data_7E2Y # _model_server_result.job_id WNOh0gizxWW_0VL3qY1qtg _model_server_result.datetime_utc '2025-02-05 07:42:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7E2Y # _exptl.entry_id 7E2Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 176.215 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SEROTONIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 126 B CYS 121 1_555 B SG CYS 154 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 230 R CYS 109 1_555 D SG CYS 308 R CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C10 H12 N2 O' _chem_comp.formula_weight 176.215 _chem_comp.id SRO _chem_comp.mon_nstd_flag . _chem_comp.name SEROTONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-(2-AMINOETHYL)-1H-INDOL-5-OL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH CZ3 SRO sing 490 n n OH HOH SRO sing 491 n n CZ3 CE3 SRO doub 492 n y CZ3 CH2 SRO sing 493 n y CH2 CZ2 SRO doub 494 n y CH2 HH2 SRO sing 495 n n CZ2 CE2 SRO sing 496 n y CZ2 HZ2 SRO sing 497 n n CE2 NE1 SRO sing 498 n y CE2 CD2 SRO doub 499 n y NE1 CD1 SRO sing 500 n y NE1 HNE1 SRO sing 501 n n CD1 CG SRO doub 502 n y CD1 HD1 SRO sing 503 n n CG CB SRO sing 504 n n CG CD2 SRO sing 505 n y CD2 CE3 SRO sing 506 n y CE3 HE3 SRO sing 507 n n CB CA SRO sing 508 n n CB HB1 SRO sing 509 n n CB HB2 SRO sing 510 n n CA NZ SRO sing 511 n n CA HA1 SRO sing 512 n n CA HA2 SRO sing 513 n n NZ HNZ1 SRO sing 514 n n NZ HNZ2 SRO sing 515 n n # _atom_sites.entry_id 7E2Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SRO R 1 501 501 SRO SRO . F 6 J40 R 1 502 601 J40 PT5 . G 7 CLR R 1 503 604 CLR CLR . H 7 CLR R 1 504 605 CLR CLR . I 7 CLR R 1 505 606 CLR CLR . J 7 CLR R 1 506 607 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH SRO . . . E 5 104.135 118.047 110.152 1 42.94 ? OH SRO 501 R 1 HETATM 2 C CZ3 SRO . . . E 5 104.171 117.01 109.211 1 42.94 ? CZ3 SRO 501 R 1 HETATM 3 C CH2 SRO . . . E 5 105.105 117.086 108.124 1 42.94 ? CH2 SRO 501 R 1 HETATM 4 C CZ2 SRO . . . E 5 105.06 115.91 107.161 1 42.94 ? CZ2 SRO 501 R 1 HETATM 5 C CE2 SRO . . . E 5 104.185 114.898 107.368 1 42.94 ? CE2 SRO 501 R 1 HETATM 6 N NE1 SRO . . . E 5 103.917 113.736 106.694 1 42.94 ? NE1 SRO 501 R 1 HETATM 7 C CD1 SRO . . . E 5 102.984 112.926 107.146 1 42.94 ? CD1 SRO 501 R 1 HETATM 8 C CG SRO . . . E 5 102.54 113.587 108.263 1 42.94 ? CG SRO 501 R 1 HETATM 9 C CD2 SRO . . . E 5 103.283 114.883 108.469 1 42.94 ? CD2 SRO 501 R 1 HETATM 10 C CE3 SRO . . . E 5 103.286 115.917 109.358 1 42.94 ? CE3 SRO 501 R 1 HETATM 11 C CB SRO . . . E 5 101.436 113.077 109.187 1 42.94 ? CB SRO 501 R 1 HETATM 12 C CA SRO . . . E 5 100.117 112.98 108.423 1 42.94 ? CA SRO 501 R 1 HETATM 13 N NZ SRO . . . E 5 99.177 112.175 109.181 1 42.94 ? NZ SRO 501 R 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #