data_7E2Z # _model_server_result.job_id w0M3TuwMUskn6VlV--rqQQ _model_server_result.datetime_utc '2024-12-22 02:31:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":505}' # _entry.id 7E2Z # _exptl.entry_id 7E2Z _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 854.895 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 126 B CYS 121 1_555 B SG CYS 154 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 D SG CYS 230 R CYS 109 1_555 D SG CYS 308 R CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C39 H68 O16 P2' _chem_comp.formula_weight 854.895 _chem_comp.id J40 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P1 J40 doub 308 n n O3 C3 J40 sing 309 n n C3 C2 J40 sing 310 n n C3 C4 J40 sing 311 n n C2 C1 J40 sing 312 n n C2 O2 J40 sing 313 n n C1 O1 J40 sing 314 n n C1 C6 J40 sing 315 n n O1 P1 J40 sing 316 n n P1 O13 J40 sing 317 n n P1 O11 J40 sing 318 n n C7 O13 J40 sing 319 n n C7 C8 J40 sing 320 n n O4 C4 J40 sing 321 n n O4 P4 J40 sing 322 n n C4 C5 J40 sing 323 n n C5 C6 J40 sing 324 n n C5 O5 J40 sing 325 n n C26 C25 J40 sing 326 n n C6 O6 J40 sing 327 n n C25 C24 J40 doub 328 z n O17 C10 J40 doub 329 n n O42 P4 J40 doub 330 n n P4 O41 J40 sing 331 n n P4 O43 J40 sing 332 n n C8 C9 J40 sing 333 n n C8 O16 J40 sing 334 n n C9 O18 J40 sing 335 n n C10 O16 J40 sing 336 n n C10 C12 J40 sing 337 n n C23 C24 J40 sing 338 n n C23 C22 J40 sing 339 n n C17 C16 J40 sing 340 n n C17 C18 J40 sing 341 n n C22 C21 J40 doub 342 z n C13 C12 J40 sing 343 n n C13 C14 J40 sing 344 n n O18 C11 J40 sing 345 n n C16 C15 J40 doub 346 e n C19 C18 J40 doub 347 e n C19 C20 J40 sing 348 n n C15 C14 J40 sing 349 n n C21 C20 J40 sing 350 n n C11 O19 J40 doub 351 n n C11 C31 J40 sing 352 n n C31 C32 J40 sing 353 n n C32 C33 J40 sing 354 n n C33 C34 J40 sing 355 n n C34 C35 J40 sing 356 n n C35 C36 J40 sing 357 n n C36 C37 J40 sing 358 n n C37 C38 J40 sing 359 n n C38 C39 J40 sing 360 n n C39 C40 J40 sing 361 n n C40 C41 J40 sing 362 n n C42 C41 J40 sing 363 n n C42 C43 J40 sing 364 n n O11 H1 J40 sing 365 n n O6 H2 J40 sing 366 n n C1 H3 J40 sing 367 n n C6 H4 J40 sing 368 n n C2 H5 J40 sing 369 n n O2 H6 J40 sing 370 n n C3 H7 J40 sing 371 n n O3 H8 J40 sing 372 n n C4 H9 J40 sing 373 n n O41 H10 J40 sing 374 n n O43 H11 J40 sing 375 n n C5 H12 J40 sing 376 n n O5 H13 J40 sing 377 n n C7 H14 J40 sing 378 n n C7 H15 J40 sing 379 n n C8 H16 J40 sing 380 n n C9 H17 J40 sing 381 n n C9 H18 J40 sing 382 n n C12 H19 J40 sing 383 n n C12 H20 J40 sing 384 n n C13 H21 J40 sing 385 n n C13 H22 J40 sing 386 n n C14 H23 J40 sing 387 n n C14 H24 J40 sing 388 n n C15 H25 J40 sing 389 n n C16 H27 J40 sing 390 n n C17 H29 J40 sing 391 n n C17 H30 J40 sing 392 n n C18 H31 J40 sing 393 n n C19 H33 J40 sing 394 n n C20 H35 J40 sing 395 n n C20 H36 J40 sing 396 n n C21 H37 J40 sing 397 n n C22 H39 J40 sing 398 n n C23 H41 J40 sing 399 n n C23 H42 J40 sing 400 n n C24 H43 J40 sing 401 n n C31 H45 J40 sing 402 n n C31 H46 J40 sing 403 n n C32 H47 J40 sing 404 n n C32 H48 J40 sing 405 n n C33 H49 J40 sing 406 n n C33 H50 J40 sing 407 n n C34 H51 J40 sing 408 n n C34 H52 J40 sing 409 n n C35 H53 J40 sing 410 n n C35 H54 J40 sing 411 n n C36 H55 J40 sing 412 n n C36 H56 J40 sing 413 n n C37 H57 J40 sing 414 n n C37 H58 J40 sing 415 n n C38 H59 J40 sing 416 n n C38 H60 J40 sing 417 n n C39 H61 J40 sing 418 n n C39 H62 J40 sing 419 n n C40 H63 J40 sing 420 n n C40 H64 J40 sing 421 n n C25 H65 J40 sing 422 n n C26 H67 J40 sing 423 n n C26 H68 J40 sing 424 n n C26 H69 J40 sing 425 n n C41 H70 J40 sing 426 n n C41 H71 J40 sing 427 n n C42 H72 J40 sing 428 n n C42 H73 J40 sing 429 n n C43 H74 J40 sing 430 n n C43 H75 J40 sing 431 n n C43 H76 J40 sing 432 n n # _atom_sites.entry_id 7E2Z _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 9SC R 1 501 501 9SC ARI . F 6 CLR R 1 502 604 CLR CLR . G 6 CLR R 1 503 605 CLR CLR . H 6 CLR R 1 504 614 CLR CLR . I 7 J40 R 1 505 601 J40 PT5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 J40 . . . I 7 84.56 106.25 89.928 1 69.39 ? O12 J40 505 R 1 HETATM 2 P P1 J40 . . . I 7 84.919 106.031 91.326 1 69.39 ? P1 J40 505 R 1 HETATM 3 O O13 J40 . . . I 7 83.723 105.238 92.139 1 69.39 ? O13 J40 505 R 1 HETATM 4 O O11 J40 . . . I 7 85.067 107.404 91.804 1 69.39 ? O11 J40 505 R 1 HETATM 5 O O6 J40 . . . I 7 87.492 107.566 92.538 1 69.39 ? O6 J40 505 R 1 HETATM 6 O O1 J40 . . . I 7 86.332 105.194 91.462 1 69.39 ? O1 J40 505 R 1 HETATM 7 C C1 J40 . . . I 7 87.516 105.757 90.976 1 69.39 ? C1 J40 505 R 1 HETATM 8 C C6 J40 . . . I 7 88.23 106.445 92.14 1 69.39 ? C6 J40 505 R 1 HETATM 9 C C2 J40 . . . I 7 88.352 104.625 90.371 1 69.39 ? C2 J40 505 R 1 HETATM 10 O O2 J40 . . . I 7 88.342 103.528 91.242 1 69.39 ? O2 J40 505 R 1 HETATM 11 C C3 J40 . . . I 7 89.799 105.038 90.096 1 69.39 ? C3 J40 505 R 1 HETATM 12 O O3 J40 . . . I 7 90.53 103.901 89.734 1 69.39 ? O3 J40 505 R 1 HETATM 13 C C4 J40 . . . I 7 90.431 105.657 91.339 1 69.39 ? C4 J40 505 R 1 HETATM 14 O O4 J40 . . . I 7 91.752 106.024 91.062 1 69.39 ? O4 J40 505 R 1 HETATM 15 P P4 J40 . . . I 7 92.901 105.754 92.213 1 69.39 ? P4 J40 505 R 1 HETATM 16 O O41 J40 . . . I 7 93.693 106.933 92.555 1 69.39 ? O41 J40 505 R 1 HETATM 17 O O42 J40 . . . I 7 93.891 104.746 91.846 1 69.39 ? O42 J40 505 R 1 HETATM 18 O O43 J40 . . . I 7 92.37 105.291 93.491 1 69.39 ? O43 J40 505 R 1 HETATM 19 C C5 J40 . . . I 7 89.627 106.891 91.727 1 69.39 ? C5 J40 505 R 1 HETATM 20 O O5 J40 . . . I 7 90.248 107.538 92.802 1 69.39 ? O5 J40 505 R 1 HETATM 21 C C7 J40 . . . I 7 82.406 105.689 92.011 1 69.39 ? C7 J40 505 R 1 HETATM 22 C C8 J40 . . . I 7 81.931 106.256 93.347 1 69.39 ? C8 J40 505 R 1 HETATM 23 C C9 J40 . . . I 7 81.457 105.116 94.247 1 69.39 ? C9 J40 505 R 1 HETATM 24 O O16 J40 . . . I 7 82.985 106.936 93.967 1 69.39 ? O16 J40 505 R 1 HETATM 25 C C10 J40 . . . I 7 82.91 108.329 93.85 1 69.39 ? C10 J40 505 R 1 HETATM 26 O O17 J40 . . . I 7 82.763 108.829 92.786 1 69.39 ? O17 J40 505 R 1 HETATM 27 O O18 J40 . . . I 7 82.556 104.516 94.872 1 69.39 ? O18 J40 505 R 1 HETATM 28 C C11 J40 . . . I 7 82.679 104.828 96.23 1 69.39 ? C11 J40 505 R 1 HETATM 29 O O19 J40 . . . I 7 82.214 105.833 96.652 1 69.39 ? O19 J40 505 R 1 HETATM 30 C C12 J40 . . . I 7 83.016 109.209 95.093 1 69.39 ? C12 J40 505 R 1 HETATM 31 C C13 J40 . . . I 7 83.65 110.544 94.707 1 69.39 ? C13 J40 505 R 1 HETATM 32 C C14 J40 . . . I 7 83.784 111.428 95.944 1 69.39 ? C14 J40 505 R 1 HETATM 33 C C15 J40 . . . I 7 83.517 112.88 95.554 1 69.39 ? C15 J40 505 R 1 HETATM 34 C C16 J40 . . . I 7 82.219 113.051 94.769 1 69.39 ? C16 J40 505 R 1 HETATM 35 C C17 J40 . . . I 7 82.008 114.478 94.269 1 69.39 ? C17 J40 505 R 1 HETATM 36 C C18 J40 . . . I 7 81.588 115.371 95.434 1 69.39 ? C18 J40 505 R 1 HETATM 37 C C19 J40 . . . I 7 81.861 116.851 95.172 1 69.39 ? C19 J40 505 R 1 HETATM 38 C C20 J40 . . . I 7 80.966 117.775 95.996 1 69.39 ? C20 J40 505 R 1 HETATM 39 C C21 J40 . . . I 7 81.333 119.23 95.711 1 69.39 ? C21 J40 505 R 1 HETATM 40 C C22 J40 . . . I 7 81.375 119.557 94.22 1 69.39 ? C22 J40 505 R 1 HETATM 41 C C23 J40 . . . I 7 80.014 119.422 93.539 1 69.39 ? C23 J40 505 R 1 HETATM 42 C C24 J40 . . . I 7 79.291 120.767 93.562 1 69.39 ? C24 J40 505 R 1 HETATM 43 C C31 J40 . . . I 7 83.411 103.874 97.173 1 69.39 ? C31 J40 505 R 1 HETATM 44 C C32 J40 . . . I 7 83.539 104.523 98.549 1 69.39 ? C32 J40 505 R 1 HETATM 45 C C33 J40 . . . I 7 83.782 103.449 99.609 1 69.39 ? C33 J40 505 R 1 HETATM 46 C C34 J40 . . . I 7 85.186 103.62 100.185 1 69.39 ? C34 J40 505 R 1 HETATM 47 C C35 J40 . . . I 7 85.256 102.979 101.569 1 69.39 ? C35 J40 505 R 1 HETATM 48 C C36 J40 . . . I 7 84.525 103.864 102.576 1 69.39 ? C36 J40 505 R 1 HETATM 49 C C37 J40 . . . I 7 84.307 103.089 103.873 1 69.39 ? C37 J40 505 R 1 HETATM 50 C C38 J40 . . . I 7 85.655 102.648 104.438 1 69.39 ? C38 J40 505 R 1 HETATM 51 C C39 J40 . . . I 7 85.766 103.085 105.898 1 69.39 ? C39 J40 505 R 1 HETATM 52 C C40 J40 . . . I 7 87.196 102.868 106.39 1 69.39 ? C40 J40 505 R 1 HETATM 53 C C25 J40 . . . I 7 79.172 121.411 92.182 1 69.39 ? C25 J40 505 R 1 HETATM 54 C C26 J40 . . . I 7 80.523 121.745 91.553 1 69.39 ? C26 J40 505 R 1 HETATM 55 C C41 J40 . . . I 7 87.188 101.965 107.623 1 69.39 ? C41 J40 505 R 1 HETATM 56 C C42 J40 . . . I 7 86.611 100.598 107.261 1 69.39 ? C42 J40 505 R 1 HETATM 57 C C43 J40 . . . I 7 87.047 99.568 108.3 1 69.39 ? C43 J40 505 R 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 57 #