data_7E35
#
_model_server_result.job_id            Gui5adM7NvtGTiBRyaBA9Q 
_model_server_result.datetime_utc      '2024-11-08 18:21:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7e35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    7E35 
#
_exptl.entry_id    7E35 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              429.554 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(3-acetamidophenyl)methyl]-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7E35 
_cell.length_a            99.82 
_cell.length_b            99.82 
_cell.length_c            298.324 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7E35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    'P 65 2 (x,y,z+1/12)' 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 189 B CYS 190 1_555 C ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc2 A SG CYS 192 B CYS 193 1_555 C ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc3 A SG CYS 224 B CYS 225 1_555 C ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc4 A SG CYS 226 B CYS 227 1_555 C ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? 
metalc ? metalc5 B SG CYS 189 A CYS 190 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc6 B SG CYS 192 A CYS 193 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc7 B SG CYS 224 A CYS 225 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc8 B SG CYS 226 A CYS 227 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
#
_chem_comp.formula           'C27 H31 N3 O2' 
_chem_comp.formula_weight    429.554 
_chem_comp.id                GYX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(3-acetamidophenyl)methyl]-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C31 C32 GYX doub 129 n y 
C31 C30 GYX sing 130 n y 
C32 C27 GYX sing 131 n y 
C30 C29 GYX doub 132 n y 
C26 C27 GYX doub 133 n y 
C26 C25 GYX sing 134 n y 
C27 C28 GYX sing 135 n y 
C29 C28 GYX sing 136 n y 
C25 C24 GYX doub 137 n y 
C28 C23 GYX doub 138 n y 
C24 C23 GYX sing 139 n y 
C23 C02 GYX sing 140 n n 
C02 C01 GYX sing 141 n n 
C02 N03 GYX sing 142 n n 
N03 C22 GYX sing 143 n n 
N03 C04 GYX sing 144 n n 
C22 C21 GYX sing 145 n n 
C04 C05 GYX sing 146 n n 
C21 C06 GYX sing 147 n n 
C05 C06 GYX sing 148 n n 
C06 C07 GYX sing 149 n n 
N08 C07 GYX sing 150 n n 
N08 C09 GYX sing 151 n n 
C07 O20 GYX doub 152 n n 
C09 C10 GYX sing 153 n n 
C10 C11 GYX doub 154 n y 
C10 C19 GYX sing 155 n y 
C11 C12 GYX sing 156 n y 
C19 C14 GYX doub 157 n y 
C12 C13 GYX doub 158 n y 
O18 C16 GYX doub 159 n n 
C14 C13 GYX sing 160 n y 
C14 N15 GYX sing 161 n n 
C16 N15 GYX sing 162 n n 
C16 C17 GYX sing 163 n n 
C19 H1 GYX sing 164 n n 
C21 H2 GYX sing 165 n n 
C21 H3 GYX sing 166 n n 
C22 H4 GYX sing 167 n n 
C22 H5 GYX sing 168 n n 
C24 H6 GYX sing 169 n n 
C25 H7 GYX sing 170 n n 
C26 H8 GYX sing 171 n n 
C11 H9 GYX sing 172 n n 
C12 H10 GYX sing 173 n n 
C13 H11 GYX sing 174 n n 
C17 H12 GYX sing 175 n n 
C17 H13 GYX sing 176 n n 
C17 H14 GYX sing 177 n n 
C01 H15 GYX sing 178 n n 
C01 H16 GYX sing 179 n n 
C01 H17 GYX sing 180 n n 
C02 H18 GYX sing 181 n n 
C04 H19 GYX sing 182 n n 
C04 H20 GYX sing 183 n n 
C05 H21 GYX sing 184 n n 
C05 H22 GYX sing 185 n n 
C06 H23 GYX sing 186 n n 
C09 H24 GYX sing 187 n n 
C09 H25 GYX sing 188 n n 
C29 H26 GYX sing 189 n n 
C30 H27 GYX sing 190 n n 
C31 H28 GYX sing 191 n n 
C32 H29 GYX sing 192 n n 
N08 H31 GYX sing 193 n n 
N15 H32 GYX sing 194 n n 
#
_atom_sites.entry_id                     7E35 
_atom_sites.fract_transf_matrix[1][1]    0.010018 
_atom_sites.fract_transf_matrix[1][2]    0.005784 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011568 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003352 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN B 1 401 320 ZN ZN . 
D 3 GYX B 1 402 322 GYX S43 . 
E 2 ZN A 1 401 320 ZN ZN . 
F 3 GYX A 1 402 322 GYX S43 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C19 GYX . . . D 3 -24.795 -27.484 -1.681 1 97.87 ? C19 GYX 402 B 1 
HETATM 2 C C21 GYX . . . D 3 -21.824 -34.047 -1.26 1 82.72 ? C21 GYX 402 B 1 
HETATM 3 C C22 GYX . . . D 3 -20.498 -34.294 -0.538 1 83.14 ? C22 GYX 402 B 1 
HETATM 4 C C23 GYX . . . D 3 -17.401 -34.815 -2.511 1 72.96 ? C23 GYX 402 B 1 
HETATM 5 C C24 GYX . . . D 3 -16.421 -34.598 -1.538 1 69.27 ? C24 GYX 402 B 1 
HETATM 6 C C25 GYX . . . D 3 -15.095 -34.395 -1.917 1 68.92 ? C25 GYX 402 B 1 
HETATM 7 C C26 GYX . . . D 3 -14.758 -34.411 -3.267 1 68.22 ? C26 GYX 402 B 1 
HETATM 8 C C27 GYX . . . D 3 -15.747 -34.642 -4.272 1 72.29 ? C27 GYX 402 B 1 
HETATM 9 C C10 GYX . . . D 3 -24.461 -28.7 -2.3 1 96.13 ? C10 GYX 402 B 1 
HETATM 10 C C11 GYX . . . D 3 -24.647 -28.896 -3.665 1 89.83 ? C11 GYX 402 B 1 
HETATM 11 C C12 GYX . . . D 3 -25.162 -27.856 -4.43 1 93.87 ? C12 GYX 402 B 1 
HETATM 12 C C13 GYX . . . D 3 -25.49 -26.637 -3.825 1 98.42 ? C13 GYX 402 B 1 
HETATM 13 C C14 GYX . . . D 3 -25.333 -26.435 -2.444 1 101.89 ? C14 GYX 402 B 1 
HETATM 14 C C16 GYX . . . D 3 -26.877 -24.321 -2.097 1 92.78 ? C16 GYX 402 B 1 
HETATM 15 C C17 GYX . . . D 3 -27.063 -22.977 -1.383 1 79.62 ? C17 GYX 402 B 1 
HETATM 16 C C01 GYX . . . D 3 -18.852 -36.356 -1.1 1 80.7 ? C01 GYX 402 B 1 
HETATM 17 C C02 GYX . . . D 3 -18.912 -35.057 -2.046 1 78.13 ? C02 GYX 402 B 1 
HETATM 18 C C04 GYX . . . D 3 -19.317 -32.732 -1.88 1 77.67 ? C04 GYX 402 B 1 
HETATM 19 C C05 GYX . . . D 3 -20.643 -32.248 -2.488 1 77.96 ? C05 GYX 402 B 1 
HETATM 20 C C06 GYX . . . D 3 -21.833 -33.027 -2.277 1 80.59 ? C06 GYX 402 B 1 
HETATM 21 C C07 GYX . . . D 3 -22.763 -31.994 -1.662 1 81.1 ? C07 GYX 402 B 1 
HETATM 22 C C09 GYX . . . D 3 -23.89 -29.86 -1.484 1 91.79 ? C09 GYX 402 B 1 
HETATM 23 C C28 GYX . . . D 3 -17.049 -34.845 -3.903 1 73.69 ? C28 GYX 402 B 1 
HETATM 24 C C29 GYX . . . D 3 -18.037 -35.073 -4.912 1 73.91 ? C29 GYX 402 B 1 
HETATM 25 C C30 GYX . . . D 3 -17.661 -35.09 -6.254 1 72.54 ? C30 GYX 402 B 1 
HETATM 26 C C31 GYX . . . D 3 -16.337 -34.882 -6.637 1 68.34 ? C31 GYX 402 B 1 
HETATM 27 C C32 GYX . . . D 3 -15.374 -34.667 -5.654 1 70.54 ? C32 GYX 402 B 1 
HETATM 28 N N03 GYX . . . D 3 -19.368 -34.063 -1.373 1 78.88 ? N03 GYX 402 B 1 
HETATM 29 N N08 GYX . . . D 3 -23.001 -30.705 -2.264 1 77.92 ? N08 GYX 402 B 1 
HETATM 30 N N15 GYX . . . D 3 -25.673 -25.129 -1.829 1 102.92 ? N15 GYX 402 B 1 
HETATM 31 O O18 GYX . . . D 3 -27.715 -24.697 -2.855 1 88.59 ? O18 GYX 402 B 1 
HETATM 32 O O20 GYX . . . D 3 -23.288 -32.236 -0.627 1 90.74 ? O20 GYX 402 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#