing 298 n n C35 C36 J40 sing 299 n n C36 C37 J40 sing 300 n n C37 C38 J40 sing 301 n n C38 C39 J40 sing 302 n n C39 C40 J40 sing 303 n n C40 C41 J40 sing 304 n n C42 C41 J40 sing 305 n n C42 C43 J40 sing 306 n n O11 H1 J40 sing 307 n n O6 H2 J40 sing 308 n n C1 H3 J40 sing 309 n n C6 H4 J40 sing 310 n n C2 H5 J40 sing 311 n n O2 H6 J40 sing 312 n n C3 H7 J40 sing 313 n n O3 H8 J40 sing 314 n n C4 H9 J40 sing 315 n n O41 H10 J40 sing 316 n n O43 H11 J40 sing 317 n n C5 H12 J40 sing 318 n n O5 H13 J40 sing 319 n n C7 H14 J40 sing 320 n n C7 H15 J40 sing 321 n n C8 H16 J40 sing 322 n n C9 H17 J40 sing 323 n n C9 H18 J40 sing 324 n n C12 H19 J40 sing 325 n n C12 H20 J40 sing 326 n n C13 H21 J40 sing 327 n n C13 H22 J40 sing 328 n n C14 H23 J40 sing 329 n n C14 H24 J40 sing 330 n n C15 H25 J40 sing 331 n n C16 H27 J40 sing 332 n n C17 H29 J40 sing 333 n n C17 H30 J40 sing 334 n n C18 H31 J40 sing 335 n n C19 H33 J40 sing 336 n n C20 H35 J40 sing 337 n n C20 H36 J40 sing 338 n n C21 H37 J40 sing 339 n n C22 H39 J40 sing 340 n n C23 H41 J40 sing 341 n n C23 H42 J40 sing 342 n n C24 H43 J40 sing 343 n n C31 H45 J40 sing 344 n n C31 H46 J40 sing 345 n n C32 H47 J40 sing 346 n n C32 H48 J40 sing 347 n n C33 H49 J40 sing 348 n n C33 H50 J40 sing 349 n n C34 H51 J40 sing 350 n n C34 H52 J40 sing 351 n n C35 H53 J40 sing 352 n n C35 H54 J40 sing 353 n n C36 H55 J40 sing 354 n n C36 H56 J40 sing 355 n n C37 H57 J40 sing 356 n n C37 H58 J40 sing 357 n n C38 H59 J40 sing 358 n n C38 H60 J40 sing 359 n n C39 H61 J40 sing 360 n n C39 H62 J40 sing 361 n n C40 H63 J40 sing 362 n n C40 H64 J40 sing 363 n n C25 H65 J40 sing 364 n n C26 H67 J40 sing 365 n n C26 H68 J40 sing 366 n n C26 H69 J40 sing 367 n n C41 H70 J40 sing 368 n n C41 H71 J40 sing 369 n n C42 H72 J40 sing 370 n n C42 H73 J40 sing 371 n n C43 H74 J40 sing 372 n n C43 H75 J40 sing 373 n n C43 H76 J40 sing 374 n n # _atom_sites.entry_id 7E2X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 J40 R 1 601 601 J40 PT5 . F 6 CLR R 1 602 604 CLR CLR . G 6 CLR R 1 603 605 CLR CLR . H 6 CLR R 1 604 606 CLR CLR . I 6 CLR R 1 605 607 CLR CLR . J 7 PLM R 1 606 608 PLM PLM . K 6 CLR R 1 607 609 CLR CLR . L 6 CLR R 1 608 610 CLR CLR . M 6 CLR R 1 609 611 CLR CLR . N 6 CLR R 1 610 612 CLR CLR . O 6 CLR R 1 611 613 CLR CLR . P 6 CLR R 1 612 614 CLR CLR . Q 7 PLM R 1 613 615 PLM PLM . R 7 PLM R 1 614 616 PLM PLM . S 8 HOH R 1 701 1 HOH HOH . S 8 HOH R 2 702 5 HOH HOH . S 8 HOH R 3 703 6 HOH HOH . S 8 HOH R 4 704 8 HOH HOH . S 8 HOH R 5 705 4 HOH HOH . S 8 HOH R 6 706 3 HOH HOH . S 8 HOH R 7 707 9 HOH HOH . S 8 HOH R 8 708 2 HOH HOH . S 8 HOH R 9 709 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 J40 . . . E 5 83.663 105.364 84.721 1 155.81 ? O12 J40 601 R 1 HETATM 2 P P1 J40 . . . E 5 83.826 104.634 85.974 1 155.81 ? P1 J40 601 R 1 HETATM 3 O O13 J40 . . . E 5 82.47 103.779 86.36 1 155.81 ? O13 J40 601 R 1 HETATM 4 O O11 J40 . . . E 5 84.053 105.728 86.916 1 155.81 -1 O11 J40 601 R 1 HETATM 5 O O6 J40 . . . E 5 86.199 106.213 86.653 1 155.81 ? O6 J40 601 R 1 HETATM 6 O O1 J40 . . . E 5 85.127 103.622 85.917 1 155.81 ? O1 J40 601 R 1 HETATM 7 C C1 J40 . . . E 5 86.377 104.113 85.524 1 155.81 ? C1 J40 601 R 1 HETATM 8 C C6 J40 . . . E 5 86.93 105.019 86.63 1 155.81 ? C6 J40 601 R 1 HETATM 9 C C2 J40 . . . E 5 87.278 102.902 85.269 1 155.81 ? C2 J40 601 R 1 HETATM 10 O O2 J40 . . . E 5 87.226 102.051 86.379 1 155.81 ? O2 J40 601 R 1 HETATM 11 C C3 J40 . . . E 5 88.722 103.333 85.037 1 155.81 ? C3 J40 601 R 1 HETATM 12 O O3 J40 . . . E 5 89.52 102.203 84.824 1 155.81 ? O3 J40 601 R 1 HETATM 13 C C4 J40 . . . E 5 89.215 104.084 86.266 1 155.81 ? C4 J40 601 R 1 HETATM 14 O O4 J40 . . . E 5 90.571 104.397 86.12 1 155.81 ? O4 J40 601 R 1 HETATM 15 P P4 J40 . . . E 5 91.574 104.194 87.412 1 155.81 ? P4 J40 601 R 1 HETATM 16 O O41 J40 . . . E 5 92.423 105.348 87.696 1 155.81 ? O41 J40 601 R 1 HETATM 17 O O42 J40 . . . E 5 92.508 103.081 87.276 1 155.81 -1 O42 J40 601 R 1 HETATM 18 O O43 J40 . . . E 5 90.885 103.936 88.674 1 155.81 ? O43 J40 601 R 1 HETATM 19 C C5 J40 . . . E 5 88.399 105.364 86.398 1 155.81 ? C5 J40 601 R 1 HETATM 20 O O5 J40 . . . E 5 88.877 106.107 87.484 1 155.81 ? O5 J40 601 R 1 HETATM 21 C C7 J40 . . . E 5 81.216 104.347 86.109 1 155.81 ? C7 J40 601 R 1 HETATM 22 C C8 J40 . . . E 5 80.507 104.617 87.437 1 155.81 ? C8 J40 601 R 1 HETATM 23 C C9 J40 . . . E 5 80.046 103.287 88.033 1 155.81 ? C9 J40 601 R 1 HETATM 24 O O16 J40 . . . E 5 81.385 105.254 88.324 1 155.81 ? O16 J40 601 R 1 HETATM 25 C C10 J40 . . . E 5 81.539 106.63 88.11 1 155.81 ? C10 J40 601 R 1 HETATM 26 O O17 J40 . . . E 5 81.74 107.047 87.02 1 155.81 ? O17 J40 601 R 1 HETATM 27 O O18 J40 . . . E 5 80.767 103 89.198 1 155.81 ? O18 J40 601 R 1 HETATM 28 C C11 J40 . . . E 5 80.043 103.148 90.386 1 155.81 ? C11 J40 601 R 1 HETATM 29 O O19 J40 . . . E 5 79.286 104.051 90.519 1 155.81 ? O19 J40 601 R 1 HETATM 30 C C12 J40 . . . E 5 81.456 107.611 89.278 1 155.81 ? C12 J40 601 R 1 HETATM 31 C C13 J40 . . . E 5 82.333 108.822 88.964 1 155.81 ? C13 J40 601 R 1 HETATM 32 C C14 J40 . . . E 5 82.307 109.804 90.134 1 155.81 ? C14 J40 601 R 1 HETATM 33 C C15 J40 . . . E 5 82.147 111.227 89.604 1 155.81 ? C15 J40 601 R 1 HETATM 34 C C16 J40 . . . E 5 80.711 111.557 89.204 1 155.81 ? C16 J40 601 R 1 HETATM 35 C C17 J40 . . . E 5 80.535 112.998 88.728 1 155.81 ? C17 J40 601 R 1 HETATM 36 C C18 J40 . . . E 5 80.342 113.916 89.933 1 155.81 ? C18 J40 601 R 1 HETATM 37 C C19 J40 . . . E 5 80.356 115.395 89.556 1 155.81 ? C19 J40 601 R 1 HETATM 38 C C20 J40 . . . E 5 79.658 116.271 90.595 1 155.81 ? C20 J40 601 R 1 HETATM 39 C C21 J40 . . . E 5 80.009 117.742 90.371 1 155.81 ? C21 J40 601 R 1 HETATM 40 C C22 J40 . . . E 5 80.111 118.146 88.901 1 155.81 ? C22 J40 601 R 1 HETATM 41 C C23 J40 . . . E 5 78.788 118.042 88.143 1 155.81 ? C23 J40 601 R 1 HETATM 42 C C24 J40 . . . E 5 78.066 119.386 88.187 1 155.81 ? C24 J40 601 R 1 HETATM 43 C C31 J40 . . . E 5 80.229 102.136 91.516 1 155.81 ? C31 J40 601 R 1 HETATM 44 C C32 J40 . . . E 5 81.358 102.601 92.433 1 155.81 ? C32 J40 601 R 1 HETATM 45 C C33 J40 . . . E 5 81.283 101.85 93.762 1 155.81 ? C33 J40 601 R 1 HETATM 46 C C34 J40 . . . E 5 82.691 101.698 94.335 1 155.81 ? C34 J40 601 R 1 HETATM 47 C C35 J40 . . . E 5 82.628 101.006 95.695 1 155.81 ? C35 J40 601 R 1 HETATM 48 C C36 J40 . . . E 5 82.354 102.039 96.788 1 155.81 ? C36 J40 601 R 1 HETATM 49 C C37 J40 . . . E 5 81.968 101.328 98.084 1 155.81 ? C37 J40 601 R 1 HETATM 50 C C38 J40 . . . E 5 83.193 100.642 98.686 1 155.81 ? C38 J40 601 R 1 HETATM 51 C C39 J40 . . . E 5 83.412 101.15 100.11 1 155.81 ? C39 J40 601 R 1 HETATM 52 C C40 J40 . . . E 5 84.74 100.618 100.647 1 155.81 ? C40 J40 601 R 1 HETATM 53 C C25 J40 . . . E 5 78.195 120.177 86.886 1 155.81 ? C25 J40 601 R 1 HETATM 54 C C26 J40 . . . E 5 79.639 120.53 86.541 1 155.81 ? C26 J40 601 R 1 HETATM 55 C C41 J40 . . . E 5 84.482 99.582 101.739 1 155.81 ? C41 J40 601 R 1 HETATM 56 C C42 J40 . . . E 5 83.808 98.35 101.139 1 155.81 ? C42 J40 601 R 1 HETATM 57 C C43 J40 . . . E 5 84.033 97.153 102.061 1 155.81 ? C43 J40 601 R 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 57 #