data_7E2Y # _model_server_result.job_id xalZMQOCxn1beYl5xdNFDw _model_server_result.datetime_utc '2025-02-05 07:37:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 7E2Y # _exptl.entry_id 7E2Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 854.895 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 126 B CYS 121 1_555 B SG CYS 154 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 230 R CYS 109 1_555 D SG CYS 308 R CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C39 H68 O16 P2' _chem_comp.formula_weight 854.895 _chem_comp.id J40 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P1 J40 doub 248 n n O3 C3 J40 sing 249 n n C3 C2 J40 sing 250 n n C3 C4 J40 sing 251 n n C2 C1 J40 sing 252 n n C2 O2 J40 sing 253 n n C1 O1 J40 sing 254 n n C1 C6 J40 sing 255 n n O1 P1 J40 sing 256 n n P1 O13 J40 sing 257 n n P1 O11 J40 sing 258 n n C7 O13 J40 sing 259 n n C7 C8 J40 sing 260 n n O4 C4 J40 sing 261 n n O4 P4 J40 sing 262 n n C4 C5 J40 sing 263 n n C5 C6 J40 sing 264 n n C5 O5 J40 sing 265 n n C26 C25 J40 sing 266 n n C6 O6 J40 sing 267 n n C25 C24 J40 doub 268 z n O17 C10 J40 doub 269 n n O42 P4 J40 doub 270 n n P4 O41 J40 sing 271 n n P4 O43 J40 sing 272 n n C8 C9 J40 sing 273 n n C8 O16 J40 sing 274 n n C9 O18 J40 sing 275 n n C10 O16 J40 sing 276 n n C10 C12 J40 sing 277 n n C23 C24 J40 sing 278 n n C23 C22 J40 sing 279 n n C17 C16 J40 sing 280 n n C17 C18 J40 sing 281 n n C22 C21 J40 doub 282 z n C13 C12 J40 sing 283 n n C13 C14 J40 sing 284 n n O18 C11 J40 sing 285 n n C16 C15 J40 doub 286 e n C19 C18 J40 doub 287 e n C19 C20 J40 sing 288 n n C15 C14 J40 sing 289 n n C21 C20 J40 sing 290 n n C11 O19 J40 doub 291 n n C11 C31 J40 sing 292 n n C31 C32 J40 sing 293 n n C32 C33 J40 sing 294 n n C33 C34 J40 sing 295 n n C34 C35 J40 sing 296 n n C35 C36 J40 sing 297 n n C36 C37 J40 sing 298 n n C37 C38 J40 sing 299 n n C38 C39 J40 sing 300 n n C39 C40 J40 sing 301 n n C40 C41 J40 sing 302 n n C42 C41 J40 sing 303 n n C42 C43 J40 sing 304 n n O11 H1 J40 sing 305 n n O6 H2 J40 sing 306 n n C1 H3 J40 sing 307 n n C6 H4 J40 sing 308 n n C2 H5 J40 sing 309 n n O2 H6 J40 sing 310 n n C3 H7 J40 sing 311 n n O3 H8 J40 sing 312 n n C4 H9 J40 sing 313 n n O41 H10 J40 sing 314 n n O43 H11 J40 sing 315 n n C5 H12 J40 sing 316 n n O5 H13 J40 sing 317 n n C7 H14 J40 sing 318 n n C7 H15 J40 sing 319 n n C8 H16 J40 sing 320 n n C9 H17 J40 sing 321 n n C9 H18 J40 sing 322 n n C12 H19 J40 sing 323 n n C12 H20 J40 sing 324 n n C13 H21 J40 sing 325 n n C13 H22 J40 sing 326 n n C14 H23 J40 sing 327 n n C14 H24 J40 sing 328 n n C15 H25 J40 sing 329 n n C16 H27 J40 sing 330 n n C17 H29 J40 sing 331 n n C17 H30 J40 sing 332 n n C18 H31 J40 sing 333 n n C19 H33 J40 sing 334 n n C20 H35 J40 sing 335 n n C20 H36 J40 sing 336 n n C21 H37 J40 sing 337 n n C22 H39 J40 sing 338 n n C23 H41 J40 sing 339 n n C23 H42 J40 sing 340 n n C24 H43 J40 sing 341 n n C31 H45 J40 sing 342 n n C31 H46 J40 sing 343 n n C32 H47 J40 sing 344 n n C32 H48 J40 sing 345 n n C33 H49 J40 sing 346 n n C33 H50 J40 sing 347 n n C34 H51 J40 sing 348 n n C34 H52 J40 sing 349 n n C35 H53 J40 sing 350 n n C35 H54 J40 sing 351 n n C36 H55 J40 sing 352 n n C36 H56 J40 sing 353 n n C37 H57 J40 sing 354 n n C37 H58 J40 sing 355 n n C38 H59 J40 sing 356 n n C38 H60 J40 sing 357 n n C39 H61 J40 sing 358 n n C39 H62 J40 sing 359 n n C40 H63 J40 sing 360 n n C40 H64 J40 sing 361 n n C25 H65 J40 sing 362 n n C26 H67 J40 sing 363 n n C26 H68 J40 sing 364 n n C26 H69 J40 sing 365 n n C41 H70 J40 sing 366 n n C41 H71 J40 sing 367 n n C42 H72 J40 sing 368 n n C42 H73 J40 sing 369 n n C43 H74 J40 sing 370 n n C43 H75 J40 sing 371 n n C43 H76 J40 sing 372 n n # _atom_sites.entry_id 7E2Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SRO R 1 501 501 SRO SRO . F 6 J40 R 1 502 601 J40 PT5 . G 7 CLR R 1 503 604 CLR CLR . H 7 CLR R 1 504 605 CLR CLR . I 7 CLR R 1 505 606 CLR CLR . J 7 CLR R 1 506 607 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 J40 . . . F 6 84.362 107.175 86.251 1 56.12 ? O12 J40 502 R 1 HETATM 2 P P1 J40 . . . F 6 85.587 106.515 86.695 1 56.12 ? P1 J40 502 R 1 HETATM 3 O O13 J40 . . . F 6 85.25 105.26 87.712 1 56.12 ? O13 J40 502 R 1 HETATM 4 O O11 J40 . . . F 6 86.256 107.605 87.401 1 56.12 -1 O11 J40 502 R 1 HETATM 5 O O6 J40 . . . F 6 88.336 107.217 87.146 1 56.12 ? O6 J40 502 R 1 HETATM 6 O O1 J40 . . . F 6 86.485 105.996 85.411 1 56.12 ? O1 J40 502 R 1 HETATM 7 C C1 J40 . . . F 6 87.767 105.472 85.626 1 56.12 ? C1 J40 502 R 1 HETATM 8 C C6 J40 . . . F 6 88.274 105.824 87.021 1 56.12 ? C6 J40 502 R 1 HETATM 9 C C2 J40 . . . F 6 87.738 103.957 85.474 1 56.12 ? C2 J40 502 R 1 HETATM 10 O O2 J40 . . . F 6 87.04 103.385 86.542 1 56.12 ? O2 J40 502 R 1 HETATM 11 C C3 J40 . . . F 6 89.184 103.488 85.488 1 56.12 ? C3 J40 502 R 1 HETATM 12 O O3 J40 . . . F 6 89.237 102.116 85.217 1 56.12 ? O3 J40 502 R 1 HETATM 13 C C4 J40 . . . F 6 89.783 103.764 86.864 1 56.12 ? C4 J40 502 R 1 HETATM 14 O O4 J40 . . . F 6 91.123 103.36 86.835 1 56.12 ? O4 J40 502 R 1 HETATM 15 P P4 J40 . . . F 6 92.31 104.33 87.438 1 56.12 ? P4 J40 502 R 1 HETATM 16 O O41 J40 . . . F 6 92.755 105.378 86.522 1 56.12 ? O41 J40 502 R 1 HETATM 17 O O42 J40 . . . F 6 93.525 103.599 87.776 1 56.12 -1 O42 J40 502 R 1 HETATM 18 O O43 J40 . . . F 6 91.972 105.036 88.669 1 56.12 ? O43 J40 502 R 1 HETATM 19 C C5 J40 . . . F 6 89.672 105.245 87.253 1 56.12 ? C5 J40 502 R 1 HETATM 20 O O5 J40 . . . F 6 89.95 105.37 88.619 1 56.12 ? O5 J40 502 R 1 HETATM 21 C C7 J40 . . . F 6 84.182 104.41 87.401 1 56.12 ? C7 J40 502 R 1 HETATM 22 C C8 J40 . . . F 6 82.856 105.09 87.739 1 56.12 ? C8 J40 502 R 1 HETATM 23 C C9 J40 . . . F 6 81.762 104.031 87.874 1 56.12 ? C9 J40 502 R 1 HETATM 24 O O16 J40 . . . F 6 82.978 105.797 88.942 1 56.12 ? O16 J40 502 R 1 HETATM 25 C C10 J40 . . . F 6 82.424 107.082 88.915 1 56.12 ? C10 J40 502 R 1 HETATM 26 O O17 J40 . . . F 6 81.539 107.338 88.167 1 56.12 ? O17 J40 502 R 1 HETATM 27 O O18 J40 . . . F 6 81.826 103.431 89.137 1 56.12 ? O18 J40 502 R 1 HETATM 28 C C11 J40 . . . F 6 80.71 103.685 89.942 1 56.12 ? C11 J40 502 R 1 HETATM 29 O O19 J40 . . . F 6 80.221 104.764 89.952 1 56.12 ? O19 J40 502 R 1 HETATM 30 C C12 J40 . . . F 6 82.962 108.16 89.853 1 56.12 ? C12 J40 502 R 1 HETATM 31 C C13 J40 . . . F 6 81.827 108.68 90.732 1 56.12 ? C13 J40 502 R 1 HETATM 32 C C14 J40 . . . F 6 82.325 109.862 91.56 1 56.12 ? C14 J40 502 R 1 HETATM 33 C C15 J40 . . . F 6 81.774 111.161 90.975 1 56.12 ? C15 J40 502 R 1 HETATM 34 C C16 J40 . . . F 6 82.133 111.349 89.503 1 56.12 ? C16 J40 502 R 1 HETATM 35 C C17 J40 . . . F 6 82.179 112.817 89.087 1 56.12 ? C17 J40 502 R 1 HETATM 36 C C18 J40 . . . F 6 80.812 113.242 88.556 1 56.12 ? C18 J40 502 R 1 HETATM 37 C C19 J40 . . . F 6 80.908 114.32 87.478 1 56.12 ? C19 J40 502 R 1 HETATM 38 C C20 J40 . . . F 6 79.602 115.085 87.276 1 56.12 ? C20 J40 502 R 1 HETATM 39 C C21 J40 . . . F 6 79.125 115.652 88.611 1 56.12 ? C21 J40 502 R 1 HETATM 40 C C22 J40 . . . F 6 80.27 116.105 89.514 1 56.12 ? C22 J40 502 R 1 HETATM 41 C C23 J40 . . . F 6 80.882 117.436 89.082 1 56.12 ? C23 J40 502 R 1 HETATM 42 C C24 J40 . . . F 6 79.928 118.154 88.13 1 56.12 ? C24 J40 502 R 1 HETATM 43 C C31 J40 . . . F 6 80.123 102.572 90.809 1 56.12 ? C31 J40 502 R 1 HETATM 44 C C32 J40 . . . F 6 80.599 102.743 92.25 1 56.12 ? C32 J40 502 R 1 HETATM 45 C C33 J40 . . . F 6 81.517 101.581 92.628 1 56.12 ? C33 J40 502 R 1 HETATM 46 C C34 J40 . . . F 6 82.116 101.842 94.008 1 56.12 ? C34 J40 502 R 1 HETATM 47 C C35 J40 . . . F 6 82.865 100.6 94.486 1 56.12 ? C35 J40 502 R 1 HETATM 48 C C36 J40 . . . F 6 81.987 99.824 95.466 1 56.12 ? C36 J40 502 R 1 HETATM 49 C C37 J40 . . . F 6 82.582 99.919 96.869 1 56.12 ? C37 J40 502 R 1 HETATM 50 C C38 J40 . . . F 6 82.48 101.358 97.369 1 56.12 ? C38 J40 502 R 1 HETATM 51 C C39 J40 . . . F 6 82.6 101.377 98.892 1 56.12 ? C39 J40 502 R 1 HETATM 52 C C40 J40 . . . F 6 84.055 101.143 99.29 1 56.12 ? C40 J40 502 R 1 HETATM 53 C C25 J40 . . . F 6 78.847 118.949 88.858 1 56.12 ? C25 J40 502 R 1 HETATM 54 C C26 J40 . . . F 6 79.405 120.135 89.641 1 56.12 ? C26 J40 502 R 1 HETATM 55 C C41 J40 . . . F 6 84.197 101.276 100.804 1 56.12 ? C41 J40 502 R 1 HETATM 56 C C42 J40 . . . F 6 83.862 99.941 101.466 1 56.12 ? C42 J40 502 R 1 HETATM 57 C C43 J40 . . . F 6 85.01 98.96 101.241 1 56.12 ? C43 J40 502 R 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 57 #